Wall clock time and date at job start Wed Apr 1 2020 05:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47385 * 59.99525 * 8 6 4 10 10 H 1.48500 * 109.47279 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47348 * 299.99599 * 8 6 4 12 12 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 13 13 C 1.46502 * 119.99711 * 299.99999 * 12 2 1 14 14 S 1.65594 * 120.00414 * 119.99671 * 12 2 1 15 15 O 1.42095 * 106.40343 * 203.53804 * 14 12 2 16 16 O 1.42099 * 106.40342 * 336.46210 * 14 12 2 17 17 N 1.65600 * 107.21781 * 89.99807 * 14 12 2 18 18 C 1.46929 * 120.63343 * 269.72473 * 17 14 12 19 19 C 1.52761 * 109.00868 * 233.58269 * 18 17 14 20 20 C 1.53041 * 109.38329 * 305.58491 * 19 18 17 21 21 C 1.52999 * 109.45779 * 181.25796 * 20 19 18 22 22 C 1.53005 * 109.46982 * 64.93422 * 21 20 19 23 23 C 1.50695 * 109.47086 * 179.97438 * 22 21 20 24 24 N 1.34771 * 120.00153 * 179.97438 * 23 22 21 25 25 O 1.21283 * 120.00311 * 0.02562 * 23 22 21 26 26 C 1.53042 * 109.53494 * 61.24148 * 20 19 18 27 27 C 1.46925 * 120.63343 * 89.99863 * 17 14 12 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 31 31 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 32 32 H 1.08993 * 109.47565 * 90.00263 * 13 12 2 33 33 H 1.09007 * 109.46761 * 210.00296 * 13 12 2 34 34 H 1.09006 * 109.47241 * 329.99804 * 13 12 2 35 35 H 1.09005 * 109.58102 * 353.41762 * 18 17 14 36 36 H 1.08997 * 109.58842 * 113.83853 * 18 17 14 37 37 H 1.09002 * 109.56601 * 185.54686 * 19 18 17 38 38 H 1.09000 * 109.35959 * 65.49741 * 19 18 17 39 39 H 1.08999 * 109.45903 * 301.21877 * 20 19 18 40 40 H 1.09002 * 109.47030 * 184.92857 * 21 20 19 41 41 H 1.08990 * 109.47584 * 304.93471 * 21 20 19 42 42 H 1.09002 * 109.46776 * 299.99589 * 22 21 20 43 43 H 1.09004 * 109.46776 * 59.99567 * 22 21 20 44 44 H 0.97004 * 120.00247 * 0.02562 * 24 23 22 45 45 H 0.96996 * 120.00545 * 180.02562 * 24 23 22 46 46 H 1.08995 * 109.49367 * 178.68545 * 26 20 19 47 47 H 1.08995 * 109.52299 * 58.60070 * 26 20 19 48 48 H 1.08997 * 109.59020 * 246.15959 * 27 17 14 49 49 H 1.09000 * 109.58294 * 6.44295 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.8064 -1.1211 4.0081 10 1 1.8269 -0.4202 5.2204 11 1 1.8259 -2.5204 4.0076 12 7 2.0184 -0.6905 -1.1962 13 6 1.6645 -2.0930 -1.4282 14 16 2.9704 0.1144 -2.2863 15 8 2.8228 -0.5643 -3.5259 16 8 2.6904 1.4974 -2.1192 17 7 4.5438 -0.1040 -1.8180 18 6 5.1899 0.8435 -0.8996 19 6 6.4898 1.3398 -1.5302 20 6 7.3602 0.1399 -1.9107 21 6 8.6761 0.6357 -2.5137 22 6 9.4716 1.3934 -1.4488 23 6 10.7680 1.8811 -2.0426 24 7 11.6361 2.5792 -1.2840 25 8 11.0297 1.6463 -3.2033 26 6 6.6221 -0.7228 -2.9369 27 6 5.3220 -1.2456 -2.3178 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 0.7094 1.1615 3.4845 32 1 0.7377 -2.1443 -1.9995 33 1 2.4630 -2.5817 -1.9865 34 1 1.5296 -2.5968 -0.4710 35 1 4.5260 1.6893 -0.7206 36 1 5.4118 0.3445 0.0437 37 1 7.0255 1.9663 -0.8170 38 1 6.2595 1.9201 -2.4236 39 1 7.5696 -0.4536 -1.0207 40 1 9.2586 -0.2162 -2.8648 41 1 8.4644 1.3008 -3.3508 42 1 8.8891 2.2452 -1.0978 43 1 9.6833 0.7281 -0.6117 44 1 11.4268 2.7673 -0.3557 45 1 12.4704 2.8935 -1.6663 46 1 7.2520 -1.5644 -3.2249 47 1 6.3906 -0.1235 -3.8174 48 1 5.5550 -1.9184 -1.4926 49 1 4.7443 -1.7792 -3.0725 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337774695.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:03 Heat of formation + Delta-G solvation = -133.913548 kcal Electronic energy + Delta-G solvation = -30358.040723 eV Core-core repulsion = 26252.997873 eV Total energy + Delta-G solvation = -4105.042850 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.86970 -38.56670 -36.73310 -36.11837 -35.22403 -34.51790 -33.93555 -32.60941 -31.04789 -30.38910 -29.07701 -25.78770 -25.43295 -25.19148 -23.24840 -22.24980 -20.72768 -20.49792 -20.09269 -18.36023 -17.59643 -17.27647 -16.86034 -16.74965 -16.40782 -15.84887 -15.55134 -14.88950 -14.47594 -14.37971 -14.22654 -14.10703 -13.80600 -13.43960 -13.39898 -13.09491 -12.83879 -12.71008 -12.30918 -11.98823 -11.97746 -11.77679 -11.59131 -11.45381 -11.38104 -11.27242 -11.21924 -11.02433 -10.97275 -10.89478 -10.74312 -10.45260 -10.34469 -10.23695 -10.22338 -10.15433 -10.06471 -10.00249 -9.31230 -8.67436 -8.50384 -7.94022 -6.11607 -4.20107 1.23824 2.38300 3.22175 3.24811 3.28754 3.29306 3.48505 4.11601 4.32677 4.53085 4.57619 4.70379 4.84929 4.90038 5.03634 5.18565 5.19674 5.28202 5.33780 5.42348 5.53359 5.57258 5.64158 5.74078 5.84951 5.87057 5.89568 6.05467 6.09583 6.16194 6.18566 6.22172 6.31944 6.44691 6.48311 6.50320 6.65369 6.83627 6.87886 6.97082 7.00358 7.11546 7.50375 7.61192 7.76697 7.97647 8.03763 8.24691 8.82920 9.46030 10.93310 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011803 B = 0.003310 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.777119 B = 8456.776859 C = 9928.059046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.268 3.732 3 H 0.058 0.942 4 C -0.525 4.525 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.278 1.278 12 N -0.991 5.991 13 C 0.108 3.892 14 S 2.780 3.220 15 O -0.998 6.998 16 O -0.980 6.980 17 N -1.005 6.005 18 C 0.123 3.877 19 C -0.129 4.129 20 C -0.086 4.086 21 C -0.099 4.099 22 C -0.145 4.145 23 C 0.515 3.485 24 N -0.861 5.861 25 O -0.545 6.545 26 C -0.124 4.124 27 C 0.121 3.879 28 H 0.032 0.968 29 H 0.092 0.908 30 H 0.012 0.988 31 H 0.264 0.736 32 H 0.041 0.959 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.402 0.598 45 H 0.399 0.601 46 H 0.071 0.929 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.630 -0.624 -4.137 16.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.166 3.834 3 H 0.075 0.925 4 C -0.564 4.564 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.833 5.833 13 C -0.038 4.038 14 S 2.791 3.209 15 O -0.982 6.982 16 O -0.964 6.964 17 N -0.843 5.843 18 C -0.002 4.002 19 C -0.168 4.168 20 C -0.105 4.105 21 C -0.137 4.137 22 C -0.185 4.185 23 C 0.301 3.699 24 N -0.424 5.424 25 O -0.422 6.422 26 C -0.164 4.164 27 C -0.005 4.005 28 H 0.051 0.949 29 H 0.111 0.889 30 H 0.031 0.969 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.117 0.883 43 H 0.113 0.887 44 H 0.230 0.770 45 H 0.229 0.771 46 H 0.090 0.910 47 H 0.085 0.915 48 H 0.083 0.917 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 15.208 -0.255 -5.518 16.180 hybrid contribution 0.730 -0.444 1.724 1.924 sum 15.938 -0.700 -3.794 16.398 Atomic orbital electron populations 1.22057 0.98058 0.99634 1.00715 1.18702 0.91824 0.92656 0.80268 0.92481 1.21337 1.31835 1.13086 0.90147 0.92003 1.24920 0.94979 0.94977 0.98933 1.69879 1.36170 1.22577 1.23883 0.86599 0.79076 0.79710 0.82182 1.20316 1.21286 1.20314 1.57789 1.64399 1.21340 1.39820 1.21160 0.98839 0.82122 1.01726 1.01868 0.72459 0.73416 0.73151 1.93518 1.86008 1.76376 1.42281 1.93561 1.83770 1.32308 1.86805 1.58187 1.30002 1.35314 1.60821 1.21263 0.94427 0.92509 0.92012 1.21950 0.96052 0.97428 1.01392 1.21148 0.93859 0.96757 0.98704 1.21401 0.94841 1.00209 0.97208 1.21792 0.93587 1.02434 1.00720 1.20905 0.85877 0.76920 0.86219 1.43963 1.23452 1.59089 1.15932 1.90750 1.77323 1.56813 1.17329 1.21889 0.96206 0.99756 0.98502 1.21333 0.92814 0.87816 0.98494 0.94909 0.88931 0.96938 0.92597 0.93994 0.93348 0.90280 0.88855 0.91138 0.90915 0.91567 0.90732 0.91229 0.91154 0.88320 0.88684 0.76999 0.77116 0.90994 0.91471 0.91652 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.97 37.16 0.33 -3.11 16 2 C 0.27 6.45 2.62 -69.08 -0.18 6.26 16 3 H 0.06 1.51 6.91 -51.93 -0.36 1.16 16 4 C -0.52 -13.07 7.99 -34.44 -0.28 -13.35 16 5 H 0.06 1.50 7.33 -52.48 -0.38 1.12 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -23.81 11.32 55.43 0.63 -23.18 16 8 Si 0.90 19.80 29.54 -169.99 -5.02 14.78 16 9 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 12 N -0.99 -20.48 3.12 -115.84 -0.36 -20.85 16 13 C 0.11 1.93 9.28 59.85 0.56 2.48 16 14 S 2.78 54.95 6.10 -107.50 -0.66 54.30 16 15 O -1.00 -20.52 15.80 -57.17 -0.90 -21.42 16 16 O -0.98 -22.26 15.28 -57.17 -0.87 -23.13 16 17 N -1.00 -16.10 3.35 -113.76 -0.38 -16.48 16 18 C 0.12 1.83 6.45 -3.93 -0.03 1.80 16 19 C -0.13 -1.48 5.13 -26.83 -0.14 -1.61 16 20 C -0.09 -0.87 2.15 -90.58 -0.19 -1.06 16 21 C -0.10 -0.94 3.97 -26.73 -0.11 -1.04 16 22 C -0.15 -1.08 5.45 -27.88 -0.15 -1.23 16 23 C 0.52 4.75 8.10 -10.99 -0.09 4.66 16 24 N -0.86 -4.70 8.87 31.22 0.28 -4.43 16 25 O -0.55 -7.55 16.82 5.55 0.09 -7.45 16 26 C -0.12 -1.38 5.36 -26.61 -0.14 -1.52 16 27 C 0.12 1.59 6.48 -3.71 -0.02 1.57 16 28 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 29 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.74 7.79 -51.92 -0.40 0.34 16 34 H 0.08 1.43 7.02 -51.93 -0.36 1.06 16 35 H 0.09 1.56 6.91 -51.93 -0.36 1.21 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 0.67 6.50 -51.93 -0.34 0.33 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 42 H 0.10 0.62 6.53 -51.93 -0.34 0.28 16 43 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.40 1.03 8.83 -40.82 -0.36 0.67 16 45 H 0.40 1.92 8.93 -40.82 -0.36 1.55 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.09 1.17 6.92 -51.93 -0.36 0.81 16 LS Contribution 393.99 15.07 5.94 5.94 Total: -1.00 -33.41 393.99 -9.92 -43.34 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -8.13 Total: 3.18 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -0.53 Total: -4.59 kcal Atomic # 7 Polarization: -65.10 SS G_CDS: 0.16 Total: -64.94 kcal Atomic # 8 Polarization: -50.32 SS G_CDS: -1.68 Total: -52.01 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 16 Polarization: 54.95 SS G_CDS: -0.66 Total: 54.30 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.41 -9.92 -43.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337774695.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.578 kcal (2) G-P(sol) polarization free energy of solvation -33.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds