Wall clock time and date at job start Wed Apr 1 2020 05:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47126 * 2 1 4 4 C 1.50699 * 109.47030 * 120.00417 * 2 1 3 5 5 O 1.21279 * 120.00406 * 119.99668 * 4 2 1 6 6 N 1.34780 * 119.99563 * 299.99249 * 4 2 1 7 7 C 1.46499 * 120.00229 * 0.02562 * 6 4 2 8 8 C 1.46499 * 119.99546 * 180.02562 * 6 4 2 9 9 C 1.50703 * 109.47349 * 270.00192 * 8 6 4 10 10 H 1.08007 * 119.99972 * 0.02562 * 9 8 6 11 11 C 1.37872 * 120.00296 * 180.02562 * 9 8 6 12 12 N 1.31512 * 120.00149 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00169 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47250 * 89.99298 * 13 11 9 15 15 H 1.48490 * 109.47435 * 209.99746 * 13 11 9 16 16 H 1.48498 * 109.47118 * 330.00059 * 13 11 9 17 17 N 1.46903 * 109.46842 * 240.00142 * 2 1 3 18 18 C 1.46849 * 110.99899 * 306.04531 * 17 2 1 19 19 C 1.53038 * 109.52113 * 185.84037 * 18 17 2 20 20 C 1.53116 * 109.27967 * 300.82369 * 19 18 17 21 21 C 1.53121 * 109.16169 * 57.65464 * 20 19 18 22 22 H 1.08996 * 109.50001 * 62.32842 * 21 20 19 23 23 C 1.53000 * 109.50080 * 182.40291 * 21 20 19 24 24 S 1.81393 * 109.47350 * 294.99914 * 23 21 20 25 25 N 1.65606 * 104.44933 * 180.02562 * 24 23 21 26 26 O 1.42096 * 110.54655 * 291.62595 * 24 23 21 27 27 O 1.42108 * 110.54076 * 68.37870 * 24 23 21 28 28 C 1.46847 * 111.00322 * 70.25879 * 17 2 1 29 29 H 1.09000 * 109.46647 * 300.00171 * 1 2 3 30 30 H 1.09000 * 109.46709 * 59.99685 * 1 2 3 31 31 H 1.08990 * 109.47561 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47391 * 89.99442 * 7 6 4 33 33 H 1.09001 * 109.46813 * 329.99499 * 7 6 4 34 34 H 1.09004 * 109.47041 * 209.99626 * 7 6 4 35 35 H 1.08993 * 109.47560 * 30.00104 * 8 6 4 36 36 H 1.09000 * 109.47209 * 150.00790 * 8 6 4 37 37 H 0.96993 * 120.00222 * 180.02562 * 12 11 9 38 38 H 1.08997 * 109.46478 * 305.85667 * 18 17 2 39 39 H 1.08998 * 109.45983 * 65.82785 * 18 17 2 40 40 H 1.09004 * 109.50314 * 60.76231 * 19 18 17 41 41 H 1.09004 * 109.50082 * 180.84200 * 19 18 17 42 42 H 1.08998 * 109.52591 * 177.56166 * 20 19 18 43 43 H 1.09002 * 109.52492 * 297.74589 * 20 19 18 44 44 H 1.09006 * 109.46916 * 55.00182 * 23 21 20 45 45 H 1.09006 * 109.46912 * 174.99632 * 23 21 20 46 46 H 0.97002 * 119.99792 * 0.02562 * 25 24 23 47 47 H 0.96996 * 119.99982 * 180.02562 * 25 24 23 48 48 H 1.08998 * 109.46242 * 294.17805 * 28 17 2 49 49 H 1.08998 * 109.45906 * 54.14118 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1192 6 7 1.7068 -0.2499 2.4545 7 6 0.8642 0.9409 2.5890 8 6 2.1955 -0.9403 3.6506 9 6 1.2033 -1.9977 4.0611 10 1 0.2992 -2.1415 3.4880 11 6 1.4496 -2.7817 5.1682 12 7 2.5507 -2.6071 5.8658 13 14 0.2201 -4.0929 5.6765 14 1 0.5552 -5.3734 5.0033 15 1 0.2747 -4.2786 7.1488 16 1 -1.1472 -3.6691 5.2814 17 7 2.0196 -0.6925 -1.1995 18 6 1.4344 -2.0350 -1.3078 19 6 2.0743 -2.7785 -2.4825 20 6 1.8317 -1.9900 -3.7724 21 6 2.4080 -0.5801 -3.6155 22 1 3.4854 -0.6423 -3.4629 23 6 2.1171 0.2340 -4.8778 24 16 3.0037 -0.4926 -6.2836 25 7 2.6056 0.4745 -7.5677 26 8 4.4057 -0.3161 -6.1341 27 8 2.4563 -1.7610 -6.6167 28 6 1.7585 0.0997 -2.4081 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0275 -0.0005 32 1 -0.1837 0.6428 2.6224 33 1 1.0275 1.5996 1.7360 34 1 1.1220 1.4665 3.5085 35 1 3.1558 -1.4080 3.4334 36 1 2.3165 -0.2215 4.4611 37 1 2.7242 -3.1588 6.6444 38 1 1.6176 -2.5865 -0.3857 39 1 0.3603 -1.9507 -1.4731 40 1 3.1464 -2.8753 -2.3113 41 1 1.6291 -3.7695 -2.5718 42 1 2.3227 -2.4936 -4.6050 43 1 0.7606 -1.9265 -3.9646 44 1 1.0457 0.2225 -5.0787 45 1 2.4483 1.2622 -4.7314 46 1 2.0133 1.2319 -7.4392 47 1 2.9648 0.2837 -8.4483 48 1 0.6829 0.1741 -2.5682 49 1 2.1770 1.0986 -2.2849 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358181696.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:17 Heat of formation + Delta-G solvation = -96.321230 kcal Electronic energy + Delta-G solvation = -30003.287349 eV Core-core repulsion = 25899.874624 eV Total energy + Delta-G solvation = -4103.412725 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.16758 -38.40414 -37.31018 -36.24051 -35.10526 -34.80758 -33.62049 -32.72869 -32.20124 -30.03324 -27.63067 -27.27252 -26.21536 -24.92125 -23.41012 -22.60998 -21.58592 -19.79516 -19.69328 -18.39085 -17.96082 -17.68115 -16.57287 -16.44465 -16.32798 -15.93113 -15.71125 -15.10506 -14.86072 -14.61129 -14.57418 -14.31597 -14.07966 -13.79173 -13.39566 -13.12545 -12.83082 -12.60199 -12.46368 -12.39424 -12.34334 -12.24559 -12.18386 -12.05420 -11.97609 -11.61446 -11.40779 -11.20197 -11.14482 -11.00977 -10.86861 -10.84022 -10.71967 -10.56528 -10.49462 -10.26128 -10.12451 -9.61830 -8.78702 -8.43203 -8.11294 -7.61406 -6.04000 -4.08684 -0.13703 2.49083 3.24329 3.30609 3.36267 3.37409 3.45839 3.60210 3.87117 4.07550 4.28387 4.40955 4.44775 4.57520 4.83783 4.95256 4.96888 5.08392 5.18692 5.20633 5.24713 5.29061 5.30695 5.45563 5.50762 5.52593 5.60008 5.66084 5.70642 5.76553 5.86022 5.91042 5.91750 6.00422 6.09540 6.23171 6.37064 6.43839 6.57406 6.96718 7.15481 7.20991 7.46104 7.56033 7.92428 8.23813 8.43544 8.91092 9.14024 9.56397 11.04038 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023176 B = 0.002319 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.849553 B =12069.226883 C =12503.021135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.065 3.935 3 H 0.099 0.901 4 C 0.511 3.489 5 O -0.521 6.521 6 N -0.603 5.603 7 C 0.085 3.915 8 C 0.247 3.753 9 C -0.524 4.524 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.894 5.894 13 Si 0.897 3.103 14 H -0.279 1.279 15 H -0.286 1.286 16 H -0.275 1.275 17 N -0.513 5.513 18 C 0.045 3.955 19 C -0.113 4.113 20 C -0.145 4.145 21 C -0.073 4.073 22 H 0.098 0.902 23 C -0.614 4.614 24 S 2.611 3.389 25 N -1.255 6.255 26 O -0.961 6.961 27 O -0.958 6.958 28 C 0.070 3.930 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.044 0.956 36 H 0.031 0.969 37 H 0.263 0.737 38 H 0.104 0.896 39 H 0.031 0.969 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.135 0.865 45 H 0.137 0.863 46 H 0.411 0.589 47 H 0.419 0.581 48 H 0.039 0.961 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.389 11.996 -24.301 27.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.047 4.047 3 H 0.117 0.883 4 C 0.297 3.703 5 O -0.397 6.397 6 N -0.337 5.337 7 C -0.060 4.060 8 C 0.127 3.873 9 C -0.563 4.563 10 H 0.074 0.926 11 C -0.141 4.141 12 N -0.533 5.533 13 Si 0.725 3.275 14 H -0.205 1.205 15 H -0.212 1.212 16 H -0.200 1.200 17 N -0.237 5.237 18 C -0.082 4.082 19 C -0.151 4.151 20 C -0.182 4.182 21 C -0.093 4.093 22 H 0.116 0.884 23 C -0.745 4.745 24 S 2.704 3.296 25 N -0.927 5.927 26 O -0.950 6.950 27 O -0.947 6.947 28 C -0.060 4.060 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.049 0.951 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.154 0.846 45 H 0.156 0.844 46 H 0.237 0.763 47 H 0.248 0.752 48 H 0.057 0.943 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.750 10.435 -24.006 26.444 hybrid contribution -2.249 0.347 0.238 2.289 sum -6.000 10.782 -23.768 26.780 Atomic orbital electron populations 1.22648 0.95864 1.03580 1.03230 1.21633 0.93988 0.98556 0.90481 0.88269 1.20016 0.81361 0.85092 0.83867 1.90642 1.37539 1.25705 1.85779 1.48118 1.50064 1.28164 1.07307 1.21757 0.95028 0.87736 1.01440 1.19289 0.96047 0.91863 0.80051 1.21402 1.05894 1.17917 1.11092 0.92622 1.24933 0.95594 0.97295 0.96311 1.69926 1.24863 1.40150 1.18408 0.86516 0.81297 0.82156 0.77535 1.20541 1.21156 1.20027 1.61726 1.59048 1.02587 1.00300 1.22355 0.95286 0.89511 1.01027 1.21528 1.02674 0.98127 0.92732 1.22109 1.01881 0.94359 0.99868 1.20919 1.02851 0.94377 0.91140 0.88380 1.30433 1.15196 1.12707 1.16159 1.04848 0.75210 0.74368 0.75210 1.53193 1.66151 1.47175 1.26223 1.93630 1.29961 1.85754 1.85660 1.93617 1.79982 1.39429 1.81720 1.22019 0.98176 0.96748 0.89028 0.90037 0.92333 0.91571 0.93043 0.92626 0.91494 0.93805 0.95077 0.92720 0.87838 0.95125 0.90495 0.90995 0.90160 0.91211 0.84620 0.84428 0.76308 0.75152 0.94321 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.40 8.08 37.16 0.30 -2.10 16 2 C 0.07 0.96 1.92 -68.86 -0.13 0.82 16 3 H 0.10 1.24 7.24 -51.93 -0.38 0.87 16 4 C 0.51 10.39 6.75 -10.98 -0.07 10.32 16 5 O -0.52 -12.89 13.93 5.56 0.08 -12.81 16 6 N -0.60 -12.50 2.86 -182.95 -0.52 -13.02 16 7 C 0.08 1.28 8.85 59.85 0.53 1.81 16 8 C 0.25 6.40 5.20 -5.19 -0.03 6.38 16 9 C -0.52 -14.74 9.39 -34.44 -0.32 -15.07 16 10 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 13 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 N -0.51 -7.31 4.34 -228.08 -0.99 -8.30 16 18 C 0.05 0.67 4.35 -3.83 -0.02 0.66 16 19 C -0.11 -1.46 6.09 -26.65 -0.16 -1.63 16 20 C -0.14 -1.54 4.89 -26.61 -0.13 -1.67 16 21 C -0.07 -0.69 2.35 -90.54 -0.21 -0.90 16 22 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 23 C -0.61 -3.33 5.54 37.16 0.21 -3.12 16 24 S 2.61 19.94 5.62 -107.50 -0.60 19.33 16 25 N -1.25 -4.84 9.43 60.35 0.57 -4.28 16 26 O -0.96 -11.47 18.10 -57.54 -1.04 -12.51 16 27 O -0.96 -10.65 15.91 -57.54 -0.92 -11.57 16 28 C 0.07 0.71 4.42 -3.84 -0.02 0.69 16 29 H 0.08 0.97 4.53 -51.93 -0.24 0.73 16 30 H 0.06 0.57 6.82 -51.93 -0.35 0.22 16 31 H 0.07 0.93 6.46 -51.93 -0.34 0.59 16 32 H 0.05 0.75 6.95 -51.93 -0.36 0.39 16 33 H 0.06 0.64 6.01 -51.93 -0.31 0.33 16 34 H 0.07 0.98 7.89 -51.93 -0.41 0.57 16 35 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 36 H 0.03 0.82 7.89 -51.93 -0.41 0.41 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.10 1.95 5.80 -51.93 -0.30 1.65 16 39 H 0.03 0.41 6.57 -51.93 -0.34 0.07 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.08 0.88 5.78 -51.93 -0.30 0.58 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.14 0.41 8.14 -51.92 -0.42 -0.01 16 45 H 0.14 0.39 8.14 -51.92 -0.42 -0.03 16 46 H 0.41 0.28 8.83 -34.47 -0.30 -0.03 16 47 H 0.42 1.36 8.96 -34.47 -0.31 1.06 16 48 H 0.04 0.35 6.88 -51.93 -0.36 -0.01 16 49 H 0.08 0.67 8.01 -51.93 -0.42 0.25 16 LS Contribution 384.66 15.07 5.80 5.80 Total: -1.00 -39.19 384.66 -9.66 -48.85 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -7.59 Total: -0.28 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -0.16 Total: -2.18 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -0.21 Total: -51.45 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -1.88 Total: -36.89 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 19.94 SS G_CDS: -0.60 Total: 19.33 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -39.19 -9.66 -48.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358181696.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.471 kcal (2) G-P(sol) polarization free energy of solvation -39.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds