Wall clock time and date at job start Wed Apr 1 2020 05:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 S 1.65607 * 119.99618 * 2 1 4 4 O 1.42096 * 104.27602 * 308.92275 * 3 2 1 5 5 O 1.42103 * 104.27419 * 181.06986 * 3 2 1 6 6 C 1.81394 * 104.45184 * 64.99923 * 3 2 1 7 7 C 1.53004 * 109.47189 * 189.65722 * 6 3 2 8 8 H 1.08997 * 110.33303 * 54.24061 * 7 6 3 9 9 C 1.54903 * 110.37357 * 176.49719 * 7 6 3 10 10 C 1.55138 * 101.65041 * 155.89952 * 9 7 6 11 11 C 1.54315 * 103.02136 * 324.34407 * 10 9 7 12 12 N 1.47446 * 107.23099 * 22.28659 * 11 10 9 13 13 C 1.46898 * 111.00086 * 123.26150 * 12 11 10 14 14 H 1.08997 * 109.47377 * 177.60442 * 13 12 11 15 15 C 1.53000 * 109.47461 * 57.59860 * 13 12 11 16 16 C 1.50703 * 109.46769 * 297.59862 * 13 12 11 17 17 O 1.21282 * 119.99843 * 24.27975 * 16 13 12 18 18 N 1.34778 * 120.00046 * 204.27213 * 16 13 12 19 19 C 1.46502 * 119.99856 * 4.55302 * 18 16 13 20 20 C 1.46501 * 120.00196 * 184.55138 * 18 16 13 21 21 C 1.50696 * 109.47175 * 89.99976 * 20 18 16 22 22 H 1.08008 * 119.99882 * 0.02562 * 21 20 18 23 23 C 1.37872 * 120.00283 * 179.97438 * 21 20 18 24 24 N 1.31509 * 120.00285 * 180.02562 * 23 21 20 25 25 Si 1.86805 * 119.99828 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.46579 * 89.99990 * 25 23 21 27 27 H 1.48503 * 109.47244 * 209.99603 * 25 23 21 28 28 H 1.48491 * 109.47254 * 330.00010 * 25 23 21 29 29 H 1.09000 * 109.47369 * 300.00647 * 1 2 3 30 30 H 1.09005 * 109.47394 * 60.00572 * 1 2 3 31 31 H 1.09001 * 109.46993 * 180.02562 * 1 2 3 32 32 H 0.96997 * 120.00146 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.47361 * 69.65730 * 6 3 2 34 34 H 1.09001 * 109.47142 * 309.65669 * 6 3 2 35 35 H 1.09003 * 110.98835 * 273.98775 * 9 7 6 36 36 H 1.08995 * 110.99118 * 37.80799 * 9 7 6 37 37 H 1.09001 * 110.70900 * 82.72688 * 10 9 7 38 38 H 1.09003 * 110.70448 * 205.95922 * 10 9 7 39 39 H 1.09000 * 109.89122 * 262.87728 * 11 10 9 40 40 H 1.08997 * 109.89296 * 141.69299 * 11 10 9 41 41 H 1.08997 * 109.47211 * 55.26610 * 15 13 12 42 42 H 1.08999 * 109.47292 * 175.26784 * 15 13 12 43 43 H 1.09004 * 109.47265 * 295.26917 * 15 13 12 44 44 H 1.09008 * 109.46590 * 89.08725 * 19 18 16 45 45 H 1.08998 * 109.47132 * 209.08458 * 19 18 16 46 46 H 1.08992 * 109.47438 * 329.09098 * 19 18 16 47 47 H 1.08996 * 109.47035 * 210.00772 * 20 18 16 48 48 H 1.09005 * 109.46917 * 330.00151 * 20 18 16 49 49 H 0.97005 * 120.00029 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4343 0.0000 4 8 1.7188 2.1703 -1.0714 5 8 3.6606 1.0493 -0.0257 6 6 1.8763 2.1975 1.5920 7 6 2.3876 3.6393 1.6157 8 1 2.0084 4.1898 0.7547 9 6 1.9662 4.3394 2.9317 10 6 3.0408 5.4518 3.0527 11 6 4.3089 4.7725 2.4945 12 7 3.8657 3.6610 1.6329 13 6 4.4062 3.8004 0.2741 14 1 4.0989 2.9458 -0.3286 15 6 5.9338 3.8579 0.3361 16 6 3.8806 5.0685 -0.3478 17 8 3.5161 5.9845 0.3586 18 7 3.8158 5.1848 -1.6890 19 6 4.1615 4.0440 -2.5407 20 6 3.3996 6.4519 -2.2952 21 6 4.6103 7.3175 -2.5311 22 1 5.5918 6.9594 -2.2573 23 6 4.4653 8.5662 -3.0975 24 7 5.5220 9.3214 -3.3038 25 14 2.7679 9.1852 -3.5718 26 1 2.1665 9.9095 -2.4233 27 1 2.8827 10.1052 -4.7318 28 1 1.9051 8.0332 -3.9371 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.9500 -0.8400 0.0004 33 1 2.3435 1.6330 2.3989 34 1 0.7944 2.1934 1.7248 35 1 0.9682 4.7686 2.8434 36 1 2.0203 3.6508 3.7748 37 1 2.7694 6.3173 2.4483 38 1 3.1837 5.7377 4.0948 39 1 4.9148 4.3871 3.3145 40 1 4.8859 5.4882 1.9089 41 1 6.3095 2.9797 0.8612 42 1 6.3382 3.8767 -0.6759 43 1 6.2423 4.7584 0.8674 44 1 3.2714 3.4403 -2.7183 45 1 4.5509 4.4058 -3.4923 46 1 4.9192 3.4371 -2.0452 47 1 2.9033 6.2544 -3.2454 48 1 2.7103 6.9660 -1.6253 49 1 5.4199 10.2001 -3.7020 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331186462.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:10 Heat of formation + Delta-G solvation = -109.018065 kcal Electronic energy + Delta-G solvation = -32017.799011 eV Core-core repulsion = 27913.835710 eV Total energy + Delta-G solvation = -4103.963301 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.94723 -39.29356 -38.19367 -37.11007 -36.63157 -35.91494 -35.06760 -34.42785 -32.80342 -30.74753 -29.64913 -27.65709 -27.23582 -26.81388 -25.57236 -23.81937 -21.96130 -21.85570 -20.46394 -19.80443 -19.18279 -18.99424 -18.23047 -17.83751 -17.53720 -17.08293 -16.92690 -16.45346 -16.28673 -15.87990 -15.73571 -15.17902 -14.75041 -14.74525 -14.64185 -14.38654 -14.07785 -13.95487 -13.76247 -13.65974 -13.58978 -13.32719 -13.24417 -13.20758 -13.11654 -13.00249 -12.80517 -12.74171 -12.57585 -12.48457 -12.44205 -12.09878 -12.04378 -11.92294 -11.78774 -11.50318 -11.45483 -11.01979 -10.86499 -10.43677 -9.50982 -9.43227 -8.37711 -6.42928 -0.77112 1.29033 1.31547 1.41641 1.58376 1.77476 2.20999 2.27282 2.58894 2.70711 2.95812 3.22200 3.38447 3.48919 3.58623 3.71180 3.94852 4.00235 4.06413 4.19678 4.20473 4.24583 4.30281 4.52268 4.59785 4.62229 4.65645 4.66437 4.71569 4.75059 4.78788 4.85122 4.89878 4.91419 4.99270 4.99992 5.05637 5.08332 5.15520 5.39238 5.42454 5.54579 5.69039 5.71668 6.11334 6.19187 6.55133 6.57676 7.14322 7.28111 8.79005 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013021 B = 0.004232 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.847612 B = 6615.323746 C = 7326.862862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -1.117 6.117 3 S 2.587 3.413 4 O -0.993 6.993 5 O -0.972 6.972 6 C -0.594 4.594 7 C 0.060 3.940 8 H 0.043 0.957 9 C -0.098 4.098 10 C -0.137 4.137 11 C 0.043 3.957 12 N -0.494 5.494 13 C 0.039 3.961 14 H 0.103 0.897 15 C -0.135 4.135 16 C 0.471 3.529 17 O -0.566 6.566 18 N -0.600 5.600 19 C 0.066 3.934 20 C 0.223 3.777 21 C -0.535 4.535 22 H 0.031 0.969 23 C 0.016 3.984 24 N -0.941 5.941 25 Si 0.945 3.055 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.245 1.245 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.111 0.889 32 H 0.426 0.574 33 H 0.173 0.827 34 H 0.169 0.831 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.048 0.952 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.044 0.956 41 H 0.103 0.897 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.043 0.957 48 H 0.022 0.978 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.981 -23.168 13.493 29.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.879 5.879 3 S 2.682 3.318 4 O -0.982 6.982 5 O -0.962 6.962 6 C -0.726 4.726 7 C -0.050 4.050 8 H 0.061 0.939 9 C -0.137 4.137 10 C -0.175 4.175 11 C -0.084 4.084 12 N -0.218 5.218 13 C -0.074 4.074 14 H 0.120 0.880 15 C -0.192 4.192 16 C 0.258 3.742 17 O -0.446 6.446 18 N -0.331 5.331 19 C -0.077 4.077 20 C 0.101 3.899 21 C -0.574 4.574 22 H 0.049 0.951 23 C -0.182 4.182 24 N -0.581 5.581 25 Si 0.768 3.232 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.169 1.169 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.129 0.871 32 H 0.261 0.739 33 H 0.190 0.810 34 H 0.187 0.813 35 H 0.102 0.898 36 H 0.128 0.872 37 H 0.067 0.933 38 H 0.112 0.888 39 H 0.117 0.883 40 H 0.063 0.937 41 H 0.122 0.878 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.061 0.939 48 H 0.040 0.960 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.488 -22.571 13.218 28.568 hybrid contribution -0.471 1.373 -0.658 1.594 sum -11.959 -21.198 12.560 27.388 Atomic orbital electron populations 1.21842 0.77392 1.06307 1.02516 1.55119 1.16774 1.23707 1.92253 1.05428 0.73789 0.74442 0.78091 1.93599 1.79246 1.73323 1.52054 1.93571 1.33514 1.81366 1.87751 1.30404 1.13340 1.05685 1.23209 1.22404 0.88168 0.93183 1.01274 0.93868 1.22653 0.98978 0.96905 0.95159 1.22727 0.94848 0.98347 1.01575 1.22837 0.98348 0.90981 0.96190 1.64170 1.07377 1.43559 1.06646 1.22460 0.99455 0.93929 0.91553 0.87993 1.21759 0.90283 1.03925 1.03242 1.22152 0.78513 0.90961 0.82549 1.90596 1.50317 1.42695 1.61021 1.47985 1.65388 1.13590 1.06166 1.22060 1.01326 0.88132 0.96184 1.19358 0.94828 0.82242 0.93473 1.21474 0.93486 1.01375 1.41029 0.95078 1.25775 1.01242 0.96323 0.94883 1.70035 1.31664 1.11255 1.45181 0.85755 0.79598 0.79407 0.78467 1.19839 1.19590 1.16882 0.89995 0.92715 0.87077 0.73855 0.80964 0.81295 0.89774 0.87170 0.93285 0.88786 0.88343 0.93702 0.87839 0.91620 0.92595 0.91224 0.90185 0.90162 0.93878 0.95999 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.56 11.03 127.77 1.41 1.97 16 2 N -1.12 -15.01 6.08 -206.54 -1.25 -16.27 16 3 S 2.59 58.78 3.94 -56.49 -0.22 58.56 16 4 O -0.99 -30.77 17.18 -127.65 -2.19 -32.96 16 5 O -0.97 -26.79 15.79 -127.65 -2.02 -28.81 16 6 C -0.59 -9.95 5.76 71.98 0.41 -9.53 16 7 C 0.06 1.57 2.05 45.39 0.09 1.67 16 8 H 0.04 1.48 6.22 -2.39 -0.01 1.46 16 9 C -0.10 -2.06 6.50 31.98 0.21 -1.86 16 10 C -0.14 -3.70 6.45 31.77 0.20 -3.49 16 11 C 0.04 1.29 5.28 86.64 0.46 1.75 16 12 N -0.49 -14.60 4.81 -840.01 -4.04 -18.64 16 13 C 0.04 1.36 1.59 44.17 0.07 1.43 16 14 H 0.10 3.50 2.72 -2.66 -0.01 3.49 16 15 C -0.13 -4.39 8.75 71.98 0.63 -3.76 16 16 C 0.47 21.00 5.29 87.66 0.46 21.46 16 17 O -0.57 -27.93 11.02 -3.04 -0.03 -27.97 16 18 N -0.60 -28.00 2.86 -851.13 -2.43 -30.43 16 19 C 0.07 2.51 9.93 127.77 1.27 3.78 16 20 C 0.22 11.82 4.26 85.63 0.36 12.19 16 21 C -0.54 -32.81 9.94 25.60 0.25 -32.56 16 22 H 0.03 2.11 8.06 -2.91 -0.02 2.09 16 23 C 0.02 0.98 5.47 84.65 0.46 1.45 16 24 N -0.94 -60.57 13.96 21.44 0.30 -60.27 16 25 Si 0.95 46.07 27.47 68.60 1.88 47.96 16 26 H -0.27 -13.20 7.11 99.48 0.71 -12.50 16 27 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 28 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 29 H 0.08 0.31 7.40 -2.39 -0.02 0.29 16 30 H 0.05 0.66 8.04 -2.38 -0.02 0.64 16 31 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.43 4.19 8.92 -96.74 -0.86 3.32 16 33 H 0.17 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.17 1.53 7.40 -2.39 -0.02 1.51 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.11 1.57 8.06 -2.39 -0.02 1.55 16 37 H 0.05 1.72 6.73 -2.39 -0.02 1.71 16 38 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.04 1.67 4.78 -2.39 -0.01 1.66 16 41 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 42 H 0.06 2.15 7.02 -2.39 -0.02 2.14 16 43 H 0.06 1.92 6.52 -2.39 -0.02 1.90 16 44 H 0.07 2.50 7.61 -2.38 -0.02 2.48 16 45 H 0.08 3.00 8.06 -2.39 -0.02 2.99 16 46 H 0.08 2.73 5.26 -2.39 -0.01 2.72 16 47 H 0.04 2.16 7.13 -2.39 -0.02 2.14 16 48 H 0.02 1.22 6.79 -2.38 -0.02 1.20 16 49 H 0.27 16.06 8.31 -92.70 -0.77 15.29 16 Total: -1.00 -85.96 380.03 -3.66 -89.62 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: 0.05 Total: 24.71 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 6.30 Total: -5.49 kcal Atomic # 7 Polarization: -118.18 SS G_CDS: -7.43 Total: -125.61 kcal Atomic # 8 Polarization: -85.49 SS G_CDS: -4.24 Total: -89.73 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.88 Total: 47.96 kcal Atomic # 16 Polarization: 58.78 SS G_CDS: -0.22 Total: 58.56 kcal Total: -85.96 -3.66 -89.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331186462.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.403 kcal (2) G-P(sol) polarization free energy of solvation -85.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds