Wall clock time and date at job start Wed Apr 1 2020 05:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 S 1.65600 * 119.99915 * 2 1 4 4 O 1.42096 * 104.27483 * 308.92378 * 3 2 1 5 5 O 1.42102 * 104.27808 * 181.06604 * 3 2 1 6 6 C 1.81405 * 104.45028 * 64.99743 * 3 2 1 7 7 H 1.08997 * 109.53207 * 300.09859 * 6 3 2 8 8 C 1.53113 * 109.50368 * 60.19878 * 6 3 2 9 9 C 1.53123 * 109.16157 * 177.59509 * 8 6 3 10 10 C 1.53036 * 109.27643 * 302.34254 * 9 8 6 11 11 N 1.46847 * 109.52322 * 59.18162 * 10 9 8 12 12 C 1.46892 * 111.00406 * 174.15965 * 11 10 9 13 13 H 1.09000 * 109.47688 * 168.02588 * 12 11 10 14 14 C 1.53008 * 109.47092 * 48.02411 * 12 11 10 15 15 C 1.50699 * 109.47001 * 288.02425 * 12 11 10 16 16 O 1.21288 * 119.99973 * 27.27859 * 15 12 11 17 17 N 1.34778 * 120.00203 * 207.27447 * 15 12 11 18 18 C 1.46499 * 120.00125 * 353.38241 * 17 15 12 19 19 C 1.46502 * 120.00215 * 173.38834 * 17 15 12 20 20 C 1.50704 * 109.47414 * 89.99671 * 19 17 15 21 21 H 1.07998 * 119.99325 * 0.02562 * 20 19 17 22 22 C 1.37868 * 119.99781 * 180.02562 * 20 19 17 23 23 N 1.31518 * 119.99795 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00515 * 0.02562 * 22 20 19 25 25 H 1.48491 * 109.47224 * 89.99793 * 24 22 20 26 26 H 1.48502 * 109.47372 * 210.00420 * 24 22 20 27 27 H 1.48505 * 109.46795 * 329.99880 * 24 22 20 28 28 C 1.46857 * 111.19767 * 298.25650 * 11 10 9 29 29 H 1.08997 * 109.47122 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47523 * 300.00496 * 1 2 3 31 31 H 1.09001 * 109.47106 * 60.00475 * 1 2 3 32 32 H 0.97001 * 120.00285 * 179.97438 * 2 1 3 33 33 H 1.08998 * 109.52606 * 57.68932 * 8 6 3 34 34 H 1.09003 * 109.57704 * 297.53397 * 8 6 3 35 35 H 1.08999 * 109.50300 * 182.40464 * 9 8 6 36 36 H 1.08994 * 109.53222 * 62.30370 * 9 8 6 37 37 H 1.08997 * 109.46486 * 299.16314 * 10 9 8 38 38 H 1.08995 * 109.46304 * 179.19297 * 10 9 8 39 39 H 1.08999 * 109.46871 * 292.50413 * 14 12 11 40 40 H 1.08997 * 109.46860 * 52.50476 * 14 12 11 41 41 H 1.08997 * 109.46919 * 172.50558 * 14 12 11 42 42 H 1.09003 * 109.46700 * 84.49087 * 18 17 15 43 43 H 1.08998 * 109.47626 * 204.49389 * 18 17 15 44 44 H 1.09002 * 109.47252 * 324.49822 * 18 17 15 45 45 H 1.09000 * 109.46938 * 210.00153 * 19 17 15 46 46 H 1.09001 * 109.46721 * 330.00070 * 19 17 15 47 47 H 0.97005 * 119.99713 * 179.97438 * 23 22 20 48 48 H 1.09001 * 109.46432 * 181.75874 * 28 11 10 49 49 H 1.09002 * 109.45747 * 301.72501 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7188 2.1702 -1.0714 5 8 3.6606 1.0492 -0.0256 6 6 1.8763 2.1974 1.5920 7 1 0.7986 2.3486 1.6527 8 6 2.3290 1.2813 2.7322 9 6 2.0282 1.9596 4.0716 10 6 2.7367 3.3151 4.1219 11 7 2.2689 4.1548 3.0117 12 6 2.8235 5.5116 3.1078 13 1 2.6400 6.0461 2.1757 14 6 4.3303 5.4300 3.3608 15 6 2.1620 6.2451 4.2459 16 8 1.7170 5.6261 5.1893 17 7 2.0648 7.5890 4.2156 18 6 2.7274 8.3476 3.1518 19 6 1.2968 8.2914 5.2467 20 6 2.2024 8.6348 6.4013 21 1 3.2458 8.3578 6.3699 22 6 1.6989 9.3023 7.4975 23 7 2.4893 9.6024 8.5049 24 14 -0.1061 9.7806 7.5520 25 1 -0.8906 8.6826 8.1715 26 1 -0.2661 11.0185 8.3565 27 1 -0.5963 10.0211 6.1709 28 6 2.5892 3.5461 1.7141 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.9500 -0.8400 0.0004 33 1 3.4004 1.0984 2.6491 34 1 1.7924 0.3342 2.6748 35 1 2.3870 1.3310 4.8866 36 1 0.9529 2.1070 4.1721 37 1 3.8129 3.1658 4.0359 38 1 2.5128 3.8070 5.0684 39 1 4.5101 5.0158 4.3529 40 1 4.7905 4.7877 2.6100 41 1 4.7635 6.4283 3.2999 42 1 2.0840 8.3778 2.2724 43 1 2.9202 9.3637 3.4959 44 1 3.6708 7.8656 2.8953 45 1 0.8789 9.2069 4.8280 46 1 0.4882 7.6501 5.5975 47 1 2.1351 10.0724 9.2760 48 1 2.2582 4.2058 0.9119 49 1 3.6662 3.3958 1.6395 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000365276529.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:36 Heat of formation + Delta-G solvation = -121.602130 kcal Electronic energy + Delta-G solvation = -30322.409569 eV Core-core repulsion = 26217.900581 eV Total energy + Delta-G solvation = -4104.508987 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.40628 -39.54169 -38.24212 -37.09316 -36.61743 -36.01880 -35.42109 -34.61209 -32.15588 -31.33618 -29.95857 -27.52927 -26.82294 -26.30891 -24.93856 -24.64791 -23.10862 -21.09191 -20.16810 -19.90790 -19.12815 -18.74619 -18.03656 -17.97142 -17.19770 -17.04074 -16.57489 -16.35631 -15.89037 -15.85002 -15.68171 -15.44587 -15.19592 -14.80196 -14.52371 -14.38275 -14.22051 -14.05483 -13.79444 -13.73144 -13.67524 -13.37000 -13.30072 -13.26175 -13.15504 -13.04036 -12.94918 -12.78879 -12.50694 -12.41327 -12.40793 -12.09418 -12.02245 -11.80325 -11.74515 -11.57358 -11.36578 -10.82938 -10.48259 -10.31142 -9.39301 -9.29260 -8.33726 -6.38373 -0.80051 1.32736 1.36588 1.45175 1.73300 1.79791 2.17669 2.31084 2.68876 3.00646 3.01081 3.11265 3.35674 3.58044 3.64740 3.94061 3.99058 4.02517 4.13352 4.19106 4.25789 4.32812 4.37906 4.52839 4.56678 4.59934 4.66911 4.68168 4.70092 4.75280 4.81701 4.84982 4.92102 4.93151 4.95766 5.00391 5.06407 5.11069 5.21821 5.35194 5.46099 5.65271 5.89340 6.03581 6.13761 6.25014 6.62703 6.73007 7.22577 7.46388 8.83381 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021451 B = 0.002548 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.999525 B =10985.979571 C =11144.578103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -1.112 6.112 3 S 2.634 3.366 4 O -0.989 6.989 5 O -0.986 6.986 6 C -0.574 4.574 7 H 0.159 0.841 8 C -0.101 4.101 9 C -0.103 4.103 10 C 0.036 3.964 11 N -0.517 5.517 12 C 0.070 3.930 13 H 0.130 0.870 14 C -0.177 4.177 15 C 0.509 3.491 16 O -0.574 6.574 17 N -0.609 5.609 18 C 0.073 3.927 19 C 0.226 3.774 20 C -0.531 4.531 21 H 0.026 0.974 22 C 0.009 3.991 23 N -0.947 5.947 24 Si 0.949 3.051 25 H -0.277 1.277 26 H -0.276 1.276 27 H -0.237 1.237 28 C 0.058 3.942 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.427 0.573 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.041 0.959 38 H 0.072 0.928 39 H 0.045 0.955 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.050 0.950 46 H 0.017 0.983 47 H 0.268 0.732 48 H 0.102 0.898 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.755 -19.682 -20.555 28.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.875 5.875 3 S 2.726 3.274 4 O -0.978 6.978 5 O -0.976 6.976 6 C -0.685 4.685 7 H 0.177 0.823 8 C -0.139 4.139 9 C -0.142 4.142 10 C -0.091 4.091 11 N -0.242 5.242 12 C -0.041 4.041 13 H 0.147 0.853 14 C -0.236 4.236 15 C 0.297 3.703 16 O -0.453 6.453 17 N -0.341 5.341 18 C -0.069 4.069 19 C 0.104 3.896 20 C -0.570 4.570 21 H 0.045 0.955 22 C -0.189 4.189 23 N -0.588 5.588 24 Si 0.772 3.228 25 H -0.202 1.202 26 H -0.201 1.201 27 H -0.161 1.161 28 C -0.071 4.071 29 H 0.125 0.875 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.263 0.737 33 H 0.098 0.902 34 H 0.126 0.874 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.059 0.941 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.068 0.932 46 H 0.035 0.965 47 H 0.077 0.923 48 H 0.120 0.880 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.072 -19.389 -20.613 28.465 hybrid contribution 0.297 0.290 1.522 1.578 sum -2.776 -19.099 -19.091 27.146 Atomic orbital electron populations 1.21777 0.77349 1.06090 1.02418 1.55040 1.16766 1.23753 1.91907 1.04252 0.72895 0.74073 0.76132 1.93562 1.79277 1.73584 1.51402 1.93554 1.34678 1.81722 1.87612 1.30498 1.12486 1.05903 1.19603 0.82339 1.21436 1.02707 0.97602 0.92190 1.21463 1.01213 0.94196 0.97296 1.22430 0.97215 0.94515 0.94951 1.61726 1.59534 1.00622 1.02334 1.21680 0.93632 0.90860 0.97960 0.85258 1.22370 0.94235 1.04310 1.02655 1.21010 0.79307 0.82166 0.87815 1.90563 1.50320 1.67269 1.37185 1.47930 1.51752 1.06019 1.28360 1.22038 0.97960 0.97296 0.89630 1.19323 0.91343 0.92273 0.86691 1.21543 0.96210 1.36511 1.02711 0.95524 1.25869 1.03105 0.95301 0.94605 1.70060 1.38130 1.42224 1.08351 0.85698 0.79030 0.77942 0.80154 1.20244 1.20107 1.16051 1.21971 0.98552 0.93559 0.93068 0.87462 0.90661 0.92232 0.73681 0.90160 0.87381 0.89901 0.91529 0.94132 0.91016 0.93534 0.88953 0.90258 0.89961 0.91146 0.89858 0.93182 0.96534 0.92337 0.87965 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.41 11.03 127.77 1.41 1.82 16 2 N -1.11 -10.17 5.85 -206.55 -1.21 -11.38 16 3 S 2.63 42.19 4.90 -56.49 -0.28 41.92 16 4 O -0.99 -22.66 17.73 -127.65 -2.26 -24.93 16 5 O -0.99 -21.54 17.90 -127.65 -2.28 -23.83 16 6 C -0.57 -8.55 2.87 30.64 0.09 -8.46 16 7 H 0.16 1.96 7.77 -2.39 -0.02 1.94 16 8 C -0.10 -1.40 5.15 30.67 0.16 -1.24 16 9 C -0.10 -2.07 6.09 30.65 0.19 -1.88 16 10 C 0.04 0.99 4.25 86.33 0.37 1.36 16 11 N -0.52 -13.49 4.46 -875.50 -3.90 -17.39 16 12 C 0.07 1.95 1.89 44.17 0.08 2.04 16 13 H 0.13 2.78 6.89 -2.39 -0.02 2.76 16 14 C -0.18 -4.39 7.96 71.98 0.57 -3.81 16 15 C 0.51 20.33 6.81 87.66 0.60 20.93 16 16 O -0.57 -28.33 13.73 -3.05 -0.04 -28.37 16 17 N -0.61 -24.46 2.86 -851.11 -2.43 -26.89 16 18 C 0.07 2.03 9.60 127.77 1.23 3.26 16 19 C 0.23 11.00 4.15 85.63 0.36 11.35 16 20 C -0.53 -31.35 9.94 25.60 0.25 -31.09 16 21 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 22 C 0.01 0.53 5.47 84.65 0.46 0.99 16 23 N -0.95 -60.28 13.96 21.44 0.30 -59.98 16 24 Si 0.95 44.59 27.47 68.60 1.88 46.48 16 25 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 26 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 27 H -0.24 -9.97 6.54 99.48 0.65 -9.32 16 28 C 0.06 1.10 4.51 86.32 0.39 1.49 16 29 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.07 0.26 7.73 -2.39 -0.02 0.24 16 31 H 0.06 0.49 8.04 -2.39 -0.02 0.47 16 32 H 0.43 2.43 8.92 -96.75 -0.86 1.57 16 33 H 0.08 1.12 8.04 -2.39 -0.02 1.10 16 34 H 0.11 0.84 8.01 -2.39 -0.02 0.82 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.04 1.02 6.74 -2.39 -0.02 1.01 16 38 H 0.07 2.64 5.54 -2.39 -0.01 2.62 16 39 H 0.05 1.38 6.92 -2.39 -0.02 1.36 16 40 H 0.09 1.75 6.85 -2.39 -0.02 1.74 16 41 H 0.08 1.84 6.40 -2.39 -0.02 1.83 16 42 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.07 2.09 8.03 -2.39 -0.02 2.08 16 44 H 0.08 1.91 5.40 -2.39 -0.01 1.90 16 45 H 0.05 2.23 7.13 -2.39 -0.02 2.21 16 46 H 0.02 0.87 6.95 -2.39 -0.02 0.85 16 47 H 0.27 15.82 8.31 -92.70 -0.77 15.05 16 48 H 0.10 1.67 7.96 -2.39 -0.02 1.65 16 49 H 0.06 1.03 6.98 -2.39 -0.02 1.01 16 Total: -1.00 -88.37 388.57 -4.03 -92.40 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.04 Total: 15.23 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 6.15 Total: -3.25 kcal Atomic # 7 Polarization: -108.40 SS G_CDS: -7.24 Total: -115.64 kcal Atomic # 8 Polarization: -72.54 SS G_CDS: -4.59 Total: -77.13 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.48 kcal Atomic # 16 Polarization: 42.19 SS G_CDS: -0.28 Total: 41.92 kcal Total: -88.37 -4.03 -92.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365276529.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.199 kcal (2) G-P(sol) polarization free energy of solvation -88.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds