Wall clock time and date at job start Wed Apr 1 2020 05:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47074 * 2 1 4 4 C 1.50696 * 109.47220 * 239.99811 * 2 1 3 5 5 H 1.08003 * 120.00238 * 240.00655 * 4 2 1 6 6 C 1.37878 * 119.99844 * 60.00102 * 4 2 1 7 7 N 1.31507 * 120.00301 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99920 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47173 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47401 * 120.00031 * 8 6 4 11 11 H 1.48500 * 109.46810 * 240.00242 * 8 6 4 12 12 N 1.46496 * 109.46888 * 120.00060 * 2 1 3 13 13 C 1.46502 * 120.00550 * 59.99631 * 12 2 1 14 14 S 1.65608 * 120.00003 * 240.00135 * 12 2 1 15 15 O 1.42098 * 106.40124 * 203.54193 * 14 12 2 16 16 O 1.42108 * 106.39707 * 336.45883 * 14 12 2 17 17 N 1.65597 * 107.21843 * 89.99545 * 14 12 2 18 18 C 1.46502 * 119.99580 * 65.00562 * 17 14 12 19 19 H 1.08992 * 109.47474 * 24.99821 * 18 17 14 20 20 C 1.52997 * 109.47095 * 264.99228 * 18 17 14 21 21 C 1.50700 * 109.47104 * 144.99870 * 18 17 14 22 22 O 1.21281 * 119.99867 * 16.51891 * 21 18 17 23 23 N 1.34771 * 120.00256 * 196.52085 * 21 18 17 24 24 C 1.46933 * 120.62857 * 4.96317 * 23 21 18 25 25 C 1.53630 * 108.54225 * 126.36862 * 24 23 21 26 26 C 1.53046 * 109.24174 * 54.85669 * 25 24 23 27 27 C 1.53040 * 109.53846 * 298.51040 * 26 25 24 28 28 C 1.46922 * 120.63419 * 185.24222 * 23 21 18 29 29 H 1.09007 * 109.46962 * 60.00261 * 1 2 3 30 30 H 1.08999 * 109.47493 * 300.00261 * 1 2 3 31 31 H 1.09004 * 109.47515 * 179.97438 * 1 2 3 32 32 H 0.96999 * 120.00618 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.46716 * 89.99497 * 13 12 2 34 34 H 1.08994 * 109.47773 * 210.00146 * 13 12 2 35 35 H 1.09002 * 109.46740 * 330.00692 * 13 12 2 36 36 H 0.96994 * 120.00304 * 244.99706 * 17 14 12 37 37 H 1.08999 * 109.47592 * 301.11148 * 20 18 17 38 38 H 1.09002 * 109.46925 * 61.10530 * 20 18 17 39 39 H 1.08999 * 109.47597 * 181.10412 * 20 18 17 40 40 H 1.09006 * 109.58454 * 246.19951 * 24 23 21 41 41 H 1.08997 * 109.58235 * 6.62647 * 24 23 21 42 42 H 1.08997 * 109.63139 * 294.86386 * 25 24 23 43 43 H 1.08999 * 109.43009 * 174.72136 * 25 24 23 44 44 H 1.08997 * 109.46013 * 178.49214 * 26 25 24 45 45 H 1.08997 * 109.46217 * 58.52838 * 26 25 24 46 46 H 1.09002 * 109.49931 * 301.41770 * 27 26 25 47 47 H 1.08997 * 109.50110 * 181.31927 * 27 26 25 48 48 H 1.09001 * 109.58832 * 353.37643 * 28 23 21 49 49 H 1.09006 * 109.58985 * 113.79808 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1465 -2.2871 -3.6037 10 1 1.1661 -1.5868 -4.8161 11 1 3.1467 -0.1874 -4.8164 12 7 2.0183 -0.6906 1.1961 13 6 1.6643 -2.0932 1.4281 14 16 2.9703 0.1142 2.2863 15 8 3.7117 -0.8789 2.9815 16 8 3.5794 1.1830 1.5748 17 7 1.9606 0.8091 3.3998 18 6 1.1508 -0.0352 4.2817 19 1 1.6295 -1.0080 4.3935 20 6 -0.2416 -0.2186 3.6748 21 6 1.0275 0.6221 5.6321 22 8 1.2923 1.7987 5.7603 23 7 0.6229 -0.0974 6.6974 24 6 0.4030 -1.5457 6.5827 25 6 1.2239 -2.2523 7.6722 26 6 0.8579 -1.6677 9.0384 27 6 1.2033 -0.1770 9.0663 28 6 0.3876 0.5522 7.9940 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 0.7088 1.1612 -3.4844 33 1 2.4156 -2.7377 0.9717 34 1 1.6237 -2.2852 2.5002 35 1 0.6903 -2.3002 0.9847 36 1 1.9054 1.7751 3.4681 37 1 -0.7126 0.7558 3.5447 38 1 -0.1539 -0.7117 2.7066 39 1 -0.8504 -0.8305 4.3403 40 1 -0.6559 -1.7663 6.7182 41 1 0.7268 -1.8876 5.5997 42 1 2.2871 -2.1019 7.4850 43 1 0.9993 -3.3189 7.6609 44 1 1.4187 -2.1850 9.8168 45 1 -0.2101 -1.7962 9.2141 46 1 2.2667 -0.0461 8.8661 47 1 0.9641 0.2336 10.0473 48 1 0.7011 1.5949 7.9426 49 1 -0.6725 0.4992 8.2423 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337763768.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:33 Heat of formation + Delta-G solvation = -138.496712 kcal Electronic energy + Delta-G solvation = -30974.012792 eV Core-core repulsion = 26868.771201 eV Total energy + Delta-G solvation = -4105.241591 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.46933 -38.58330 -38.36575 -37.95077 -36.94905 -36.55258 -34.50984 -33.97000 -32.13394 -30.89945 -30.68108 -27.30776 -26.96651 -26.81522 -24.89466 -23.93994 -22.58395 -21.77089 -20.55477 -20.16622 -19.15669 -18.58758 -18.35483 -17.75617 -17.50273 -17.01005 -16.48470 -16.35360 -15.88524 -15.41275 -15.17821 -15.04439 -14.93371 -14.88482 -14.58282 -14.39146 -14.23660 -13.81780 -13.77221 -13.42609 -13.41880 -13.27411 -13.20236 -13.11795 -12.96569 -12.93487 -12.76678 -12.65452 -12.55849 -12.19530 -12.16784 -12.09487 -11.87987 -11.84592 -11.63235 -11.47266 -11.12016 -10.99216 -10.56313 -10.48321 -9.69145 -9.65701 -8.09330 -6.22584 -0.42242 1.42499 1.42892 1.46146 1.56013 1.80508 2.06356 2.44441 2.57699 3.19402 3.28273 3.39359 3.68611 3.88613 3.95633 3.99354 4.04628 4.06588 4.14695 4.32591 4.38967 4.54457 4.63074 4.70584 4.74812 4.84488 4.86953 4.89817 4.93183 4.95371 5.04825 5.05529 5.09096 5.18555 5.19956 5.24711 5.25673 5.31964 5.47777 5.55575 5.65344 5.70274 5.89668 5.94829 6.18760 6.28425 6.33942 6.85817 7.00806 7.46520 8.94815 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022794 B = 0.002960 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.087089 B = 9455.660990 C = 9520.314621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.274 3.726 3 H 0.019 0.981 4 C -0.535 4.535 5 H 0.058 0.942 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.955 3.045 9 H -0.269 1.269 10 H -0.274 1.274 11 H -0.288 1.288 12 N -0.990 5.990 13 C 0.097 3.903 14 S 2.797 3.203 15 O -1.005 7.005 16 O -1.016 7.016 17 N -1.112 6.112 18 C 0.128 3.872 19 H 0.124 0.876 20 C -0.168 4.168 21 C 0.514 3.486 22 O -0.574 6.574 23 N -0.605 5.605 24 C 0.090 3.910 25 C -0.138 4.138 26 C -0.116 4.116 27 C -0.132 4.132 28 C 0.106 3.894 29 H 0.063 0.937 30 H 0.039 0.961 31 H 0.050 0.950 32 H 0.263 0.737 33 H 0.043 0.957 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.420 0.580 37 H 0.061 0.939 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.050 0.950 43 H 0.101 0.899 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.046 0.954 47 H 0.090 0.910 48 H 0.067 0.933 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.808 -9.156 23.142 26.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.170 3.830 3 H 0.037 0.963 4 C -0.575 4.575 5 H 0.077 0.923 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.781 3.219 9 H -0.193 1.193 10 H -0.200 1.200 11 H -0.214 1.214 12 N -0.833 5.833 13 C -0.048 4.048 14 S 2.806 3.194 15 O -0.988 6.988 16 O -1.001 7.001 17 N -0.873 5.873 18 C 0.018 3.982 19 H 0.141 0.859 20 C -0.227 4.227 21 C 0.301 3.699 22 O -0.454 6.454 23 N -0.338 5.338 24 C -0.032 4.032 25 C -0.176 4.176 26 C -0.154 4.154 27 C -0.171 4.171 28 C -0.016 4.016 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.256 0.744 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.112 0.888 42 H 0.069 0.931 43 H 0.119 0.881 44 H 0.091 0.909 45 H 0.100 0.900 46 H 0.065 0.935 47 H 0.109 0.891 48 H 0.086 0.914 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.769 -8.595 23.090 25.551 hybrid contribution 0.328 0.642 -1.161 1.366 sum -6.441 -7.953 21.929 24.200 Atomic orbital electron populations 1.21936 0.96353 1.00587 1.00585 1.18408 0.92556 0.91101 0.80977 0.96282 1.21693 1.31443 1.12952 0.91362 0.92329 1.25625 0.95291 0.95710 1.01654 1.69986 1.37427 1.23766 1.24194 0.85565 0.78237 0.78571 0.79571 1.19294 1.19958 1.21437 1.57524 1.69844 1.21119 1.34771 1.21490 1.02291 0.79913 1.01101 1.01235 0.73528 0.72375 0.72311 1.93511 1.69601 1.61027 1.74631 1.93558 1.75701 1.57663 1.73130 1.55853 1.61727 1.18328 1.51410 1.20932 0.95325 0.94420 0.87538 0.85861 1.22407 0.93130 1.04030 1.03145 1.20813 0.75930 0.86676 0.86520 1.90655 1.51197 1.18018 1.85509 1.48196 1.66106 1.09851 1.09630 1.22355 1.02353 0.77314 1.01159 1.22046 0.99607 1.01229 0.94761 1.21521 1.02716 0.94166 0.96984 1.21907 0.99321 0.96955 0.98871 1.21745 1.00964 0.97260 0.81639 0.91851 0.94232 0.93098 0.92751 0.93838 0.89831 0.89483 0.74381 0.91979 0.89833 0.87619 0.87815 0.88802 0.93085 0.88107 0.90851 0.90002 0.93530 0.89107 0.91428 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.73 8.68 71.98 0.63 -5.11 16 2 C 0.27 13.12 2.62 44.25 0.12 13.23 16 3 H 0.02 1.08 6.91 -2.39 -0.02 1.06 16 4 C -0.53 -28.43 8.37 25.60 0.21 -28.21 16 5 H 0.06 3.09 7.65 -2.91 -0.02 3.07 16 6 C 0.02 0.91 5.30 84.66 0.45 1.36 16 7 N -0.91 -51.18 11.32 21.45 0.24 -50.94 16 8 Si 0.95 43.02 29.54 68.60 2.03 45.05 16 9 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 12 N -0.99 -38.71 2.81 -520.47 -1.46 -40.17 16 13 C 0.10 2.95 8.37 127.77 1.07 4.02 16 14 S 2.80 111.25 6.08 -56.49 -0.34 110.90 16 15 O -1.00 -40.50 16.55 -128.00 -2.12 -42.62 16 16 O -1.02 -50.48 16.70 -128.00 -2.14 -52.62 16 17 N -1.11 -35.93 5.43 -172.53 -0.94 -36.87 16 18 C 0.13 3.16 2.49 44.24 0.11 3.27 16 19 H 0.12 2.62 5.44 -2.39 -0.01 2.61 16 20 C -0.17 -3.33 9.29 71.98 0.67 -2.66 16 21 C 0.51 13.32 6.96 87.66 0.61 13.93 16 22 O -0.57 -19.47 15.42 -3.03 -0.05 -19.52 16 23 N -0.60 -10.95 2.97 -818.03 -2.43 -13.37 16 24 C 0.09 0.97 5.50 86.51 0.48 1.44 16 25 C -0.14 -1.34 6.10 30.82 0.19 -1.15 16 26 C -0.12 -0.97 5.88 30.62 0.18 -0.79 16 27 C -0.13 -1.61 6.08 30.67 0.19 -1.43 16 28 C 0.11 1.67 6.44 86.36 0.56 2.22 16 29 H 0.06 3.11 6.07 -2.38 -0.01 3.09 16 30 H 0.04 1.43 7.45 -2.39 -0.02 1.41 16 31 H 0.05 1.94 6.66 -2.39 -0.02 1.92 16 32 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 33 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.08 1.88 7.35 -2.39 -0.02 1.86 16 35 H 0.09 2.43 6.43 -2.39 -0.02 2.42 16 36 H 0.42 14.03 8.09 -96.75 -0.78 13.25 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.08 1.77 5.64 -2.39 -0.01 1.76 16 39 H 0.11 1.29 7.13 -2.39 -0.02 1.27 16 40 H 0.10 0.59 8.14 -2.38 -0.02 0.58 16 41 H 0.09 0.94 5.28 -2.39 -0.01 0.93 16 42 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.07 1.43 7.00 -2.39 -0.02 1.41 16 49 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 Total: -1.00 -75.73 387.05 -1.57 -77.30 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 0.18 Total: 22.71 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 5.45 Total: 0.14 kcal Atomic # 7 Polarization: -136.77 SS G_CDS: -4.58 Total: -141.36 kcal Atomic # 8 Polarization: -110.45 SS G_CDS: -4.30 Total: -114.75 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: 111.25 SS G_CDS: -0.34 Total: 110.90 kcal Total: -75.73 -1.57 -77.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337763768.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.192 kcal (2) G-P(sol) polarization free energy of solvation -75.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds