Wall clock time and date at job start Wed Apr 1 2020 05:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 S 1.65599 * 120.00179 * 2 1 4 4 O 1.42100 * 104.27406 * 178.73495 * 3 2 1 5 5 O 1.42097 * 104.27790 * 50.87723 * 3 2 1 6 6 C 1.81396 * 104.45030 * 294.80598 * 3 2 1 7 7 H 1.09008 * 109.53430 * 61.92765 * 6 3 2 8 8 C 1.53124 * 109.50713 * 301.83461 * 6 3 2 9 9 C 1.53115 * 109.16440 * 182.40096 * 8 6 3 10 10 C 1.53040 * 109.27571 * 57.65518 * 9 8 6 11 11 N 1.46851 * 109.52128 * 300.81929 * 10 9 8 12 12 C 1.46905 * 110.99748 * 185.83950 * 11 10 9 13 13 H 1.08997 * 109.47068 * 186.04870 * 12 11 10 14 14 C 1.52997 * 109.47237 * 306.04684 * 12 11 10 15 15 C 1.50704 * 109.46926 * 66.04704 * 12 11 10 16 16 O 1.21272 * 119.99969 * 359.97438 * 15 12 11 17 17 N 1.34778 * 119.99952 * 180.02562 * 15 12 11 18 18 C 1.46507 * 119.99837 * 359.97438 * 17 15 12 19 19 C 1.46495 * 120.00100 * 180.02562 * 17 15 12 20 20 C 1.50688 * 109.47448 * 89.99692 * 19 17 15 21 21 H 1.08005 * 120.00100 * 0.02562 * 20 19 17 22 22 C 1.37877 * 120.00444 * 179.97438 * 20 19 17 23 23 N 1.31520 * 119.99779 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00473 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46792 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.47239 * 119.99858 * 24 22 20 27 27 H 1.48500 * 109.47314 * 239.99913 * 24 22 20 28 28 C 1.46844 * 111.20017 * 61.74526 * 11 10 9 29 29 H 1.08997 * 109.46924 * 64.93540 * 1 2 3 30 30 H 1.08993 * 109.47311 * 184.94232 * 1 2 3 31 31 H 1.09008 * 109.46823 * 304.93869 * 1 2 3 32 32 H 0.96999 * 119.99605 * 179.97438 * 2 1 3 33 33 H 1.09004 * 109.51635 * 62.49702 * 8 6 3 34 34 H 1.08995 * 109.51915 * 302.31115 * 8 6 3 35 35 H 1.09001 * 109.50374 * 297.71512 * 9 8 6 36 36 H 1.08997 * 109.50093 * 177.59200 * 9 8 6 37 37 H 1.08997 * 109.45813 * 180.80240 * 10 9 8 38 38 H 1.09000 * 109.45305 * 60.82988 * 10 9 8 39 39 H 1.09008 * 109.47189 * 59.99677 * 14 12 11 40 40 H 1.09005 * 109.47229 * 300.00412 * 14 12 11 41 41 H 1.08999 * 109.47457 * 180.02562 * 14 12 11 42 42 H 1.09007 * 109.46505 * 90.00017 * 18 17 15 43 43 H 1.08997 * 109.47241 * 210.00316 * 18 17 15 44 44 H 1.08997 * 109.47087 * 330.00796 * 18 17 15 45 45 H 1.09008 * 109.46775 * 209.99830 * 19 17 15 46 46 H 1.09002 * 109.47069 * 329.99365 * 19 17 15 47 47 H 0.96993 * 120.00373 * 179.97438 * 23 22 20 48 48 H 1.08999 * 109.46455 * 58.26894 * 28 11 10 49 49 H 1.08995 * 109.46199 * 178.23994 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2931 1.4341 0.0000 4 8 3.6606 1.0491 0.0304 5 8 1.7158 2.1721 1.0683 6 6 1.8812 2.1946 -1.5945 7 1 0.8080 2.3787 -1.6441 8 6 2.2914 1.2538 -2.7309 9 6 1.9955 1.9282 -4.0733 10 6 2.7452 3.2605 -4.1455 11 7 2.3172 4.1249 -3.0382 12 6 2.9126 5.4629 -3.1545 13 1 2.6669 6.0481 -2.2684 14 6 4.4324 5.3360 -3.2766 15 6 2.3659 6.1512 -4.3787 16 8 1.5602 5.5830 -5.0848 17 7 2.7733 7.3979 -4.6892 18 6 3.7470 8.0840 -3.8363 19 6 2.2415 8.0672 -5.8788 20 6 0.9996 8.8365 -5.5095 21 1 0.6422 8.8281 -4.4903 22 6 0.3199 9.5520 -6.4723 23 7 0.7552 9.5627 -7.7133 24 14 -1.2201 10.5051 -6.0146 25 1 -1.4973 10.3316 -4.5661 26 1 -1.0166 11.9461 -6.3100 27 1 -2.3704 9.9958 -6.8037 28 6 2.6341 3.5192 -1.7385 29 1 -0.3633 0.4353 -0.9309 30 1 -0.3633 -1.0238 0.0885 31 1 -0.3633 0.5886 0.8425 32 1 1.9500 -0.8401 0.0004 33 1 1.7253 0.3252 -2.6571 34 1 3.3574 1.0384 -2.6585 35 1 0.9242 2.1082 -4.1618 36 1 2.3249 1.2809 -4.8861 37 1 2.5253 3.7499 -5.0942 38 1 3.8172 3.0783 -4.0706 39 1 4.6781 4.7506 -4.1628 40 1 4.8277 4.8380 -2.3912 41 1 4.8742 6.3287 -3.3625 42 1 4.7555 7.8636 -4.1865 43 1 3.5741 9.1593 -3.8798 44 1 3.6361 7.7395 -2.8082 45 1 2.9900 8.7538 -6.2745 46 1 1.9958 7.3222 -6.6356 47 1 0.2769 10.0657 -8.3908 48 1 3.7067 3.3359 -1.6751 49 1 2.3336 4.1965 -0.9392 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000365276533.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:40 Heat of formation + Delta-G solvation = -87.735779 kcal Electronic energy + Delta-G solvation = -30324.864882 eV Core-core repulsion = 26221.824450 eV Total energy + Delta-G solvation = -4103.040432 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.15867 -38.24062 -37.39312 -36.25213 -35.45770 -34.87632 -34.43039 -32.59692 -31.28272 -29.96284 -27.54438 -26.39982 -26.21822 -25.04331 -23.88915 -23.48108 -21.89465 -20.18911 -19.42458 -18.53836 -18.01777 -17.10501 -16.65278 -16.52322 -16.30569 -15.88793 -15.37468 -14.95442 -14.91011 -14.62956 -14.53795 -14.44121 -13.93617 -13.82268 -13.60309 -13.22729 -13.08273 -12.95894 -12.84240 -12.38881 -12.33938 -12.28480 -12.18211 -12.08817 -12.04824 -11.97390 -11.44343 -11.33403 -11.24264 -11.13152 -10.92206 -10.85863 -10.70260 -10.58629 -10.43071 -10.15131 -9.89057 -9.59515 -8.83974 -8.44232 -8.22120 -7.62949 -6.04876 -4.09331 -0.05791 2.38124 3.29819 3.34150 3.37225 3.39876 3.44682 3.65620 3.84259 4.11016 4.15061 4.37848 4.45493 4.60073 4.73995 4.86550 4.99046 5.00557 5.04841 5.09440 5.13534 5.23554 5.29811 5.31585 5.33688 5.39836 5.44203 5.47014 5.54727 5.60843 5.69310 5.73765 5.80347 5.89686 6.02254 6.15144 6.25716 6.26489 6.52764 6.88693 7.04988 7.11547 7.42794 7.53983 7.92018 8.22961 8.40988 8.90731 9.10831 9.56029 11.03223 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017355 B = 0.002623 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.009199 B =10672.520385 C =11071.497203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.122 6.122 3 S 2.614 3.386 4 O -0.958 6.958 5 O -0.955 6.955 6 C -0.581 4.581 7 H 0.147 0.853 8 C -0.102 4.102 9 C -0.106 4.106 10 C 0.044 3.956 11 N -0.501 5.501 12 C 0.061 3.939 13 H 0.104 0.896 14 C -0.198 4.198 15 C 0.513 3.487 16 O -0.523 6.523 17 N -0.602 5.602 18 C 0.081 3.919 19 C 0.247 3.753 20 C -0.524 4.524 21 H 0.058 0.942 22 C 0.060 3.940 23 N -0.896 5.896 24 Si 0.898 3.102 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.283 1.283 28 C 0.069 3.931 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.417 0.583 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.033 0.967 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.083 0.917 42 H 0.047 0.953 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.032 0.968 46 H 0.043 0.957 47 H 0.262 0.738 48 H 0.050 0.950 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.680 -18.978 13.731 24.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.881 5.881 3 S 2.705 3.295 4 O -0.948 6.948 5 O -0.945 6.945 6 C -0.692 4.692 7 H 0.165 0.835 8 C -0.141 4.141 9 C -0.145 4.145 10 C -0.083 4.083 11 N -0.225 5.225 12 C -0.051 4.051 13 H 0.122 0.878 14 C -0.257 4.257 15 C 0.299 3.701 16 O -0.399 6.399 17 N -0.335 5.335 18 C -0.063 4.063 19 C 0.128 3.872 20 C -0.563 4.563 21 H 0.076 0.924 22 C -0.142 4.142 23 N -0.535 5.535 24 Si 0.726 3.274 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.209 1.209 28 C -0.060 4.060 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.251 0.749 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.122 0.878 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.076 0.924 45 H 0.050 0.950 46 H 0.061 0.939 47 H 0.072 0.928 48 H 0.068 0.932 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.104 -18.659 13.845 23.788 hybrid contribution -0.240 0.255 -0.298 0.460 sum 4.864 -18.404 13.547 23.364 Atomic orbital electron populations 1.21533 0.78578 1.04372 1.02148 1.55333 1.16049 1.24469 1.92242 1.05056 0.73735 0.73979 0.76698 1.93591 1.32726 1.81207 1.87237 1.93604 1.78730 1.72191 1.49947 1.30557 1.11866 1.06932 1.19800 0.83542 1.21390 1.02075 0.96467 0.94159 1.21486 1.02276 0.95469 0.95232 1.22367 0.96330 0.93328 0.96301 1.61727 1.58729 1.01245 1.00805 1.21710 0.93056 0.90918 0.99425 0.87807 1.22699 0.95860 1.04514 1.02595 1.19950 0.82211 0.81966 0.86022 1.90628 1.32988 1.64680 1.51570 1.48119 1.42590 1.14483 1.28282 1.21793 0.91647 0.99076 0.93796 1.19277 0.93788 0.92392 0.81779 1.21474 1.10082 1.29145 0.95608 0.92398 1.24939 0.97715 0.96699 0.94803 1.69941 1.40154 1.42086 1.01316 0.86440 0.83017 0.79316 0.78636 1.19778 1.21010 1.20884 1.21753 0.97125 0.92639 0.94532 0.92064 0.89952 0.91144 0.74915 0.90460 0.90512 0.90402 0.90964 0.87797 0.94880 0.91600 0.91984 0.89833 0.93479 0.90780 0.92375 0.95045 0.93875 0.92795 0.93166 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.40 11.08 59.85 0.66 1.06 16 2 N -1.12 -7.10 5.74 -16.63 -0.10 -7.20 16 3 S 2.61 24.93 4.90 -107.50 -0.53 24.41 16 4 O -0.96 -11.61 17.98 -57.54 -1.03 -12.64 16 5 O -0.96 -12.31 17.64 -57.54 -1.01 -13.33 16 6 C -0.58 -5.39 2.92 -26.65 -0.08 -5.47 16 7 H 0.15 1.25 8.06 -51.92 -0.42 0.83 16 8 C -0.10 -0.87 5.14 -26.61 -0.14 -1.00 16 9 C -0.11 -1.14 6.09 -26.65 -0.16 -1.30 16 10 C 0.04 0.60 4.35 -3.83 -0.02 0.58 16 11 N -0.50 -7.13 4.34 -228.08 -0.99 -8.12 16 12 C 0.06 0.91 1.92 -68.86 -0.13 0.77 16 13 H 0.10 1.42 7.24 -51.93 -0.38 1.04 16 14 C -0.20 -2.36 8.08 37.16 0.30 -2.06 16 15 C 0.51 10.37 6.75 -10.98 -0.07 10.29 16 16 O -0.52 -12.69 13.92 5.56 0.08 -12.61 16 17 N -0.60 -12.43 2.86 -182.95 -0.52 -12.95 16 18 C 0.08 1.24 8.80 59.85 0.53 1.76 16 19 C 0.25 6.37 5.16 -5.20 -0.03 6.34 16 20 C -0.52 -14.81 9.39 -34.45 -0.32 -15.13 16 21 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 22 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 23 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 24 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 25 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 28 C 0.07 0.79 4.43 -3.84 -0.02 0.77 16 29 H 0.06 0.24 8.06 -51.93 -0.42 -0.18 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.41 7.91 -51.92 -0.41 -0.01 16 32 H 0.42 1.91 8.92 -34.47 -0.31 1.60 16 33 H 0.08 0.46 7.93 -51.93 -0.41 0.05 16 34 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.10 1.76 5.80 -51.93 -0.30 1.46 16 38 H 0.03 0.40 6.58 -51.93 -0.34 0.06 16 39 H 0.07 0.82 6.46 -51.92 -0.34 0.49 16 40 H 0.06 0.62 6.82 -51.93 -0.35 0.27 16 41 H 0.08 0.92 4.53 -51.93 -0.24 0.69 16 42 H 0.05 0.61 6.95 -51.93 -0.36 0.25 16 43 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 44 H 0.06 0.73 6.01 -51.93 -0.31 0.42 16 45 H 0.03 0.82 8.07 -51.92 -0.42 0.40 16 46 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 47 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 48 H 0.05 0.52 6.88 -51.93 -0.36 0.16 16 49 H 0.09 0.93 8.01 -51.93 -0.42 0.51 16 LS Contribution 389.48 15.07 5.87 5.87 Total: -1.00 -37.71 389.48 -9.91 -47.62 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -7.81 Total: -0.37 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 0.43 Total: -1.76 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -0.87 Total: -54.07 kcal Atomic # 8 Polarization: -36.61 SS G_CDS: -1.97 Total: -38.58 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 24.93 SS G_CDS: -0.53 Total: 24.41 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.71 -9.91 -47.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365276533.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.111 kcal (2) G-P(sol) polarization free energy of solvation -37.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds