Wall clock time and date at job start Wed Apr 1 2020 05:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46957 * 2 1 4 4 C 1.50699 * 109.47247 * 240.00440 * 2 1 3 5 5 O 1.21287 * 119.99849 * 270.18191 * 4 2 1 6 6 N 1.34776 * 120.00303 * 90.17801 * 4 2 1 7 7 C 1.46494 * 119.99926 * 354.85008 * 6 4 2 8 8 C 1.46505 * 119.99822 * 174.84480 * 6 4 2 9 9 C 1.50700 * 109.46992 * 89.99906 * 8 6 4 10 10 H 1.08006 * 120.00009 * 0.02562 * 9 8 6 11 11 C 1.37878 * 120.00179 * 179.97438 * 9 8 6 12 12 N 1.31512 * 120.00187 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99618 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47137 * 89.99907 * 13 11 9 15 15 H 1.48499 * 109.46841 * 209.99415 * 13 11 9 16 16 H 1.48497 * 109.47511 * 329.99609 * 13 11 9 17 17 N 1.46894 * 109.47413 * 119.99696 * 2 1 3 18 18 C 1.46848 * 111.00002 * 175.67661 * 17 2 1 19 19 C 1.53039 * 109.52330 * 185.84007 * 18 17 2 20 20 C 1.53121 * 109.28035 * 300.82662 * 19 18 17 21 21 C 1.53120 * 109.16360 * 57.64813 * 20 19 18 22 22 H 1.09012 * 109.53116 * 62.31086 * 21 20 19 23 23 C 1.52996 * 109.50548 * 182.40302 * 21 20 19 24 24 S 1.81399 * 109.47596 * 294.81068 * 23 21 20 25 25 N 1.65595 * 104.44991 * 179.97438 * 24 23 21 26 26 O 1.42100 * 110.54017 * 291.62121 * 24 23 21 27 27 O 1.42094 * 110.54200 * 68.37044 * 24 23 21 28 28 C 1.46849 * 111.00335 * 299.89244 * 17 2 1 29 29 H 1.09000 * 109.47475 * 57.08368 * 1 2 3 30 30 H 1.09006 * 109.47142 * 177.08357 * 1 2 3 31 31 H 1.09002 * 109.47604 * 297.08067 * 1 2 3 32 32 H 1.08995 * 109.47575 * 94.47775 * 7 6 4 33 33 H 1.09004 * 109.47002 * 214.48105 * 7 6 4 34 34 H 1.09002 * 109.47392 * 334.47421 * 7 6 4 35 35 H 1.08997 * 109.46981 * 210.00325 * 8 6 4 36 36 H 1.08998 * 109.47275 * 330.00435 * 8 6 4 37 37 H 0.96997 * 120.00031 * 180.02562 * 12 11 9 38 38 H 1.08992 * 109.46528 * 305.85867 * 18 17 2 39 39 H 1.08998 * 109.45964 * 65.83152 * 18 17 2 40 40 H 1.08998 * 109.50841 * 180.88280 * 19 18 17 41 41 H 1.09007 * 109.53475 * 60.78386 * 19 18 17 42 42 H 1.09000 * 109.52178 * 297.74866 * 20 19 18 43 43 H 1.08995 * 109.52407 * 177.56092 * 20 19 18 44 44 H 1.09002 * 109.46625 * 54.81004 * 23 21 20 45 45 H 1.08998 * 109.46998 * 174.80482 * 23 21 20 46 46 H 0.97003 * 119.99576 * 150.00177 * 25 24 23 47 47 H 0.96994 * 120.00288 * 329.99822 * 25 24 23 48 48 H 1.09000 * 109.45693 * 294.17709 * 28 17 2 49 49 H 1.09004 * 109.45968 * 54.13817 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.2313 -1.9064 -1.2015 6 7 2.2604 -0.0165 -2.3632 7 6 1.9141 1.4051 -2.4337 8 6 2.8548 -0.6842 -3.5240 9 6 1.7611 -1.2525 -4.3911 10 1 0.7267 -1.1285 -4.1063 11 6 2.0809 -1.9300 -5.5486 12 7 1.1265 -2.4256 -6.3056 13 14 3.8700 -2.1439 -6.0415 14 1 4.3983 -3.4014 -5.4543 15 1 3.9713 -2.2081 -7.5217 16 1 4.6626 -0.9925 -5.5406 17 7 2.0197 -0.6924 1.1994 18 6 3.4840 -0.8021 1.1827 19 6 3.9467 -1.6522 2.3682 20 6 3.4799 -0.9986 3.6718 21 6 1.9560 -0.8519 3.6430 22 1 1.4959 -1.8384 3.5837 23 6 1.4866 -0.1452 4.9162 24 16 1.8352 -1.1948 6.3540 25 7 1.2844 -0.3197 7.6476 26 8 1.0116 -2.3526 6.3374 27 8 3.2360 -1.2951 6.5702 28 6 1.5510 -0.0250 2.4206 29 1 -0.3634 0.5584 -0.8627 30 1 -0.3634 -1.0264 -0.0523 31 1 -0.3634 0.4678 0.9150 32 1 2.7903 2.0052 -2.1886 33 1 1.5780 1.6477 -3.4419 34 1 1.1160 1.6204 -1.7232 35 1 3.4369 0.0362 -4.0987 36 1 3.5059 -1.4901 -3.1856 37 1 1.3515 -2.9025 -7.1196 38 1 3.8024 -1.2723 0.2524 39 1 3.9235 0.1927 1.2558 40 1 5.0345 -1.7205 2.3645 41 1 3.5191 -2.6518 2.2888 42 1 3.9386 -0.0148 3.7706 43 1 3.7698 -1.6232 4.5167 44 1 2.0150 0.8024 5.0214 45 1 0.4146 0.0416 4.8539 46 1 0.9522 -0.7767 8.4360 47 1 1.2942 0.6497 7.6168 48 1 1.9996 0.9661 2.4878 49 1 0.4655 0.0692 2.3892 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358181698.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:22 Heat of formation + Delta-G solvation = -133.307928 kcal Electronic energy + Delta-G solvation = -29938.560003 eV Core-core repulsion = 25833.543414 eV Total energy + Delta-G solvation = -4105.016589 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.37699 -39.68057 -38.05312 -36.97067 -36.64071 -35.93556 -34.67280 -33.99600 -33.51092 -31.37289 -30.08129 -28.33911 -27.41691 -26.03554 -24.85388 -23.18553 -22.72568 -20.84313 -20.36310 -19.79348 -19.14150 -18.51311 -18.23908 -18.07418 -17.46326 -17.11074 -16.68425 -16.47638 -16.16683 -15.82580 -15.48705 -15.38998 -15.04337 -14.89700 -14.60504 -14.41961 -14.21151 -14.00269 -13.67662 -13.52785 -13.46263 -13.27200 -13.15731 -13.10520 -13.00769 -12.91766 -12.75687 -12.62297 -12.55383 -12.41780 -12.27285 -12.04419 -11.93836 -11.75821 -11.70128 -11.47153 -11.20670 -11.05155 -10.84072 -10.45797 -9.38791 -9.21614 -8.34561 -6.39160 -0.67749 1.30604 1.35453 1.43237 1.78423 2.02135 2.20624 2.29810 2.74209 2.91946 2.99736 3.39807 3.47214 3.61784 3.70719 3.80659 4.06738 4.08200 4.14449 4.23917 4.30390 4.35634 4.40712 4.50755 4.55226 4.63364 4.68012 4.73078 4.77046 4.82995 4.84293 4.92364 4.93013 4.94509 5.00129 5.08917 5.19135 5.28421 5.31531 5.38549 5.45234 5.61575 5.96976 6.16904 6.24612 6.42583 6.61957 6.72556 7.21664 7.46708 8.82543 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024761 B = 0.002296 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.552313 B =12189.876689 C =12503.991215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.079 3.921 3 H 0.091 0.909 4 C 0.500 3.500 5 O -0.577 6.577 6 N -0.610 5.610 7 C 0.074 3.926 8 C 0.226 3.774 9 C -0.532 4.532 10 H 0.027 0.973 11 C 0.008 3.992 12 N -0.946 5.946 13 Si 0.948 3.052 14 H -0.279 1.279 15 H -0.274 1.274 16 H -0.237 1.237 17 N -0.542 5.542 18 C 0.054 3.946 19 C -0.113 4.113 20 C -0.143 4.143 21 C -0.080 4.080 22 H 0.076 0.924 23 C -0.596 4.596 24 S 2.618 3.382 25 N -1.238 6.238 26 O -1.011 7.011 27 O -0.998 6.998 28 C 0.066 3.934 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.051 0.949 36 H 0.014 0.986 37 H 0.268 0.732 38 H 0.046 0.954 39 H 0.051 0.949 40 H 0.079 0.921 41 H 0.051 0.949 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.174 0.826 45 H 0.171 0.829 46 H 0.424 0.576 47 H 0.429 0.571 48 H 0.066 0.934 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.384 16.764 28.451 33.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.032 4.032 3 H 0.109 0.891 4 C 0.288 3.712 5 O -0.455 6.455 6 N -0.342 5.342 7 C -0.068 4.068 8 C 0.103 3.897 9 C -0.571 4.571 10 H 0.046 0.954 11 C -0.189 4.189 12 N -0.586 5.586 13 Si 0.771 3.229 14 H -0.205 1.205 15 H -0.199 1.199 16 H -0.160 1.160 17 N -0.268 5.268 18 C -0.074 4.074 19 C -0.151 4.151 20 C -0.180 4.180 21 C -0.101 4.101 22 H 0.095 0.905 23 C -0.728 4.728 24 S 2.712 3.288 25 N -0.915 5.915 26 O -1.001 7.001 27 O -0.987 6.987 28 C -0.062 4.062 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.126 0.874 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.069 0.931 36 H 0.032 0.968 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.112 0.888 43 H 0.093 0.907 44 H 0.192 0.808 45 H 0.189 0.811 46 H 0.255 0.745 47 H 0.258 0.742 48 H 0.084 0.916 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.749 14.613 28.210 31.818 hybrid contribution 0.317 0.444 -1.016 1.153 sum 2.066 15.057 27.194 31.153 Atomic orbital electron populations 1.21854 0.90939 1.02538 1.04356 1.21581 0.98041 0.96245 0.87321 0.89131 1.21205 0.77409 0.87303 0.85235 1.90655 1.52907 1.16994 1.84986 1.48005 1.61645 1.11920 1.12674 1.22019 1.01798 0.79152 1.03817 1.19296 0.93145 0.93165 0.84088 1.21542 0.93383 1.35571 1.06567 0.95444 1.25875 1.02570 0.94363 0.96120 1.70051 1.34922 1.38288 1.15348 0.85714 0.79443 0.79948 0.77811 1.20487 1.19914 1.15964 1.61481 1.10909 1.53116 1.01310 1.22097 0.87102 0.99174 0.99019 1.21503 1.01025 0.98971 0.93623 1.22113 0.94781 1.03245 0.97907 1.20912 0.96250 0.99967 0.92945 0.90512 1.30309 1.14656 1.15744 1.12120 1.04303 0.73536 0.74636 0.76287 1.52835 1.84590 1.20575 1.33497 1.93568 1.70029 1.49479 1.87035 1.93578 1.34251 1.86153 1.84707 1.22263 1.02137 0.95445 0.86346 0.91095 0.94012 0.87416 0.90344 0.91631 0.88968 0.93116 0.96812 0.92317 0.93516 0.93102 0.90212 0.93023 0.88775 0.90725 0.80832 0.81073 0.74531 0.74157 0.91567 0.87992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.87 71.98 0.64 -2.65 16 2 C 0.08 2.14 1.62 44.17 0.07 2.22 16 3 H 0.09 1.82 6.78 -2.39 -0.02 1.80 16 4 C 0.50 20.27 5.64 87.66 0.49 20.77 16 5 O -0.58 -29.96 15.07 -3.05 -0.05 -30.01 16 6 N -0.61 -24.55 2.86 -851.14 -2.43 -26.99 16 7 C 0.07 2.02 9.88 127.77 1.26 3.28 16 8 C 0.23 11.08 4.21 85.63 0.36 11.44 16 9 C -0.53 -31.74 9.94 25.60 0.25 -31.49 16 10 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 11 C 0.01 0.51 5.47 84.66 0.46 0.97 16 12 N -0.95 -60.69 13.96 21.45 0.30 -60.39 16 13 Si 0.95 45.12 27.47 68.60 1.88 47.01 16 14 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 15 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 16 H -0.24 -10.02 6.54 99.48 0.65 -9.36 16 17 N -0.54 -14.08 4.28 -875.55 -3.75 -17.83 16 18 C 0.05 1.44 5.11 86.33 0.44 1.88 16 19 C -0.11 -2.71 6.09 30.65 0.19 -2.53 16 20 C -0.14 -2.55 4.90 30.67 0.15 -2.40 16 21 C -0.08 -1.23 2.35 -10.74 -0.03 -1.25 16 22 H 0.08 1.52 8.14 -2.38 -0.02 1.51 16 23 C -0.60 -3.44 5.62 71.98 0.40 -3.04 16 24 S 2.62 33.58 5.62 -56.49 -0.32 33.27 16 25 N -1.24 -5.48 9.36 37.02 0.35 -5.13 16 26 O -1.01 -23.19 18.10 -127.65 -2.31 -25.50 16 27 O -1.00 -20.38 15.91 -127.65 -2.03 -22.41 16 28 C 0.07 1.02 4.51 86.32 0.39 1.40 16 29 H 0.07 1.62 7.01 -2.39 -0.02 1.60 16 30 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.11 1.57 6.13 -2.39 -0.01 1.55 16 32 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.06 1.94 8.11 -2.38 -0.02 1.92 16 34 H 0.09 1.93 5.27 -2.39 -0.01 1.91 16 35 H 0.05 2.27 7.13 -2.39 -0.02 2.25 16 36 H 0.01 0.73 6.93 -2.39 -0.02 0.72 16 37 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 38 H 0.05 1.66 5.99 -2.39 -0.01 1.65 16 39 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 42 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.07 1.47 5.79 -2.39 -0.01 1.46 16 44 H 0.17 -0.28 8.14 -2.39 -0.02 -0.30 16 45 H 0.17 0.00 8.14 -2.39 -0.02 -0.01 16 46 H 0.42 1.65 8.96 -96.75 -0.87 0.78 16 47 H 0.43 -1.17 8.96 -96.75 -0.87 -2.03 16 48 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.10 1.22 5.95 -2.39 -0.01 1.20 16 Total: -1.00 -97.22 388.39 -4.08 -101.30 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -0.81 Total: 8.09 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 5.09 Total: -1.40 kcal Atomic # 7 Polarization: -104.81 SS G_CDS: -5.53 Total: -110.34 kcal Atomic # 8 Polarization: -73.53 SS G_CDS: -4.39 Total: -77.92 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.88 Total: 47.01 kcal Atomic # 16 Polarization: 33.58 SS G_CDS: -0.32 Total: 33.27 kcal Total: -97.22 -4.08 -101.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358181698.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.011 kcal (2) G-P(sol) polarization free energy of solvation -97.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds