Wall clock time and date at job start Wed Apr 1 2020 05:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47126 * 2 1 4 4 C 1.50699 * 109.47030 * 120.00417 * 2 1 3 5 5 O 1.21279 * 120.00406 * 119.99668 * 4 2 1 6 6 N 1.34780 * 119.99563 * 299.99249 * 4 2 1 7 7 C 1.46499 * 120.00229 * 0.02562 * 6 4 2 8 8 C 1.46499 * 119.99546 * 180.02562 * 6 4 2 9 9 C 1.50703 * 109.47349 * 270.00192 * 8 6 4 10 10 H 1.08007 * 119.99972 * 0.02562 * 9 8 6 11 11 C 1.37872 * 120.00296 * 180.02562 * 9 8 6 12 12 N 1.31512 * 120.00149 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00169 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47250 * 89.99298 * 13 11 9 15 15 H 1.48490 * 109.47435 * 209.99746 * 13 11 9 16 16 H 1.48498 * 109.47118 * 330.00059 * 13 11 9 17 17 N 1.46903 * 109.46842 * 240.00142 * 2 1 3 18 18 C 1.46849 * 110.99899 * 306.04531 * 17 2 1 19 19 C 1.53038 * 109.52113 * 185.84037 * 18 17 2 20 20 C 1.53116 * 109.27967 * 300.82369 * 19 18 17 21 21 C 1.53121 * 109.16169 * 57.65464 * 20 19 18 22 22 H 1.08996 * 109.50001 * 62.32842 * 21 20 19 23 23 C 1.53000 * 109.50080 * 182.40291 * 21 20 19 24 24 S 1.81393 * 109.47350 * 294.99914 * 23 21 20 25 25 N 1.65606 * 104.44933 * 180.02562 * 24 23 21 26 26 O 1.42096 * 110.54655 * 291.62595 * 24 23 21 27 27 O 1.42108 * 110.54076 * 68.37870 * 24 23 21 28 28 C 1.46847 * 111.00322 * 70.25879 * 17 2 1 29 29 H 1.09000 * 109.46647 * 300.00171 * 1 2 3 30 30 H 1.09000 * 109.46709 * 59.99685 * 1 2 3 31 31 H 1.08990 * 109.47561 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47391 * 89.99442 * 7 6 4 33 33 H 1.09001 * 109.46813 * 329.99499 * 7 6 4 34 34 H 1.09004 * 109.47041 * 209.99626 * 7 6 4 35 35 H 1.08993 * 109.47560 * 30.00104 * 8 6 4 36 36 H 1.09000 * 109.47209 * 150.00790 * 8 6 4 37 37 H 0.96993 * 120.00222 * 180.02562 * 12 11 9 38 38 H 1.08997 * 109.46478 * 305.85667 * 18 17 2 39 39 H 1.08998 * 109.45983 * 65.82785 * 18 17 2 40 40 H 1.09004 * 109.50314 * 60.76231 * 19 18 17 41 41 H 1.09004 * 109.50082 * 180.84200 * 19 18 17 42 42 H 1.08998 * 109.52591 * 177.56166 * 20 19 18 43 43 H 1.09002 * 109.52492 * 297.74589 * 20 19 18 44 44 H 1.09006 * 109.46916 * 55.00182 * 23 21 20 45 45 H 1.09006 * 109.46912 * 174.99632 * 23 21 20 46 46 H 0.97002 * 119.99792 * 0.02562 * 25 24 23 47 47 H 0.96996 * 119.99982 * 180.02562 * 25 24 23 48 48 H 1.08998 * 109.46242 * 294.17805 * 28 17 2 49 49 H 1.08998 * 109.45906 * 54.14118 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1192 6 7 1.7068 -0.2499 2.4545 7 6 0.8642 0.9409 2.5890 8 6 2.1955 -0.9403 3.6506 9 6 1.2033 -1.9977 4.0611 10 1 0.2992 -2.1415 3.4880 11 6 1.4496 -2.7817 5.1682 12 7 2.5507 -2.6071 5.8658 13 14 0.2201 -4.0929 5.6765 14 1 0.5552 -5.3734 5.0033 15 1 0.2747 -4.2786 7.1488 16 1 -1.1472 -3.6691 5.2814 17 7 2.0196 -0.6925 -1.1995 18 6 1.4344 -2.0350 -1.3078 19 6 2.0743 -2.7785 -2.4825 20 6 1.8317 -1.9900 -3.7724 21 6 2.4080 -0.5801 -3.6155 22 1 3.4854 -0.6423 -3.4629 23 6 2.1171 0.2340 -4.8778 24 16 3.0037 -0.4926 -6.2836 25 7 2.6056 0.4745 -7.5677 26 8 4.4057 -0.3161 -6.1341 27 8 2.4563 -1.7610 -6.6167 28 6 1.7585 0.0997 -2.4081 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0275 -0.0005 32 1 -0.1837 0.6428 2.6224 33 1 1.0275 1.5996 1.7360 34 1 1.1220 1.4665 3.5085 35 1 3.1558 -1.4080 3.4334 36 1 2.3165 -0.2215 4.4611 37 1 2.7242 -3.1588 6.6444 38 1 1.6176 -2.5865 -0.3857 39 1 0.3603 -1.9507 -1.4731 40 1 3.1464 -2.8753 -2.3113 41 1 1.6291 -3.7695 -2.5718 42 1 2.3227 -2.4936 -4.6050 43 1 0.7606 -1.9265 -3.9646 44 1 1.0457 0.2225 -5.0787 45 1 2.4483 1.2622 -4.7314 46 1 2.0133 1.2319 -7.4392 47 1 2.9648 0.2837 -8.4483 48 1 0.6829 0.1741 -2.5682 49 1 2.1770 1.0986 -2.2849 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358181696.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:16 Heat of formation + Delta-G solvation = -130.572185 kcal Electronic energy + Delta-G solvation = -30004.772582 eV Core-core repulsion = 25899.874624 eV Total energy + Delta-G solvation = -4104.897958 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.40046 -39.65345 -38.02140 -36.95514 -36.59359 -36.05935 -34.71826 -33.99588 -33.20249 -31.24105 -29.34499 -28.05562 -27.60305 -26.13819 -25.08137 -23.58181 -22.85156 -20.62868 -20.35570 -19.82195 -18.68168 -18.50324 -18.22317 -17.81133 -17.24596 -16.93810 -16.66353 -16.35318 -16.16678 -15.93070 -15.66206 -15.51635 -15.18852 -14.79221 -14.49358 -14.25500 -14.10906 -13.97703 -13.50206 -13.45316 -13.24947 -13.20670 -13.13605 -13.07554 -13.00034 -12.95600 -12.90098 -12.69116 -12.55864 -12.30570 -12.14300 -12.02754 -11.86680 -11.67305 -11.66561 -11.41514 -11.23852 -11.12124 -10.65340 -10.31836 -9.38033 -9.12933 -8.22223 -6.36965 -0.68642 1.34594 1.38024 1.47196 1.91153 2.01909 2.27146 2.40576 2.73113 2.99518 3.06953 3.41863 3.51676 3.67342 3.72557 3.82990 4.08818 4.12930 4.15715 4.26745 4.32325 4.38018 4.42016 4.54093 4.64379 4.69683 4.71943 4.75588 4.79278 4.83458 4.94999 4.98297 5.01052 5.04777 5.10316 5.22072 5.23918 5.29303 5.32679 5.40611 5.57781 5.86474 6.03547 6.07366 6.24134 6.42178 6.71433 6.86231 7.29559 7.58202 8.84546 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023176 B = 0.002319 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.849553 B =12069.226883 C =12503.021135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.079 3.921 3 H 0.133 0.867 4 C 0.498 3.502 5 O -0.580 6.580 6 N -0.612 5.612 7 C 0.078 3.922 8 C 0.261 3.739 9 C -0.537 4.537 10 H 0.052 0.948 11 C 0.005 3.995 12 N -0.929 5.929 13 Si 0.966 3.034 14 H -0.283 1.283 15 H -0.274 1.274 16 H -0.261 1.261 17 N -0.538 5.538 18 C 0.053 3.947 19 C -0.114 4.114 20 C -0.143 4.143 21 C -0.080 4.080 22 H 0.078 0.922 23 C -0.591 4.591 24 S 2.614 3.386 25 N -1.239 6.239 26 O -1.014 7.014 27 O -1.001 7.001 28 C 0.068 3.932 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.101 0.899 34 H 0.068 0.932 35 H -0.007 1.007 36 H 0.023 0.977 37 H 0.266 0.734 38 H 0.050 0.950 39 H 0.048 0.952 40 H 0.050 0.950 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.174 0.826 45 H 0.175 0.825 46 H 0.429 0.571 47 H 0.423 0.577 48 H 0.066 0.934 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.675 14.958 -26.230 31.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.033 4.033 3 H 0.150 0.850 4 C 0.286 3.714 5 O -0.460 6.460 6 N -0.344 5.344 7 C -0.063 4.063 8 C 0.139 3.861 9 C -0.576 4.576 10 H 0.070 0.930 11 C -0.193 4.193 12 N -0.569 5.569 13 Si 0.790 3.210 14 H -0.209 1.209 15 H -0.199 1.199 16 H -0.185 1.185 17 N -0.262 5.262 18 C -0.074 4.074 19 C -0.152 4.152 20 C -0.180 4.180 21 C -0.100 4.100 22 H 0.096 0.904 23 C -0.724 4.724 24 S 2.709 3.291 25 N -0.916 5.916 26 O -1.003 7.003 27 O -0.990 6.990 28 C -0.060 4.060 29 H 0.107 0.893 30 H 0.118 0.882 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.120 0.880 34 H 0.086 0.914 35 H 0.011 0.989 36 H 0.041 0.959 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.110 0.890 44 H 0.192 0.808 45 H 0.193 0.807 46 H 0.258 0.742 47 H 0.254 0.746 48 H 0.084 0.916 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.060 13.449 -25.986 30.099 hybrid contribution -1.187 -0.544 0.842 1.554 sum -8.247 12.905 -25.143 29.441 Atomic orbital electron populations 1.22618 0.93529 1.02834 1.05593 1.21578 0.95525 0.98715 0.87484 0.84979 1.21276 0.80189 0.84625 0.85325 1.90618 1.40101 1.28518 1.86764 1.48136 1.50717 1.29477 1.06045 1.22085 0.94443 0.86119 1.03702 1.18724 0.93722 0.91595 0.82048 1.21670 1.06014 1.18725 1.11150 0.92994 1.25864 0.97536 0.99559 0.96368 1.70050 1.26659 1.41290 1.18922 0.85444 0.79315 0.78688 0.77537 1.20873 1.19937 1.18465 1.61612 1.59972 1.02731 1.01928 1.22117 0.96352 0.90020 0.98941 1.21508 1.00900 0.98857 0.93968 1.22105 1.03275 0.94963 0.97666 1.20908 1.01750 0.94219 0.93135 0.90387 1.30214 1.17045 1.13378 1.11716 1.04365 0.74330 0.74140 0.76222 1.52760 1.66274 1.47265 1.25342 1.93575 1.33603 1.86427 1.86714 1.93571 1.80228 1.42351 1.82836 1.22205 1.00061 0.96973 0.86780 0.89306 0.88238 0.93891 0.92014 0.88020 0.91364 0.98855 0.95898 0.92465 0.93107 0.93429 0.93094 0.90847 0.90842 0.89036 0.80778 0.80675 0.74153 0.74634 0.91565 0.87960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.88 8.08 71.98 0.58 -3.30 16 2 C 0.08 2.10 1.92 44.17 0.09 2.18 16 3 H 0.13 2.67 7.24 -2.39 -0.02 2.65 16 4 C 0.50 20.61 6.75 87.66 0.59 21.20 16 5 O -0.58 -30.72 13.93 -3.02 -0.04 -30.76 16 6 N -0.61 -25.64 2.86 -851.13 -2.43 -28.07 16 7 C 0.08 2.20 8.85 127.77 1.13 3.33 16 8 C 0.26 14.23 5.20 85.63 0.45 14.68 16 9 C -0.54 -31.20 9.39 25.60 0.24 -30.96 16 10 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 11 C 0.01 0.32 5.46 84.65 0.46 0.78 16 12 N -0.93 -57.08 13.29 21.45 0.28 -56.79 16 13 Si 0.97 45.44 29.54 68.60 2.03 47.46 16 14 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 15 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 16 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 17 N -0.54 -14.45 4.34 -875.52 -3.80 -18.25 16 18 C 0.05 1.60 4.35 86.33 0.38 1.98 16 19 C -0.11 -3.08 6.09 30.65 0.19 -2.89 16 20 C -0.14 -2.83 4.89 30.67 0.15 -2.68 16 21 C -0.08 -1.28 2.35 -10.74 -0.03 -1.31 16 22 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 23 C -0.59 -3.62 5.54 71.98 0.40 -3.22 16 24 S 2.61 35.47 5.62 -56.49 -0.32 35.16 16 25 N -1.24 -6.22 9.43 37.02 0.35 -5.87 16 26 O -1.01 -24.05 18.10 -127.65 -2.31 -26.36 16 27 O -1.00 -21.52 15.91 -127.65 -2.03 -23.55 16 28 C 0.07 1.07 4.42 86.32 0.38 1.45 16 29 H 0.09 1.72 4.53 -2.39 -0.01 1.71 16 30 H 0.10 1.29 6.82 -2.39 -0.02 1.27 16 31 H 0.04 1.10 6.46 -2.39 -0.02 1.09 16 32 H 0.06 1.63 6.95 -2.39 -0.02 1.61 16 33 H 0.10 1.91 6.01 -2.39 -0.01 1.89 16 34 H 0.07 1.89 7.89 -2.38 -0.02 1.88 16 35 H -0.01 -0.43 7.42 -2.39 -0.02 -0.44 16 36 H 0.02 1.27 7.89 -2.39 -0.02 1.25 16 37 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 38 H 0.05 2.07 5.80 -2.39 -0.01 2.05 16 39 H 0.05 1.22 6.57 -2.39 -0.02 1.21 16 40 H 0.05 1.58 8.14 -2.38 -0.02 1.57 16 41 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 42 H 0.07 1.58 5.78 -2.39 -0.01 1.57 16 43 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.17 -0.14 8.14 -2.39 -0.02 -0.16 16 45 H 0.18 -0.11 8.14 -2.39 -0.02 -0.13 16 46 H 0.43 -1.15 8.83 -96.74 -0.85 -2.00 16 47 H 0.42 1.93 8.96 -96.75 -0.87 1.07 16 48 H 0.07 0.73 6.88 -2.39 -0.02 0.71 16 49 H 0.10 1.14 8.01 -2.39 -0.02 1.12 16 Total: -1.00 -94.68 384.66 -4.00 -98.69 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -0.74 Total: 7.10 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 5.00 Total: 1.25 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -5.60 Total: -108.98 kcal Atomic # 8 Polarization: -76.30 SS G_CDS: -4.38 Total: -80.68 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 16 Polarization: 35.47 SS G_CDS: -0.32 Total: 35.16 kcal Total: -94.68 -4.00 -98.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358181696.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.883 kcal (2) G-P(sol) polarization free energy of solvation -94.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds