Wall clock time and date at job start Wed Apr 1 2020 05:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47084 * 2 1 4 4 C 1.50700 * 109.46980 * 240.00046 * 2 1 3 5 5 H 1.07995 * 119.99690 * 245.45605 * 4 2 1 6 6 C 1.37870 * 120.00088 * 65.46149 * 4 2 1 7 7 N 1.31518 * 120.00261 * 9.59610 * 6 4 2 8 8 Si 1.86801 * 120.00015 * 189.60447 * 6 4 2 9 9 H 1.48499 * 109.47270 * 84.99121 * 8 6 4 10 10 H 1.48507 * 109.47003 * 204.99398 * 8 6 4 11 11 H 1.48499 * 109.46838 * 324.98934 * 8 6 4 12 12 N 1.46497 * 109.47221 * 119.99955 * 2 1 3 13 13 C 1.46501 * 119.99850 * 59.99730 * 12 2 1 14 14 S 1.65599 * 120.00555 * 239.99979 * 12 2 1 15 15 O 1.42101 * 106.39828 * 23.53869 * 14 12 2 16 16 O 1.42100 * 106.40744 * 156.45779 * 14 12 2 17 17 N 1.65593 * 107.21855 * 269.99980 * 14 12 2 18 18 C 1.46924 * 120.63111 * 269.71546 * 17 14 12 19 19 C 1.53632 * 108.54121 * 126.37053 * 18 17 14 20 20 C 1.53042 * 109.24338 * 54.85639 * 19 18 17 21 21 C 1.53040 * 109.53669 * 298.50970 * 20 19 18 22 22 H 1.08997 * 109.50090 * 301.41730 * 21 20 19 23 23 C 1.53002 * 109.52094 * 181.33049 * 21 20 19 24 24 C 1.52999 * 109.46963 * 65.14767 * 23 21 20 25 25 C 1.50696 * 109.47292 * 179.97438 * 24 23 21 26 26 N 1.34774 * 120.00364 * 180.02562 * 25 24 23 27 27 O 1.21284 * 120.00030 * 0.02562 * 25 24 23 28 28 C 1.46936 * 120.63136 * 89.99677 * 17 14 12 29 29 H 1.09003 * 109.46772 * 303.29445 * 1 2 3 30 30 H 1.09000 * 109.47131 * 63.28775 * 1 2 3 31 31 H 1.09000 * 109.47529 * 183.29532 * 1 2 3 32 32 H 0.96998 * 120.00235 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.47398 * 270.00125 * 13 12 2 34 34 H 1.09004 * 109.47539 * 150.00374 * 13 12 2 35 35 H 1.09005 * 109.47238 * 30.00432 * 13 12 2 36 36 H 1.09002 * 109.58380 * 246.19860 * 18 17 14 37 37 H 1.08995 * 109.58768 * 6.63137 * 18 17 14 38 38 H 1.09000 * 109.63121 * 294.86189 * 19 18 17 39 39 H 1.08996 * 109.43058 * 174.72572 * 19 18 17 40 40 H 1.08991 * 109.45781 * 178.48952 * 20 19 18 41 41 H 1.08997 * 109.44518 * 58.52540 * 20 19 18 42 42 H 1.09001 * 109.46794 * 185.14370 * 23 21 20 43 43 H 1.08994 * 109.47316 * 305.14616 * 23 21 20 44 44 H 1.08999 * 109.47010 * 300.00228 * 24 23 21 45 45 H 1.09010 * 109.46933 * 60.00016 * 24 23 21 46 46 H 0.96998 * 119.99542 * 0.02562 * 26 25 24 47 47 H 0.97002 * 120.00075 * 180.02562 * 26 25 24 48 48 H 1.09007 * 109.58338 * 353.37254 * 28 17 14 49 49 H 1.08995 * 109.58380 * 113.65341 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5785 -1.6370 -1.1338 6 6 1.7945 -0.1774 -2.4795 7 7 1.3000 1.0359 -2.5935 8 14 2.1747 -1.1786 -4.0101 9 1 1.0220 -2.0608 -4.3235 10 1 2.4217 -0.2622 -5.1523 11 1 3.3827 -2.0086 -3.7712 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4280 14 16 2.9704 0.1141 2.2863 15 8 2.6904 1.4972 2.1193 16 8 2.8228 -0.5646 3.5259 17 7 4.5437 -0.1043 1.8181 18 6 5.3237 -1.2425 2.3227 19 6 5.9050 -2.0066 1.1232 20 6 6.7022 -1.0380 0.2466 21 6 5.7724 0.0556 -0.2842 22 1 4.9632 -0.4001 -0.8548 23 6 6.5627 1.0047 -1.1872 24 6 7.0409 0.2480 -2.4280 25 6 7.8188 1.1829 -3.3178 26 7 8.3402 0.7329 -4.4763 27 8 7.9757 2.3404 -2.9915 28 6 5.1880 0.8399 0.8949 29 1 -0.3633 0.5642 0.8590 30 1 -0.3633 0.4619 -0.9180 31 1 -0.3634 -1.0259 0.0591 32 1 1.1324 1.4108 -3.4723 33 1 0.7375 -2.1444 1.9994 34 1 2.4628 -2.5819 1.9864 35 1 1.5294 -2.5969 0.4708 36 1 6.1337 -0.8787 2.9550 37 1 4.6758 -1.9028 2.8990 38 1 5.0946 -2.4429 0.5394 39 1 6.5628 -2.7982 1.4818 40 1 7.1385 -1.5818 -0.5912 41 1 7.4970 -0.5835 0.8380 42 1 5.9233 1.8335 -1.4911 43 1 7.4243 1.3911 -0.6428 44 1 7.6802 -0.5809 -2.1241 45 1 6.1792 -0.1384 -2.9725 46 1 8.2144 -0.1928 -4.7375 47 1 8.8412 1.3346 -5.0489 48 1 4.4503 1.5541 0.5289 49 1 5.9854 1.3717 1.4139 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337792704.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:39 Heat of formation + Delta-G solvation = -159.768248 kcal Electronic energy + Delta-G solvation = -31563.602519 eV Core-core repulsion = 27457.438525 eV Total energy + Delta-G solvation = -4106.163994 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.61438 -39.49470 -38.38847 -37.82836 -36.89331 -35.30785 -34.57780 -34.42382 -32.67823 -30.99569 -30.68171 -27.19349 -26.97595 -25.98340 -25.19232 -22.82705 -22.56892 -21.36455 -20.75816 -19.72168 -18.73994 -18.39713 -18.26292 -18.16824 -17.54884 -17.16846 -16.57278 -16.49060 -15.72622 -15.55355 -15.18470 -15.07282 -14.85354 -14.83789 -14.66104 -14.39933 -14.24427 -13.76361 -13.69608 -13.44559 -13.38356 -13.24679 -13.00041 -12.92145 -12.85654 -12.78424 -12.60664 -12.57779 -12.22434 -12.17018 -12.11919 -11.88091 -11.77917 -11.62109 -11.34028 -11.16315 -11.05961 -10.96295 -10.61679 -10.42223 -9.86104 -9.59382 -8.05170 -6.15301 -0.30047 1.46045 1.50388 1.57792 1.69071 2.00245 2.49380 2.59898 2.69477 3.25925 3.38158 3.70976 3.89089 3.98103 4.04427 4.15550 4.22097 4.28574 4.44687 4.50807 4.53998 4.67261 4.71932 4.79435 4.80642 4.83180 4.90502 4.93199 4.98369 4.99746 5.04412 5.12591 5.16270 5.23523 5.27491 5.38362 5.42322 5.51651 5.57359 5.67891 5.70996 5.78499 5.90852 5.94063 6.11547 6.33078 6.49913 6.92815 7.39900 7.52346 9.02033 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008900 B = 0.005587 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3145.335630 B = 5010.236028 C = 6919.941384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.273 3.727 3 H 0.023 0.977 4 C -0.516 4.516 5 H 0.074 0.926 6 C 0.021 3.979 7 N -0.921 5.921 8 Si 0.947 3.053 9 H -0.282 1.282 10 H -0.296 1.296 11 H -0.249 1.249 12 N -0.995 5.995 13 C 0.101 3.899 14 S 2.788 3.212 15 O -1.021 7.021 16 O -1.006 7.006 17 N -1.000 6.000 18 C 0.114 3.886 19 C -0.129 4.129 20 C -0.105 4.105 21 C -0.097 4.097 22 H 0.070 0.930 23 C -0.092 4.092 24 C -0.137 4.137 25 C 0.511 3.489 26 N -0.840 5.840 27 O -0.597 6.597 28 C 0.132 3.868 29 H 0.017 0.983 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.260 0.740 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.059 0.941 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.037 0.963 43 H 0.072 0.928 44 H 0.131 0.869 45 H 0.096 0.904 46 H 0.418 0.582 47 H 0.405 0.595 48 H 0.053 0.947 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.375 -10.915 0.724 18.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.169 3.831 3 H 0.041 0.959 4 C -0.555 4.555 5 H 0.092 0.908 6 C -0.179 4.179 7 N -0.560 5.560 8 Si 0.772 3.228 9 H -0.208 1.208 10 H -0.223 1.223 11 H -0.172 1.172 12 N -0.837 5.837 13 C -0.044 4.044 14 S 2.799 3.201 15 O -1.005 7.005 16 O -0.990 6.990 17 N -0.840 5.840 18 C -0.011 4.011 19 C -0.167 4.167 20 C -0.142 4.142 21 C -0.117 4.117 22 H 0.088 0.912 23 C -0.131 4.131 24 C -0.176 4.176 25 C 0.298 3.702 26 N -0.404 5.404 27 O -0.478 6.478 28 C 0.007 3.993 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.119 0.881 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.056 0.944 43 H 0.091 0.909 44 H 0.149 0.851 45 H 0.115 0.885 46 H 0.249 0.751 47 H 0.236 0.764 48 H 0.072 0.928 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 14.010 -9.624 1.758 17.088 hybrid contribution -0.334 0.000 -1.749 1.780 sum 13.676 -9.625 0.010 16.723 Atomic orbital electron populations 1.21894 0.98420 0.99867 0.99163 1.18380 0.91343 0.91645 0.81770 0.95936 1.21466 1.35493 1.08439 0.90117 0.90775 1.25643 0.95364 0.95164 1.01731 1.70115 1.45985 1.15519 1.24342 0.85741 0.79359 0.78612 0.79040 1.20798 1.22293 1.17240 1.57663 1.65165 1.22357 1.38499 1.21379 1.00235 0.80526 1.02276 1.01440 0.73225 0.72422 0.72993 1.93521 1.84795 1.34953 1.87234 1.93500 1.86603 1.76259 1.42622 1.57967 1.28983 1.36918 1.60158 1.21769 0.96212 0.86352 0.96731 1.21976 1.00372 0.98210 0.96186 1.21559 0.97118 0.95616 0.99889 1.21467 0.98592 0.96580 0.95051 0.91165 1.21190 0.99546 0.97244 0.95083 1.21725 1.01144 0.98926 0.95845 1.21156 0.78318 0.88253 0.82511 1.43761 1.57265 1.17037 1.22362 1.90725 1.61397 1.20977 1.74679 1.21359 0.97349 0.90459 0.90178 0.96365 0.93006 0.92932 0.93123 0.93356 0.90789 0.90145 0.89650 0.89776 0.92199 0.88143 0.89679 0.90704 0.94388 0.90923 0.85110 0.88538 0.75070 0.76437 0.92818 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.30 9.12 71.98 0.66 -5.64 16 2 C 0.27 13.16 2.49 44.25 0.11 13.27 16 3 H 0.02 1.29 6.85 -2.39 -0.02 1.27 16 4 C -0.52 -24.75 8.01 25.60 0.20 -24.54 16 5 H 0.07 3.33 7.16 -2.91 -0.02 3.31 16 6 C 0.02 1.04 5.17 84.65 0.44 1.48 16 7 N -0.92 -50.92 12.16 21.45 0.26 -50.65 16 8 Si 0.95 38.87 29.55 68.60 2.03 40.89 16 9 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 10 H -0.30 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.25 -9.11 7.11 99.48 0.71 -8.40 16 12 N -1.00 -40.26 3.12 -520.44 -1.62 -41.88 16 13 C 0.10 3.31 9.21 127.77 1.18 4.49 16 14 S 2.79 112.03 6.06 -56.49 -0.34 111.69 16 15 O -1.02 -49.71 15.42 -128.00 -1.97 -51.68 16 16 O -1.01 -40.62 15.92 -128.00 -2.04 -42.66 16 17 N -1.00 -32.06 3.34 -512.25 -1.71 -33.77 16 18 C 0.11 2.67 6.41 86.51 0.55 3.22 16 19 C -0.13 -2.43 6.10 30.82 0.19 -2.24 16 20 C -0.10 -1.96 4.96 30.62 0.15 -1.81 16 21 C -0.10 -2.65 2.34 -10.72 -0.03 -2.68 16 22 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 23 C -0.09 -2.51 3.98 30.59 0.12 -2.39 16 24 C -0.14 -2.91 5.46 29.85 0.16 -2.75 16 25 C 0.51 12.52 8.10 87.66 0.71 13.23 16 26 N -0.84 -12.64 8.87 -173.54 -1.54 -14.18 16 27 O -0.60 -20.76 16.82 -3.04 -0.05 -20.81 16 28 C 0.13 4.28 5.66 86.36 0.49 4.77 16 29 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.05 2.66 6.84 -2.39 -0.02 2.64 16 31 H 0.05 2.22 7.56 -2.39 -0.02 2.20 16 32 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 33 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.07 2.02 7.79 -2.38 -0.02 2.00 16 35 H 0.08 2.60 6.92 -2.38 -0.02 2.58 16 36 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.08 1.97 7.12 -2.39 -0.02 1.95 16 38 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.08 1.23 6.51 -2.39 -0.02 1.22 16 41 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.04 1.31 8.10 -2.39 -0.02 1.29 16 43 H 0.07 1.88 8.10 -2.39 -0.02 1.86 16 44 H 0.13 1.77 6.54 -2.39 -0.02 1.76 16 45 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 46 H 0.42 3.41 8.83 -92.71 -0.82 2.59 16 47 H 0.40 5.40 8.93 -92.71 -0.83 4.58 16 48 H 0.05 2.16 7.13 -2.38 -0.02 2.14 16 49 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -74.16 395.53 -2.74 -76.90 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: -0.68 Total: 27.76 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 4.94 Total: -1.60 kcal Atomic # 7 Polarization: -135.87 SS G_CDS: -4.61 Total: -140.49 kcal Atomic # 8 Polarization: -111.09 SS G_CDS: -4.06 Total: -115.16 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.89 kcal Atomic # 16 Polarization: 112.03 SS G_CDS: -0.34 Total: 111.69 kcal Total: -74.16 -2.74 -76.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337792704.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.869 kcal (2) G-P(sol) polarization free energy of solvation -74.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds