Wall clock time and date at job start Wed Apr 1 2020 05:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21283 * 119.99503 * 2 1 4 4 N 1.34773 * 120.00081 * 179.72727 * 2 1 3 5 5 C 1.46506 * 119.99968 * 180.02562 * 4 2 1 6 6 C 1.52992 * 109.47161 * 179.97438 * 5 4 2 7 7 H 1.09004 * 109.49540 * 305.06028 * 6 5 4 8 8 C 1.53037 * 109.50219 * 65.15837 * 6 5 4 9 9 C 1.53041 * 109.54113 * 181.31938 * 8 6 5 10 10 C 1.53189 * 109.31044 * 298.63269 * 9 8 6 11 11 N 1.46931 * 108.77628 * 54.63439 * 10 9 8 12 12 S 1.65600 * 120.63028 * 126.40856 * 11 10 9 13 13 O 1.42103 * 106.40057 * 23.52653 * 12 11 10 14 14 O 1.42108 * 106.40154 * 156.43887 * 12 11 10 15 15 N 1.65598 * 107.22045 * 269.98124 * 12 11 10 16 16 C 1.46497 * 119.99808 * 269.99912 * 15 12 11 17 17 C 1.46498 * 119.99610 * 90.00271 * 15 12 11 18 18 H 1.08994 * 109.47806 * 359.97438 * 17 15 12 19 19 C 1.53001 * 109.46710 * 239.99686 * 17 15 12 20 20 C 1.50704 * 109.47222 * 120.00085 * 17 15 12 21 21 H 1.08003 * 119.99694 * 359.97438 * 20 17 15 22 22 C 1.37872 * 120.00190 * 179.97438 * 20 17 15 23 23 N 1.31519 * 119.99817 * 359.97438 * 22 20 17 24 24 Si 1.86798 * 120.00271 * 179.97438 * 22 20 17 25 25 H 1.48507 * 109.46822 * 60.00047 * 24 22 20 26 26 H 1.48497 * 109.47250 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46964 * 300.00366 * 24 22 20 28 28 C 1.46924 * 118.73880 * 306.39515 * 11 10 9 29 29 H 1.08995 * 109.47415 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46564 * 120.00303 * 1 2 3 31 31 H 1.08998 * 109.47012 * 239.99357 * 1 2 3 32 32 H 0.96998 * 120.00525 * 359.97438 * 4 2 1 33 33 H 1.09004 * 109.46587 * 299.99661 * 5 4 2 34 34 H 1.08998 * 109.47213 * 59.99069 * 5 4 2 35 35 H 1.09004 * 109.45763 * 301.33616 * 8 6 5 36 36 H 1.09000 * 109.45575 * 61.29416 * 8 6 5 37 37 H 1.08998 * 109.49454 * 178.68470 * 9 8 6 38 38 H 1.09003 * 109.49724 * 58.58409 * 9 8 6 39 39 H 1.08999 * 109.59104 * 294.85292 * 10 9 8 40 40 H 1.08998 * 109.70878 * 174.49217 * 10 9 8 41 41 H 1.08998 * 109.46911 * 90.00362 * 16 15 12 42 42 H 1.09004 * 109.47173 * 210.00078 * 16 15 12 43 43 H 1.08996 * 109.47871 * 329.99936 * 16 15 12 44 44 H 1.08998 * 109.47177 * 60.00436 * 19 17 15 45 45 H 1.09003 * 109.47046 * 180.02562 * 19 17 15 46 46 H 1.09002 * 109.47477 * 299.99838 * 19 17 15 47 47 H 0.97003 * 119.99898 * 180.02562 * 23 22 20 48 48 H 1.09000 * 109.58497 * 293.81784 * 28 11 10 49 49 H 1.09007 * 109.70482 * 173.46511 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0056 5 6 3.6460 -1.1671 0.0061 6 6 4.1560 -2.6095 0.0135 7 1 3.7205 -3.1450 0.8571 8 6 3.7555 -3.2997 -1.2923 9 6 4.2366 -4.7524 -1.2720 10 6 5.7642 -4.7785 -1.1602 11 7 6.1659 -3.9932 0.0149 12 16 7.1450 -4.6531 1.1761 13 8 7.8612 -5.7063 0.5460 14 8 7.7810 -3.5639 1.8310 15 7 6.1602 -5.3647 2.3012 16 6 5.6839 -4.5921 3.4511 17 6 5.7654 -6.7670 2.1466 18 1 6.2128 -7.1726 1.2393 19 6 4.2413 -6.8598 2.0486 20 6 6.2411 -7.5572 3.3384 21 1 6.7837 -7.0642 4.1315 22 6 5.9837 -8.9094 3.4164 23 7 5.3225 -9.5097 2.4508 24 14 6.5740 -9.8890 4.8933 25 1 5.9648 -9.3360 6.1296 26 1 6.1726 -11.3102 4.7372 27 1 8.0533 -9.7993 4.9876 28 6 5.6827 -2.6114 0.1400 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3632 -0.5139 -0.8900 31 1 -0.3633 -0.5139 0.8899 32 1 1.6960 -2.0072 0.0099 33 1 4.0096 -0.6573 -0.8861 34 1 4.0090 -0.6491 0.8938 35 1 2.6706 -3.2780 -1.3966 36 1 4.2115 -2.7778 -2.1336 37 1 3.9307 -5.2498 -2.1923 38 1 3.8003 -5.2682 -0.4166 39 1 6.2039 -4.3437 -2.0578 40 1 6.1070 -5.8070 -1.0469 41 1 4.7402 -4.1087 3.1983 42 1 5.5344 -5.2590 4.3003 43 1 6.4225 -3.8337 3.7105 44 1 3.8972 -6.2884 1.1866 45 1 3.9475 -7.9032 1.9340 46 1 3.7935 -6.4542 2.9558 47 1 5.1411 -10.4610 2.5058 48 1 6.1156 -1.9999 -0.6517 49 1 5.9695 -2.2082 1.1113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337956331.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:45 Heat of formation + Delta-G solvation = -147.330680 kcal Electronic energy + Delta-G solvation = -30886.039792 eV Core-core repulsion = 26780.415131 eV Total energy + Delta-G solvation = -4105.624661 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.74364 -39.53826 -38.41575 -37.85414 -36.90378 -36.09188 -34.51018 -33.30214 -32.62101 -30.88946 -30.47123 -27.22841 -27.00703 -26.70078 -25.43502 -23.18961 -22.48608 -21.55978 -21.04036 -19.79081 -18.92625 -18.60099 -18.08231 -17.75106 -17.32338 -16.97349 -16.51598 -16.49644 -15.67439 -15.60199 -15.23041 -15.12301 -14.96677 -14.82452 -14.55307 -14.33934 -14.08709 -13.76299 -13.66939 -13.55521 -13.44074 -13.25644 -13.15515 -13.00377 -12.96909 -12.89742 -12.79337 -12.73136 -12.62414 -12.28161 -12.15612 -12.02414 -11.94551 -11.73844 -11.51089 -11.36909 -11.11697 -10.94804 -10.48846 -10.08477 -9.94918 -9.61761 -8.11302 -6.24264 -0.37044 1.42320 1.44408 1.50973 1.70720 1.97975 2.36649 2.42591 2.57172 3.16917 3.34244 3.58326 3.82598 3.88124 3.99964 4.08127 4.17834 4.22226 4.34937 4.44336 4.55356 4.58617 4.65678 4.73193 4.74798 4.75561 4.80517 4.87016 4.91092 4.96183 5.02564 5.05001 5.13426 5.17479 5.21743 5.23822 5.28500 5.32923 5.48166 5.54510 5.61365 5.62847 5.83361 5.90857 6.18303 6.32546 6.62764 6.82742 7.31946 7.44305 8.92146 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014350 B = 0.003264 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.786056 B = 8577.040542 C = 9170.958660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.502 3.498 3 O -0.605 6.605 4 N -0.717 5.717 5 C 0.129 3.871 6 C -0.105 4.105 7 H 0.085 0.915 8 C -0.102 4.102 9 C -0.132 4.132 10 C 0.115 3.885 11 N -0.999 5.999 12 S 2.787 3.213 13 O -1.015 7.015 14 O -1.009 7.009 15 N -0.995 5.995 16 C 0.095 3.905 17 C 0.277 3.723 18 H 0.023 0.977 19 C -0.130 4.130 20 C -0.542 4.542 21 H 0.054 0.946 22 C 0.021 3.979 23 N -0.910 5.910 24 Si 0.951 3.049 25 H -0.267 1.267 26 H -0.281 1.281 27 H -0.282 1.282 28 C 0.124 3.876 29 H 0.085 0.915 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.416 0.584 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.062 0.938 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.042 0.958 45 H 0.064 0.936 46 H 0.037 0.963 47 H 0.264 0.736 48 H 0.088 0.912 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.044 13.738 -8.137 20.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.292 3.708 3 O -0.487 6.487 4 N -0.370 5.370 5 C 0.004 3.996 6 C -0.125 4.125 7 H 0.103 0.897 8 C -0.139 4.139 9 C -0.171 4.171 10 C -0.010 4.010 11 N -0.840 5.840 12 S 2.798 3.202 13 O -0.999 6.999 14 O -0.993 6.993 15 N -0.837 5.837 16 C -0.051 4.051 17 C 0.173 3.827 18 H 0.040 0.960 19 C -0.190 4.190 20 C -0.582 4.582 21 H 0.072 0.928 22 C -0.179 4.179 23 N -0.549 5.549 24 Si 0.776 3.224 25 H -0.192 1.192 26 H -0.206 1.206 27 H -0.208 1.208 28 C -0.002 4.002 29 H 0.104 0.896 30 H 0.130 0.870 31 H 0.127 0.873 32 H 0.254 0.746 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.061 0.939 45 H 0.083 0.917 46 H 0.057 0.943 47 H 0.074 0.926 48 H 0.106 0.894 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.696 14.312 -8.170 19.647 hybrid contribution 0.218 -1.330 0.919 1.632 sum -10.478 12.982 -7.250 18.191 Atomic orbital electron populations 1.21929 0.88408 1.05895 1.06404 1.21560 0.92243 0.82797 0.74246 1.90711 1.72297 1.33391 1.52250 1.45994 1.07107 1.09276 1.74594 1.21194 0.80350 0.95956 1.02106 1.21674 0.95087 0.95070 1.00660 0.89650 1.21503 1.01899 0.94275 0.96259 1.21941 0.93668 0.98053 1.03391 1.21570 0.97001 0.94898 0.87562 1.58034 1.68198 1.22087 1.35639 1.01486 0.74051 0.71786 0.72866 1.93534 1.71396 1.57888 1.77070 1.93490 1.74449 1.55695 1.75693 1.57607 1.68466 1.20960 1.36645 1.21426 0.99359 0.95162 0.89163 1.18349 0.93249 0.75240 0.95838 0.95955 1.21903 0.96333 1.02037 0.98688 1.21654 1.36126 0.93983 1.06438 0.92821 1.25564 0.95181 0.98427 0.98721 1.69952 1.40692 1.10887 1.33386 0.85733 0.78445 0.77834 0.80342 1.19175 1.20600 1.20751 1.21467 0.94127 0.80933 1.03640 0.89584 0.86982 0.87334 0.74624 0.91389 0.92284 0.89668 0.90740 0.88971 0.91971 0.89476 0.91708 0.91389 0.91147 0.91421 0.93936 0.91714 0.94343 0.92627 0.89401 0.89797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 10.32 71.24 0.74 -0.62 16 2 C 0.50 8.64 7.94 87.66 0.70 9.34 16 3 O -0.60 -16.95 17.09 -3.04 -0.05 -17.00 16 4 N -0.72 -9.38 5.27 -463.05 -2.44 -11.82 16 5 C 0.13 2.05 5.07 86.38 0.44 2.49 16 6 C -0.10 -1.66 2.37 -10.72 -0.03 -1.68 16 7 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 8 C -0.10 -1.36 5.06 30.62 0.15 -1.20 16 9 C -0.13 -2.42 6.08 30.67 0.19 -2.24 16 10 C 0.11 2.83 6.38 86.36 0.55 3.38 16 11 N -1.00 -27.74 3.35 -513.06 -1.72 -29.46 16 12 S 2.79 107.93 6.10 -56.49 -0.34 107.58 16 13 O -1.01 -48.03 15.42 -128.00 -1.97 -50.00 16 14 O -1.01 -41.00 15.46 -128.00 -1.98 -42.98 16 15 N -1.00 -39.66 3.12 -520.46 -1.62 -41.28 16 16 C 0.09 3.15 9.65 127.77 1.23 4.39 16 17 C 0.28 13.14 2.62 44.25 0.12 13.26 16 18 H 0.02 1.22 6.91 -2.39 -0.02 1.20 16 19 C -0.13 -5.45 8.97 71.98 0.65 -4.80 16 20 C -0.54 -28.91 7.99 25.60 0.20 -28.71 16 21 H 0.05 2.86 7.33 -2.91 -0.02 2.84 16 22 C 0.02 1.14 5.30 84.65 0.45 1.59 16 23 N -0.91 -49.81 11.32 21.45 0.24 -49.57 16 24 Si 0.95 42.73 29.54 68.60 2.03 44.75 16 25 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 26 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 27 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 28 C 0.12 2.63 5.66 86.36 0.49 3.12 16 29 H 0.09 0.83 8.12 -2.39 -0.02 0.81 16 30 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.42 3.12 7.66 -92.71 -0.71 2.41 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 0.80 7.16 -2.39 -0.02 0.78 16 36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.06 1.36 6.27 -2.39 -0.01 1.34 16 39 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.06 1.99 7.12 -2.39 -0.02 1.97 16 41 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.07 2.52 7.02 -2.39 -0.02 2.51 16 43 H 0.07 2.16 7.02 -2.39 -0.02 2.14 16 44 H 0.04 1.47 6.27 -2.39 -0.01 1.46 16 45 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 46 H 0.04 1.52 7.67 -2.39 -0.02 1.50 16 47 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 48 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 49 H 0.08 1.91 7.13 -2.38 -0.02 1.89 16 Total: -1.00 -75.41 392.88 -1.75 -77.16 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.24 Total: 14.33 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 5.87 Total: -1.70 kcal Atomic # 7 Polarization: -126.59 SS G_CDS: -5.54 Total: -132.13 kcal Atomic # 8 Polarization: -105.98 SS G_CDS: -4.00 Total: -109.99 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: 107.93 SS G_CDS: -0.34 Total: 107.58 kcal Total: -75.41 -1.75 -77.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337956331.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.171 kcal (2) G-P(sol) polarization free energy of solvation -75.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds