Wall clock time and date at job start Wed Apr 1 2020 05:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.87183 * 2 1 4 4 C 1.54326 * 110.00894 * 121.09622 * 2 1 3 5 5 C 1.55160 * 102.94025 * 97.30041 * 4 2 1 6 6 H 1.09010 * 111.00240 * 277.42513 * 5 4 2 7 7 N 1.46894 * 111.00450 * 153.61482 * 5 4 2 8 8 C 1.47014 * 111.00077 * 185.64162 * 7 5 4 9 9 C 1.53101 * 109.25787 * 177.60395 * 8 7 5 10 10 O 1.43014 * 109.25971 * 56.85029 * 9 8 7 11 11 C 1.43014 * 113.73799 * 301.33262 * 10 9 8 12 12 C 1.47012 * 111.00189 * 62.00430 * 7 5 4 13 13 C 1.54692 * 101.67814 * 35.33095 * 5 4 2 14 14 N 1.47023 * 109.88214 * 238.98046 * 2 1 3 15 15 S 1.65598 * 125.64511 * 59.33499 * 14 2 1 16 16 O 1.42107 * 106.40413 * 336.45453 * 15 14 2 17 17 O 1.42105 * 106.40030 * 203.53651 * 15 14 2 18 18 N 1.65598 * 107.21962 * 89.99966 * 15 14 2 19 19 C 1.46500 * 120.00403 * 89.99911 * 18 15 14 20 20 C 1.46503 * 119.99678 * 269.99673 * 18 15 14 21 21 C 1.50700 * 109.47389 * 264.99722 * 20 18 15 22 22 H 1.08000 * 119.99690 * 0.02562 * 21 20 18 23 23 C 1.37875 * 120.00247 * 179.97438 * 21 20 18 24 24 N 1.31518 * 120.00088 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99946 * 0.02562 * 23 21 20 26 26 H 1.48491 * 109.47424 * 89.99537 * 25 23 21 27 27 H 1.48497 * 109.46868 * 209.99622 * 25 23 21 28 28 H 1.48497 * 109.46926 * 329.99390 * 25 23 21 29 29 H 1.09002 * 109.47135 * 179.56564 * 1 2 3 30 30 H 1.08996 * 109.47128 * 299.56087 * 1 2 3 31 31 H 1.08996 * 109.47105 * 59.56287 * 1 2 3 32 32 H 1.09000 * 110.72011 * 215.66019 * 4 2 1 33 33 H 1.08999 * 110.72180 * 338.75710 * 4 2 1 34 34 H 1.09000 * 109.50839 * 297.54279 * 8 7 5 35 35 H 1.09000 * 109.50384 * 57.67460 * 8 7 5 36 36 H 1.09000 * 109.50776 * 296.91202 * 9 8 7 37 37 H 1.09000 * 109.53804 * 176.80438 * 9 8 7 38 38 H 1.09000 * 109.50601 * 298.73215 * 11 10 9 39 39 H 1.09004 * 109.54385 * 178.62593 * 11 10 9 40 40 H 1.08996 * 109.51210 * 302.32945 * 12 7 5 41 41 H 1.09006 * 109.50544 * 62.46486 * 12 7 5 42 42 H 1.09002 * 110.39032 * 204.36430 * 13 5 4 43 43 H 1.08997 * 110.23287 * 82.11459 * 13 5 4 44 44 H 1.09002 * 109.46859 * 270.00312 * 19 18 15 45 45 H 1.08994 * 109.47253 * 149.99801 * 19 18 15 46 46 H 1.08998 * 109.46650 * 29.99426 * 19 18 15 47 47 H 1.09000 * 109.47203 * 24.99793 * 20 18 15 48 48 H 1.09005 * 109.47035 * 144.99869 * 20 18 15 49 49 H 0.96996 * 119.99613 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0581 -0.7489 1.2417 5 6 2.3575 -2.1680 0.6903 6 1 1.4520 -2.7742 0.6592 7 7 3.4040 -2.8300 1.4806 8 6 3.7823 -4.1176 0.8804 9 6 4.9139 -4.7436 1.6998 10 8 4.4908 -4.8833 3.0588 11 6 4.1154 -3.6484 3.6747 12 6 2.9757 -3.0112 2.8752 13 6 2.8554 -1.8498 -0.7393 14 7 2.0300 -0.7125 -1.1849 15 16 1.7128 -0.3085 -2.7592 16 8 0.5007 0.4333 -2.7467 17 8 1.8903 -1.4946 -3.5214 18 7 2.8984 0.7410 -3.2444 19 6 4.1281 0.2267 -3.8523 20 6 2.7174 2.1838 -3.0658 21 6 2.1687 2.7823 -4.3354 22 1 1.9739 2.1509 -5.1897 23 6 1.9145 4.1355 -4.4059 24 7 1.4352 4.6577 -5.5137 25 14 2.2509 5.2274 -2.9280 26 1 3.6437 5.7375 -2.9961 27 1 1.3040 6.3713 -2.9319 28 1 2.0722 4.4412 -1.6809 29 1 -0.3633 -1.0276 -0.0078 30 1 -0.3633 0.5070 0.8939 31 1 -0.3633 0.5206 -0.8860 32 1 2.9684 -0.2808 1.6163 33 1 1.2972 -0.7877 2.0212 34 1 2.9211 -4.7857 0.8792 35 1 4.1203 -3.9566 -0.1433 36 1 5.7932 -4.1009 1.6566 37 1 5.1596 -5.7243 1.2925 38 1 4.9714 -2.9738 3.6890 39 1 3.7830 -3.8364 4.6957 40 1 2.7249 -2.0427 3.3078 41 1 2.1016 -3.6617 2.9060 42 1 2.7038 -2.7080 -1.3941 43 1 3.9083 -1.5691 -0.7180 44 1 4.8671 0.0384 -3.0735 45 1 4.5203 0.9611 -4.5557 46 1 3.9115 -0.7023 -4.3798 47 1 2.0196 2.3640 -2.2480 48 1 3.6775 2.6442 -2.8324 49 1 1.2568 5.6098 -5.5634 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352595744.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:20 Heat of formation + Delta-G solvation = -124.607625 kcal Electronic energy + Delta-G solvation = -30840.603447 eV Core-core repulsion = 26735.964131 eV Total energy + Delta-G solvation = -4104.639315 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.96180 -39.43480 -38.41048 -37.32460 -36.92111 -36.23126 -34.52350 -32.52059 -31.84442 -31.15495 -30.29734 -27.43480 -26.95798 -26.55110 -24.72606 -23.85907 -22.69560 -21.92815 -21.12297 -19.85780 -19.22227 -18.66452 -18.46545 -17.59496 -17.25471 -16.99043 -16.56054 -16.30282 -15.97309 -15.87393 -15.67002 -15.38801 -14.97687 -14.77634 -14.63815 -14.49069 -14.43447 -14.24410 -13.99296 -13.70239 -13.45117 -13.30518 -13.21155 -13.13703 -13.04109 -12.97295 -12.78947 -12.61195 -12.38605 -12.31019 -12.28599 -12.01935 -11.86854 -11.73815 -11.70581 -11.54384 -11.39526 -10.78930 -10.61715 -10.12055 -9.80444 -9.43795 -8.30051 -6.36585 -0.48999 1.36103 1.40710 1.50166 1.94844 2.35087 2.43800 2.72271 3.01160 3.03476 3.14164 3.47532 3.64702 3.97367 3.97707 4.03501 4.05591 4.17800 4.24113 4.29358 4.31590 4.36478 4.43610 4.50497 4.62606 4.63860 4.66727 4.75099 4.78100 4.79561 4.82521 4.86256 4.88931 4.94254 4.96852 5.01932 5.09034 5.11551 5.20825 5.32354 5.39959 5.47140 5.49920 5.77080 5.93142 5.95846 6.23002 6.28865 6.66122 7.26640 8.87697 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018131 B = 0.003113 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.976747 B = 8993.285343 C = 9343.552556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.142 3.858 3 H 0.075 0.925 4 C -0.100 4.100 5 C 0.081 3.919 6 H 0.056 0.944 7 N -0.527 5.527 8 C 0.011 3.989 9 C 0.065 3.935 10 O -0.408 6.408 11 C 0.062 3.938 12 C 0.018 3.982 13 C 0.122 3.878 14 N -1.012 6.012 15 S 2.805 3.195 16 O -0.994 6.994 17 O -1.009 7.009 18 N -1.001 6.001 19 C 0.088 3.912 20 C 0.237 3.763 21 C -0.545 4.545 22 H 0.025 0.975 23 C 0.006 3.994 24 N -0.949 5.949 25 Si 0.947 3.053 26 H -0.254 1.254 27 H -0.283 1.283 28 H -0.238 1.238 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.038 0.962 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.110 0.890 38 H 0.063 0.937 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.038 0.962 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.036 0.964 48 H 0.053 0.947 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.829 -16.095 22.861 29.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.036 3.964 3 H 0.093 0.907 4 C -0.139 4.139 5 C -0.029 4.029 6 H 0.074 0.926 7 N -0.253 5.253 8 C -0.117 4.117 9 C -0.012 4.012 10 O -0.327 6.327 11 C -0.015 4.015 12 C -0.110 4.110 13 C -0.003 4.003 14 N -0.854 5.854 15 S 2.815 3.185 16 O -0.977 6.977 17 O -0.993 6.993 18 N -0.842 5.842 19 C -0.058 4.058 20 C 0.113 3.887 21 C -0.584 4.584 22 H 0.043 0.957 23 C -0.191 4.191 24 N -0.589 5.589 25 Si 0.768 3.232 26 H -0.178 1.178 27 H -0.209 1.209 28 H -0.161 1.161 29 H 0.078 0.922 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.056 0.944 35 H 0.112 0.888 36 H 0.082 0.918 37 H 0.128 0.872 38 H 0.081 0.919 39 H 0.131 0.869 40 H 0.123 0.877 41 H 0.056 0.944 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.100 0.900 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.054 0.946 48 H 0.071 0.929 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.468 -16.108 22.224 28.445 hybrid contribution -0.813 0.607 -0.629 1.194 sum 6.654 -15.501 21.595 27.402 Atomic orbital electron populations 1.22561 0.95109 1.02794 1.04162 1.21501 0.94192 0.96273 0.84461 0.90708 1.22707 1.02881 0.92831 0.95433 1.22640 0.92661 0.95686 0.91949 0.92615 1.62233 1.38827 1.21841 1.02365 1.22897 0.98848 0.89824 1.00148 1.22744 0.95441 1.02015 0.80975 1.87961 1.86153 1.31867 1.26674 1.22805 0.96533 0.85353 0.96779 1.22862 0.97413 1.02273 0.88440 1.22056 0.95503 0.87550 0.95216 1.58992 1.64677 1.39881 1.21833 1.00995 0.73090 0.71972 0.72398 1.93548 1.44608 1.73058 1.86534 1.93485 1.87200 1.48855 1.69794 1.57454 1.34281 1.17595 1.74854 1.21591 0.85634 0.99558 0.98974 1.19198 0.97423 0.76890 0.95232 1.21686 1.43537 0.93798 0.99374 0.95690 1.25971 0.93984 0.99653 0.99521 1.70079 1.46121 1.13360 1.29354 0.85734 0.79221 0.78325 0.79894 1.17790 1.20903 1.16086 0.92158 0.88885 0.92494 0.88386 0.87954 0.94379 0.88813 0.91780 0.87193 0.91861 0.86898 0.87703 0.94365 0.90950 0.89442 0.90040 0.91120 0.91330 0.94586 0.92913 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.75 8.99 71.98 0.65 -4.11 16 2 C 0.14 3.38 3.70 45.34 0.17 3.55 16 3 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 4 C -0.10 -1.54 4.91 31.78 0.16 -1.39 16 5 C 0.08 1.38 2.69 46.23 0.12 1.50 16 6 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 7 N -0.53 -7.68 4.63 -862.28 -3.99 -11.68 16 8 C 0.01 0.16 5.47 86.32 0.47 0.63 16 9 C 0.06 0.84 7.01 72.02 0.50 1.35 16 10 O -0.41 -6.58 10.83 -148.98 -1.61 -8.20 16 11 C 0.06 0.71 7.01 72.02 0.50 1.21 16 12 C 0.02 0.21 5.47 86.32 0.47 0.68 16 13 C 0.12 2.67 5.54 86.78 0.48 3.15 16 14 N -1.01 -28.80 3.47 -484.69 -1.68 -30.48 16 15 S 2.80 111.51 6.27 -56.49 -0.35 111.16 16 16 O -0.99 -47.29 14.12 -128.00 -1.81 -49.10 16 17 O -1.01 -42.69 16.06 -128.00 -2.06 -44.74 16 18 N -1.00 -40.62 3.23 -543.22 -1.75 -42.37 16 19 C 0.09 2.90 10.68 127.77 1.36 4.27 16 20 C 0.24 10.95 4.15 85.63 0.36 11.31 16 21 C -0.54 -31.96 9.94 25.60 0.25 -31.71 16 22 H 0.02 1.66 8.06 -2.91 -0.02 1.64 16 23 C 0.01 0.38 5.47 84.65 0.46 0.84 16 24 N -0.95 -60.35 13.96 21.45 0.30 -60.05 16 25 Si 0.95 42.46 27.47 68.60 1.88 44.34 16 26 H -0.25 -10.49 7.11 99.48 0.71 -9.78 16 27 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 28 H -0.24 -9.56 6.54 99.48 0.65 -8.91 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.06 1.94 5.67 -2.39 -0.01 1.92 16 32 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.10 1.16 7.73 -2.39 -0.02 1.14 16 34 H 0.04 0.59 8.14 -2.39 -0.02 0.58 16 35 H 0.09 1.26 7.05 -2.39 -0.02 1.24 16 36 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.11 0.89 8.14 -2.38 -0.02 0.88 16 40 H 0.10 0.91 7.09 -2.39 -0.02 0.89 16 41 H 0.04 0.50 8.14 -2.38 -0.02 0.48 16 42 H 0.07 1.65 7.61 -2.39 -0.02 1.63 16 43 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.07 2.46 8.07 -2.39 -0.02 2.44 16 46 H 0.07 2.24 7.02 -2.39 -0.02 2.22 16 47 H 0.04 1.65 6.67 -2.39 -0.02 1.63 16 48 H 0.05 2.19 7.54 -2.38 -0.02 2.17 16 49 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -78.87 388.44 -4.24 -83.12 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.86 Total: 16.72 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: 5.97 Total: -8.72 kcal Atomic # 7 Polarization: -137.45 SS G_CDS: -7.13 Total: -144.58 kcal Atomic # 8 Polarization: -96.57 SS G_CDS: -5.48 Total: -102.04 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.88 Total: 44.34 kcal Atomic # 16 Polarization: 111.51 SS G_CDS: -0.35 Total: 111.16 kcal Total: -78.87 -4.24 -83.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352595744.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.491 kcal (2) G-P(sol) polarization free energy of solvation -78.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds