Wall clock time and date at job start Wed Apr 1 2020 05:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.87183 * 2 1 4 4 C 1.54326 * 110.00894 * 121.09622 * 2 1 3 5 5 C 1.55160 * 102.94025 * 97.30041 * 4 2 1 6 6 H 1.09010 * 111.00240 * 277.42513 * 5 4 2 7 7 N 1.46894 * 111.00450 * 153.61482 * 5 4 2 8 8 C 1.47014 * 111.00077 * 185.64162 * 7 5 4 9 9 C 1.53101 * 109.25787 * 177.60395 * 8 7 5 10 10 O 1.43014 * 109.25971 * 56.85029 * 9 8 7 11 11 C 1.43014 * 113.73799 * 301.33262 * 10 9 8 12 12 C 1.47012 * 111.00189 * 62.00430 * 7 5 4 13 13 C 1.54692 * 101.67814 * 35.33095 * 5 4 2 14 14 N 1.47023 * 109.88214 * 238.98046 * 2 1 3 15 15 S 1.65598 * 125.64511 * 59.33499 * 14 2 1 16 16 O 1.42107 * 106.40413 * 336.45453 * 15 14 2 17 17 O 1.42105 * 106.40030 * 203.53651 * 15 14 2 18 18 N 1.65598 * 107.21962 * 89.99966 * 15 14 2 19 19 C 1.46500 * 120.00403 * 89.99911 * 18 15 14 20 20 C 1.46503 * 119.99678 * 269.99673 * 18 15 14 21 21 C 1.50700 * 109.47389 * 264.99722 * 20 18 15 22 22 H 1.08000 * 119.99690 * 0.02562 * 21 20 18 23 23 C 1.37875 * 120.00247 * 179.97438 * 21 20 18 24 24 N 1.31518 * 120.00088 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99946 * 0.02562 * 23 21 20 26 26 H 1.48491 * 109.47424 * 89.99537 * 25 23 21 27 27 H 1.48497 * 109.46868 * 209.99622 * 25 23 21 28 28 H 1.48497 * 109.46926 * 329.99390 * 25 23 21 29 29 H 1.09002 * 109.47135 * 179.56564 * 1 2 3 30 30 H 1.08996 * 109.47128 * 299.56087 * 1 2 3 31 31 H 1.08996 * 109.47105 * 59.56287 * 1 2 3 32 32 H 1.09000 * 110.72011 * 215.66019 * 4 2 1 33 33 H 1.08999 * 110.72180 * 338.75710 * 4 2 1 34 34 H 1.09000 * 109.50839 * 297.54279 * 8 7 5 35 35 H 1.09000 * 109.50384 * 57.67460 * 8 7 5 36 36 H 1.09000 * 109.50776 * 296.91202 * 9 8 7 37 37 H 1.09000 * 109.53804 * 176.80438 * 9 8 7 38 38 H 1.09000 * 109.50601 * 298.73215 * 11 10 9 39 39 H 1.09004 * 109.54385 * 178.62593 * 11 10 9 40 40 H 1.08996 * 109.51210 * 302.32945 * 12 7 5 41 41 H 1.09006 * 109.50544 * 62.46486 * 12 7 5 42 42 H 1.09002 * 110.39032 * 204.36430 * 13 5 4 43 43 H 1.08997 * 110.23287 * 82.11459 * 13 5 4 44 44 H 1.09002 * 109.46859 * 270.00312 * 19 18 15 45 45 H 1.08994 * 109.47253 * 149.99801 * 19 18 15 46 46 H 1.08998 * 109.46650 * 29.99426 * 19 18 15 47 47 H 1.09000 * 109.47203 * 24.99793 * 20 18 15 48 48 H 1.09005 * 109.47035 * 144.99869 * 20 18 15 49 49 H 0.96996 * 119.99613 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0581 -0.7489 1.2417 5 6 2.3575 -2.1680 0.6903 6 1 1.4520 -2.7742 0.6592 7 7 3.4040 -2.8300 1.4806 8 6 3.7823 -4.1176 0.8804 9 6 4.9139 -4.7436 1.6998 10 8 4.4908 -4.8833 3.0588 11 6 4.1154 -3.6484 3.6747 12 6 2.9757 -3.0112 2.8752 13 6 2.8554 -1.8498 -0.7393 14 7 2.0300 -0.7125 -1.1849 15 16 1.7128 -0.3085 -2.7592 16 8 0.5007 0.4333 -2.7467 17 8 1.8903 -1.4946 -3.5214 18 7 2.8984 0.7410 -3.2444 19 6 4.1281 0.2267 -3.8523 20 6 2.7174 2.1838 -3.0658 21 6 2.1687 2.7823 -4.3354 22 1 1.9739 2.1509 -5.1897 23 6 1.9145 4.1355 -4.4059 24 7 1.4352 4.6577 -5.5137 25 14 2.2509 5.2274 -2.9280 26 1 3.6437 5.7375 -2.9961 27 1 1.3040 6.3713 -2.9319 28 1 2.0722 4.4412 -1.6809 29 1 -0.3633 -1.0276 -0.0078 30 1 -0.3633 0.5070 0.8939 31 1 -0.3633 0.5206 -0.8860 32 1 2.9684 -0.2808 1.6163 33 1 1.2972 -0.7877 2.0212 34 1 2.9211 -4.7857 0.8792 35 1 4.1203 -3.9566 -0.1433 36 1 5.7932 -4.1009 1.6566 37 1 5.1596 -5.7243 1.2925 38 1 4.9714 -2.9738 3.6890 39 1 3.7830 -3.8364 4.6957 40 1 2.7249 -2.0427 3.3078 41 1 2.1016 -3.6617 2.9060 42 1 2.7038 -2.7080 -1.3941 43 1 3.9083 -1.5691 -0.7180 44 1 4.8671 0.0384 -3.0735 45 1 4.5203 0.9611 -4.5557 46 1 3.9115 -0.7023 -4.3798 47 1 2.0196 2.3640 -2.2480 48 1 3.6775 2.6442 -2.8324 49 1 1.2568 5.6098 -5.5634 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352595744.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:21 Heat of formation + Delta-G solvation = -96.644565 kcal Electronic energy + Delta-G solvation = -30839.390877 eV Core-core repulsion = 26735.964131 eV Total energy + Delta-G solvation = -4103.426746 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.24494 -38.60899 -36.77676 -35.64355 -35.50132 -35.23927 -32.39968 -31.78344 -30.98153 -30.30434 -28.40456 -26.71535 -25.84978 -25.13179 -24.07660 -21.98398 -21.71108 -21.10209 -20.40097 -18.50383 -17.60998 -17.02488 -16.98361 -16.48628 -16.40172 -15.95493 -15.48969 -15.30781 -15.23071 -14.79979 -14.42141 -14.02839 -13.85453 -13.63668 -13.57894 -13.27087 -13.07321 -12.87704 -12.55807 -12.44921 -12.37856 -12.17111 -12.04685 -11.82486 -11.75402 -11.61926 -11.49236 -11.31512 -11.29231 -11.05751 -10.91542 -10.79839 -10.67732 -10.58660 -10.41828 -10.21968 -10.00740 -9.57388 -8.97023 -8.77330 -8.61159 -8.14241 -6.09927 -4.09446 1.02611 3.18951 3.24319 3.31772 3.32447 3.46420 3.55359 3.98788 4.14844 4.36419 4.46705 4.54787 4.63607 4.77299 4.79690 4.83272 4.92798 4.96955 5.12116 5.13982 5.19638 5.23812 5.28493 5.36241 5.42934 5.46149 5.49534 5.53553 5.59864 5.63628 5.69186 5.75227 5.88572 5.91435 6.03358 6.17730 6.25086 6.39798 6.52122 6.55798 6.60243 6.65951 6.71097 6.77717 7.05704 7.36964 7.55860 8.47187 8.94702 9.48897 11.03668 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018131 B = 0.003113 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.976747 B = 8993.285343 C = 9343.552556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.152 3.848 3 H 0.077 0.923 4 C -0.114 4.114 5 C 0.073 3.927 6 H 0.059 0.941 7 N -0.526 5.526 8 C 0.012 3.988 9 C 0.064 3.936 10 O -0.388 6.388 11 C 0.064 3.936 12 C 0.018 3.982 13 C 0.128 3.872 14 N -1.018 6.018 15 S 2.794 3.206 16 O -0.952 6.952 17 O -0.990 6.990 18 N -0.990 5.990 19 C 0.094 3.906 20 C 0.228 3.772 21 C -0.532 4.532 22 H 0.077 0.923 23 C 0.073 3.927 24 N -0.895 5.895 25 Si 0.874 3.126 26 H -0.275 1.275 27 H -0.283 1.283 28 H -0.264 1.264 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.098 0.902 38 H 0.060 0.940 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.043 0.957 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.040 0.960 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.033 0.967 48 H 0.028 0.972 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.170 -15.875 18.914 25.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.045 3.955 3 H 0.095 0.905 4 C -0.153 4.153 5 C -0.037 4.037 6 H 0.077 0.923 7 N -0.252 5.252 8 C -0.116 4.116 9 C -0.013 4.013 10 O -0.306 6.306 11 C -0.013 4.013 12 C -0.111 4.111 13 C 0.002 3.998 14 N -0.857 5.857 15 S 2.804 3.196 16 O -0.936 6.936 17 O -0.974 6.974 18 N -0.832 5.832 19 C -0.052 4.052 20 C 0.105 3.895 21 C -0.571 4.571 22 H 0.095 0.905 23 C -0.130 4.130 24 N -0.533 5.533 25 Si 0.700 3.300 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.189 1.189 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.078 0.922 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.061 0.939 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.058 0.942 45 H 0.099 0.901 46 H 0.086 0.914 47 H 0.050 0.950 48 H 0.046 0.954 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.785 -15.850 18.287 24.882 hybrid contribution -0.277 0.669 0.657 0.978 sum 5.508 -15.181 18.945 24.894 Atomic orbital electron populations 1.22577 0.94618 1.02631 1.04736 1.21220 0.94415 0.95895 0.83973 0.90460 1.22749 1.01803 0.93957 0.96817 1.22774 0.92562 0.95236 0.93138 0.92280 1.62216 1.39479 1.21634 1.01850 1.22860 0.98818 0.90079 0.99807 1.22673 0.95765 1.01260 0.81552 1.87983 1.86001 1.30618 1.26007 1.22664 0.96537 0.85942 0.96148 1.22792 0.97483 1.01500 0.89282 1.21820 0.95254 0.88815 0.93916 1.59449 1.64266 1.38938 1.23038 1.01642 0.73806 0.72623 0.71526 1.93590 1.42376 1.72157 1.85471 1.93523 1.87105 1.48433 1.68351 1.57469 1.33152 1.18744 1.73797 1.21382 0.85990 1.00068 0.97780 1.19436 0.96751 0.75310 0.98030 1.21369 1.43265 0.93766 0.98696 0.90467 1.24873 0.94468 0.97818 0.95808 1.69897 1.44304 1.12717 1.26372 0.86894 0.78476 0.80834 0.83763 1.20038 1.20843 1.18917 0.92712 0.91675 0.88561 0.89606 0.90351 0.93694 0.89068 0.92081 0.88376 0.92153 0.88507 0.89245 0.93873 0.90469 0.90724 0.94190 0.90092 0.91381 0.94953 0.95405 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.50 8.99 37.16 0.33 -2.17 16 2 C 0.15 1.99 3.70 -66.95 -0.25 1.74 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.11 -1.10 4.91 -24.89 -0.12 -1.23 16 5 C 0.07 0.72 2.69 -65.68 -0.18 0.55 16 6 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 7 N -0.53 -4.64 4.63 -223.90 -1.04 -5.67 16 8 C 0.01 0.10 5.47 -3.71 -0.02 0.08 16 9 C 0.06 0.49 7.01 37.21 0.26 0.75 16 10 O -0.39 -3.57 10.83 -35.23 -0.38 -3.95 16 11 C 0.06 0.46 7.01 37.21 0.26 0.72 16 12 C 0.02 0.13 5.47 -3.71 -0.02 0.11 16 13 C 0.13 1.54 5.54 -2.65 -0.01 1.52 16 14 N -1.02 -15.20 3.47 -104.55 -0.36 -15.56 16 15 S 2.79 55.05 6.27 -107.50 -0.67 54.38 16 16 O -0.95 -21.91 14.12 -57.17 -0.81 -22.72 16 17 O -0.99 -20.61 16.06 -57.17 -0.92 -21.53 16 18 N -0.99 -20.20 3.23 -123.05 -0.40 -20.60 16 19 C 0.09 1.60 10.68 59.85 0.64 2.24 16 20 C 0.23 5.34 4.15 -5.19 -0.02 5.32 16 21 C -0.53 -15.13 9.94 -34.44 -0.34 -15.47 16 22 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 23 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 24 N -0.89 -27.46 13.96 55.43 0.77 -26.68 16 25 Si 0.87 20.91 27.47 -169.99 -4.67 16.24 16 26 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.26 -5.96 6.54 56.52 0.37 -5.59 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 1.63 5.67 -51.93 -0.29 1.33 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.63 7.73 -51.93 -0.40 0.23 16 34 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.70 7.05 -51.93 -0.37 0.34 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.58 7.09 -51.93 -0.37 0.21 16 41 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 0.93 7.61 -51.93 -0.39 0.54 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 46 H 0.07 1.11 7.02 -51.93 -0.36 0.75 16 47 H 0.03 0.76 6.67 -51.93 -0.35 0.42 16 48 H 0.03 0.61 7.54 -51.93 -0.39 0.22 16 49 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 388.44 15.07 5.85 5.85 Total: -1.00 -34.60 388.44 -10.62 -45.22 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -8.43 Total: -1.17 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 0.43 Total: -3.83 kcal Atomic # 7 Polarization: -67.49 SS G_CDS: -1.02 Total: -68.51 kcal Atomic # 8 Polarization: -46.09 SS G_CDS: -2.11 Total: -48.19 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Atomic # 16 Polarization: 55.05 SS G_CDS: -0.67 Total: 54.38 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.60 -10.62 -45.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352595744.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.424 kcal (2) G-P(sol) polarization free energy of solvation -34.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds