Wall clock time and date at job start Wed Apr 1 2020 05:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.46922 * 2 1 4 4 C 1.50700 * 109.46752 * 119.99489 * 2 1 3 5 5 H 1.07999 * 119.99784 * 119.99961 * 4 2 1 6 6 C 1.37874 * 120.00137 * 300.00057 * 4 2 1 7 7 N 1.31515 * 120.00228 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99804 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47207 * 60.00439 * 8 6 4 10 10 H 1.48503 * 109.47068 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47367 * 299.99956 * 8 6 4 12 12 N 1.46489 * 109.47192 * 239.99625 * 2 1 3 13 13 C 1.46504 * 120.00051 * 300.00106 * 12 2 1 14 14 S 1.65606 * 120.00129 * 120.00353 * 12 2 1 15 15 O 1.42105 * 106.40008 * 336.45751 * 14 12 2 16 16 O 1.42098 * 106.40370 * 203.53936 * 14 12 2 17 17 N 1.65595 * 107.22013 * 89.99663 * 14 12 2 18 18 C 1.46925 * 120.63264 * 269.72636 * 17 14 12 19 19 C 1.52761 * 109.00629 * 233.58452 * 18 17 14 20 20 C 1.53049 * 109.38118 * 305.58347 * 19 18 17 21 21 C 1.53038 * 109.53520 * 61.24312 * 20 19 18 22 22 H 1.09001 * 109.52705 * 58.60028 * 21 20 19 23 23 C 1.52998 * 109.49726 * 178.68218 * 21 20 19 24 24 C 1.53006 * 109.47188 * 294.84070 * 23 21 20 25 25 C 1.50697 * 109.47173 * 179.97438 * 24 23 21 26 26 N 1.34776 * 120.00222 * 179.97438 * 25 24 23 27 27 O 1.21283 * 120.00008 * 359.97438 * 25 24 23 28 28 C 1.46933 * 120.62849 * 90.00117 * 17 14 12 29 29 H 1.08997 * 109.47190 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47136 * 300.00499 * 1 2 3 31 31 H 1.09007 * 109.46548 * 59.99994 * 1 2 3 32 32 H 0.96996 * 119.99921 * 179.97438 * 7 6 4 33 33 H 1.08999 * 109.47095 * 270.00091 * 13 12 2 34 34 H 1.08991 * 109.46942 * 30.00504 * 13 12 2 35 35 H 1.09009 * 109.46796 * 150.00143 * 13 12 2 36 36 H 1.08997 * 109.58679 * 353.41272 * 18 17 14 37 37 H 1.09000 * 109.58887 * 113.84231 * 18 17 14 38 38 H 1.09001 * 109.56870 * 185.55054 * 19 18 17 39 39 H 1.08993 * 109.39336 * 65.50906 * 19 18 17 40 40 H 1.08995 * 109.45784 * 301.22004 * 20 19 18 41 41 H 1.09001 * 109.45825 * 181.26162 * 20 19 18 42 42 H 1.09008 * 109.47087 * 54.83605 * 23 21 20 43 43 H 1.08997 * 109.47501 * 174.83766 * 23 21 20 44 44 H 1.09003 * 109.46749 * 299.99254 * 24 23 21 45 45 H 1.08997 * 109.47148 * 59.99479 * 24 23 21 46 46 H 0.97005 * 119.99561 * 359.97438 * 26 25 24 47 47 H 0.96993 * 120.00249 * 180.02562 * 26 25 24 48 48 H 1.09001 * 109.58300 * 246.15571 * 28 17 14 49 49 H 1.09001 * 109.58413 * 6.58202 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9435 0.8304 2.6034 8 14 2.3212 -1.1202 4.0080 9 1 3.8062 -1.1207 4.0084 10 1 1.8258 -0.4203 5.2205 11 1 1.8256 -2.5200 4.0079 12 7 2.0184 -0.6906 -1.1960 13 6 1.6644 -2.0933 -1.4278 14 16 2.9705 0.1141 -2.2861 15 8 2.6905 1.4972 -2.1193 16 8 2.8229 -0.5647 -3.5258 17 7 4.5438 -0.1043 -1.8179 18 6 5.1899 0.8433 -0.8995 19 6 6.4898 1.3395 -1.5301 20 6 7.3603 0.1395 -1.9105 21 6 6.6222 -0.7233 -2.9366 22 1 6.3906 -0.1241 -3.8172 23 6 7.5063 -1.9047 -3.3408 24 6 8.7472 -1.3868 -4.0708 25 6 9.6184 -2.5504 -4.4684 26 7 10.7732 -2.3331 -5.1284 27 8 9.2803 -3.6825 -4.1944 28 6 5.3220 -1.2460 -2.3176 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 0.7089 1.1616 3.4843 33 1 2.4157 -2.7377 -0.9714 34 1 0.6905 -2.3002 -0.9846 35 1 1.6239 -2.2853 -2.5001 36 1 4.5261 1.6891 -0.7206 37 1 5.4118 0.3443 0.0439 38 1 7.0256 1.9660 -0.8170 39 1 6.2601 1.9200 -2.4235 40 1 7.5696 -0.4539 -1.0205 41 1 8.2978 0.4925 -2.3401 42 1 7.8115 -2.4521 -2.4489 43 1 6.9471 -2.5681 -4.0006 44 1 8.4421 -0.8396 -4.9628 45 1 9.3065 -0.7234 -3.4110 46 1 11.0434 -1.4277 -5.3478 47 1 11.3337 -3.0821 -5.3846 48 1 5.5549 -1.9187 -1.4922 49 1 4.7452 -1.7782 -3.0740 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337792703.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:36 Heat of formation + Delta-G solvation = -158.347426 kcal Electronic energy + Delta-G solvation = -30486.164427 eV Core-core repulsion = 26380.062044 eV Total energy + Delta-G solvation = -4106.102383 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.60711 -39.55288 -38.40711 -37.88450 -36.90694 -35.33689 -34.54724 -34.50311 -32.79209 -30.91225 -30.70193 -27.31570 -26.97677 -26.04413 -25.18726 -22.91759 -22.48148 -21.37713 -20.82957 -19.73403 -18.73270 -18.46105 -18.31041 -18.13797 -17.51806 -17.19213 -16.61988 -16.49971 -15.77421 -15.56227 -15.21439 -15.17803 -14.98682 -14.86032 -14.63542 -14.47937 -14.31545 -13.76389 -13.66174 -13.46431 -13.38242 -13.21405 -13.02252 -12.93583 -12.90176 -12.76363 -12.66072 -12.62093 -12.25350 -12.17264 -12.11236 -11.89765 -11.80791 -11.65582 -11.40216 -11.19754 -11.10865 -10.94721 -10.58097 -10.48754 -9.92489 -9.61220 -8.08072 -6.22948 -0.32125 1.46453 1.47325 1.54614 1.73296 1.98146 2.45625 2.53871 2.72537 3.19909 3.35698 3.67550 3.85516 3.93443 4.02750 4.14144 4.18692 4.22438 4.43557 4.48316 4.50474 4.64096 4.70643 4.76831 4.80412 4.82998 4.86785 4.93443 4.94809 5.00699 5.02315 5.09265 5.14287 5.16517 5.20352 5.29896 5.36182 5.46698 5.57082 5.59425 5.65061 5.80067 5.88764 5.96764 6.11280 6.30274 6.54761 6.85712 7.43878 7.46712 8.96205 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013727 B = 0.003179 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.299564 B = 8806.427602 C = 9513.563157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.275 3.725 3 H 0.025 0.975 4 C -0.527 4.527 5 H 0.064 0.936 6 C 0.019 3.981 7 N -0.917 5.917 8 Si 0.957 3.043 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.273 1.273 12 N -1.000 6.000 13 C 0.096 3.904 14 S 2.790 3.210 15 O -1.014 7.014 16 O -1.005 7.005 17 N -0.999 5.999 18 C 0.116 3.884 19 C -0.126 4.126 20 C -0.108 4.108 21 C -0.092 4.092 22 H 0.078 0.922 23 C -0.094 4.094 24 C -0.137 4.137 25 C 0.510 3.490 26 N -0.842 5.842 27 O -0.600 6.600 28 C 0.117 3.883 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.018 0.982 32 H 0.264 0.736 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.116 0.884 45 H 0.124 0.876 46 H 0.419 0.581 47 H 0.403 0.597 48 H 0.072 0.928 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.221 -1.892 -12.138 22.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.170 3.830 3 H 0.042 0.958 4 C -0.567 4.567 5 H 0.082 0.918 6 C -0.181 4.181 7 N -0.557 5.557 8 Si 0.783 3.217 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.198 1.198 12 N -0.841 5.841 13 C -0.050 4.050 14 S 2.801 3.199 15 O -0.998 6.998 16 O -0.989 6.989 17 N -0.840 5.840 18 C -0.009 4.009 19 C -0.165 4.165 20 C -0.146 4.146 21 C -0.113 4.113 22 H 0.096 0.904 23 C -0.133 4.133 24 C -0.176 4.176 25 C 0.296 3.704 26 N -0.405 5.405 27 O -0.481 6.481 28 C -0.008 4.008 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.111 0.889 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.115 0.885 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.135 0.865 45 H 0.141 0.859 46 H 0.250 0.750 47 H 0.234 0.766 48 H 0.091 0.909 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 18.439 -1.905 -12.514 22.365 hybrid contribution 0.118 -0.416 1.159 1.238 sum 18.557 -2.322 -11.354 21.878 Atomic orbital electron populations 1.21968 0.98059 1.00028 0.99989 1.18370 0.91830 0.91299 0.81462 0.95751 1.21543 1.31526 1.12922 0.90661 0.91770 1.25652 0.95196 0.95579 1.01690 1.70004 1.37370 1.23920 1.24359 0.85631 0.78812 0.78614 0.78638 1.19553 1.21396 1.19795 1.57678 1.65371 1.22378 1.38642 1.21405 1.02100 0.80558 1.00901 1.01361 0.73105 0.72493 0.72905 1.93515 1.84691 1.34389 1.87215 1.93488 1.86521 1.76290 1.42606 1.57923 1.28722 1.36397 1.60911 1.21399 0.95810 0.91387 0.92353 1.21811 0.94619 0.98635 1.01479 1.21616 0.98529 0.95601 0.98823 1.21470 0.93728 0.97067 0.99008 0.90356 1.21230 0.95008 0.96490 1.00558 1.21747 0.95925 0.96206 1.03744 1.21229 0.82181 0.90712 0.76254 1.43805 1.23088 1.13913 1.59711 1.90748 1.73771 1.26729 1.56868 1.21624 0.93315 0.87023 0.98814 0.93706 0.91024 0.96284 0.92722 0.92674 0.90820 0.90640 0.91582 0.91416 0.88897 0.91775 0.91520 0.88518 0.91788 0.92413 0.86541 0.85850 0.74993 0.76590 0.90935 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.87 8.95 71.98 0.64 -6.23 16 2 C 0.27 13.69 2.62 44.25 0.12 13.81 16 3 H 0.02 1.38 6.91 -2.38 -0.02 1.37 16 4 C -0.53 -27.08 8.37 25.60 0.21 -26.86 16 5 H 0.06 3.20 7.65 -2.91 -0.02 3.18 16 6 C 0.02 0.97 5.30 84.65 0.45 1.42 16 7 N -0.92 -50.93 11.32 21.45 0.24 -50.69 16 8 Si 0.96 41.56 29.54 68.60 2.03 43.59 16 9 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 10 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 12 N -1.00 -42.32 3.12 -520.45 -1.62 -43.95 16 13 C 0.10 3.43 9.90 127.77 1.27 4.70 16 14 S 2.79 112.29 6.14 -56.49 -0.35 111.95 16 15 O -1.01 -47.63 15.28 -128.00 -1.96 -49.58 16 16 O -1.00 -40.90 15.33 -128.00 -1.96 -42.86 16 17 N -1.00 -32.44 3.35 -513.84 -1.72 -34.16 16 18 C 0.12 3.53 6.45 86.22 0.56 4.09 16 19 C -0.13 -2.67 6.07 30.53 0.19 -2.48 16 20 C -0.11 -1.78 4.96 30.62 0.15 -1.62 16 21 C -0.09 -1.79 2.34 -10.72 -0.03 -1.81 16 22 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 23 C -0.09 -1.66 3.97 30.60 0.12 -1.54 16 24 C -0.14 -1.50 5.46 29.85 0.16 -1.33 16 25 C 0.51 8.09 8.10 87.66 0.71 8.80 16 26 N -0.84 -6.19 8.87 -173.53 -1.54 -7.73 16 27 O -0.60 -16.25 16.82 -3.04 -0.05 -16.30 16 28 C 0.12 3.09 5.76 86.36 0.50 3.59 16 29 H 0.04 2.02 6.66 -2.39 -0.02 2.00 16 30 H 0.07 3.81 6.07 -2.39 -0.01 3.80 16 31 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 34 H 0.07 2.63 6.43 -2.39 -0.02 2.61 16 35 H 0.08 2.45 7.02 -2.38 -0.02 2.43 16 36 H 0.07 2.36 6.91 -2.39 -0.02 2.35 16 37 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 41 H 0.10 0.96 6.51 -2.39 -0.02 0.95 16 42 H 0.06 1.26 8.10 -2.38 -0.02 1.24 16 43 H 0.06 1.21 8.10 -2.39 -0.02 1.19 16 44 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.12 0.72 6.54 -2.39 -0.02 0.70 16 46 H 0.42 0.11 8.83 -92.70 -0.82 -0.71 16 47 H 0.40 2.72 8.93 -92.71 -0.83 1.89 16 48 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.08 2.26 6.92 -2.39 -0.02 2.24 16 Total: -1.00 -74.65 392.51 -2.56 -77.21 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -0.68 Total: 18.00 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 5.05 Total: -5.47 kcal Atomic # 7 Polarization: -131.88 SS G_CDS: -4.64 Total: -136.53 kcal Atomic # 8 Polarization: -104.78 SS G_CDS: -3.97 Total: -108.75 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 16 Polarization: 112.29 SS G_CDS: -0.35 Total: 111.95 kcal Total: -74.65 -2.56 -77.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337792703.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.139 kcal (2) G-P(sol) polarization free energy of solvation -74.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds