Wall clock time and date at job start Wed Apr 1 2020 05:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 S 1.65599 * 120.00179 * 2 1 4 4 O 1.42100 * 104.27406 * 178.73495 * 3 2 1 5 5 O 1.42097 * 104.27790 * 50.87723 * 3 2 1 6 6 C 1.81396 * 104.45030 * 294.80598 * 3 2 1 7 7 H 1.09008 * 109.53430 * 61.92765 * 6 3 2 8 8 C 1.53124 * 109.50713 * 301.83461 * 6 3 2 9 9 C 1.53115 * 109.16440 * 182.40096 * 8 6 3 10 10 C 1.53040 * 109.27571 * 57.65518 * 9 8 6 11 11 N 1.46851 * 109.52128 * 300.81929 * 10 9 8 12 12 C 1.46905 * 110.99748 * 185.83950 * 11 10 9 13 13 H 1.08997 * 109.47068 * 186.04870 * 12 11 10 14 14 C 1.52997 * 109.47237 * 306.04684 * 12 11 10 15 15 C 1.50704 * 109.46926 * 66.04704 * 12 11 10 16 16 O 1.21272 * 119.99969 * 359.97438 * 15 12 11 17 17 N 1.34778 * 119.99952 * 180.02562 * 15 12 11 18 18 C 1.46507 * 119.99837 * 359.97438 * 17 15 12 19 19 C 1.46495 * 120.00100 * 180.02562 * 17 15 12 20 20 C 1.50688 * 109.47448 * 89.99692 * 19 17 15 21 21 H 1.08005 * 120.00100 * 0.02562 * 20 19 17 22 22 C 1.37877 * 120.00444 * 179.97438 * 20 19 17 23 23 N 1.31520 * 119.99779 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00473 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46792 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.47239 * 119.99858 * 24 22 20 27 27 H 1.48500 * 109.47314 * 239.99913 * 24 22 20 28 28 C 1.46844 * 111.20017 * 61.74526 * 11 10 9 29 29 H 1.08997 * 109.46924 * 64.93540 * 1 2 3 30 30 H 1.08993 * 109.47311 * 184.94232 * 1 2 3 31 31 H 1.09008 * 109.46823 * 304.93869 * 1 2 3 32 32 H 0.96999 * 119.99605 * 179.97438 * 2 1 3 33 33 H 1.09004 * 109.51635 * 62.49702 * 8 6 3 34 34 H 1.08995 * 109.51915 * 302.31115 * 8 6 3 35 35 H 1.09001 * 109.50374 * 297.71512 * 9 8 6 36 36 H 1.08997 * 109.50093 * 177.59200 * 9 8 6 37 37 H 1.08997 * 109.45813 * 180.80240 * 10 9 8 38 38 H 1.09000 * 109.45305 * 60.82988 * 10 9 8 39 39 H 1.09008 * 109.47189 * 59.99677 * 14 12 11 40 40 H 1.09005 * 109.47229 * 300.00412 * 14 12 11 41 41 H 1.08999 * 109.47457 * 180.02562 * 14 12 11 42 42 H 1.09007 * 109.46505 * 90.00017 * 18 17 15 43 43 H 1.08997 * 109.47241 * 210.00316 * 18 17 15 44 44 H 1.08997 * 109.47087 * 330.00796 * 18 17 15 45 45 H 1.09008 * 109.46775 * 209.99830 * 19 17 15 46 46 H 1.09002 * 109.47069 * 329.99365 * 19 17 15 47 47 H 0.96993 * 120.00373 * 179.97438 * 23 22 20 48 48 H 1.08999 * 109.46455 * 58.26894 * 28 11 10 49 49 H 1.08995 * 109.46199 * 178.23994 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2931 1.4341 0.0000 4 8 3.6606 1.0491 0.0304 5 8 1.7158 2.1721 1.0683 6 6 1.8812 2.1946 -1.5945 7 1 0.8080 2.3787 -1.6441 8 6 2.2914 1.2538 -2.7309 9 6 1.9955 1.9282 -4.0733 10 6 2.7452 3.2605 -4.1455 11 7 2.3172 4.1249 -3.0382 12 6 2.9126 5.4629 -3.1545 13 1 2.6669 6.0481 -2.2684 14 6 4.4324 5.3360 -3.2766 15 6 2.3659 6.1512 -4.3787 16 8 1.5602 5.5830 -5.0848 17 7 2.7733 7.3979 -4.6892 18 6 3.7470 8.0840 -3.8363 19 6 2.2415 8.0672 -5.8788 20 6 0.9996 8.8365 -5.5095 21 1 0.6422 8.8281 -4.4903 22 6 0.3199 9.5520 -6.4723 23 7 0.7552 9.5627 -7.7133 24 14 -1.2201 10.5051 -6.0146 25 1 -1.4973 10.3316 -4.5661 26 1 -1.0166 11.9461 -6.3100 27 1 -2.3704 9.9958 -6.8037 28 6 2.6341 3.5192 -1.7385 29 1 -0.3633 0.4353 -0.9309 30 1 -0.3633 -1.0238 0.0885 31 1 -0.3633 0.5886 0.8425 32 1 1.9500 -0.8401 0.0004 33 1 1.7253 0.3252 -2.6571 34 1 3.3574 1.0384 -2.6585 35 1 0.9242 2.1082 -4.1618 36 1 2.3249 1.2809 -4.8861 37 1 2.5253 3.7499 -5.0942 38 1 3.8172 3.0783 -4.0706 39 1 4.6781 4.7506 -4.1628 40 1 4.8277 4.8380 -2.3912 41 1 4.8742 6.3287 -3.3625 42 1 4.7555 7.8636 -4.1865 43 1 3.5741 9.1593 -3.8798 44 1 3.6361 7.7395 -2.8082 45 1 2.9900 8.7538 -6.2745 46 1 1.9958 7.3222 -6.6356 47 1 0.2769 10.0657 -8.3908 48 1 3.7067 3.3359 -1.6751 49 1 2.3336 4.1965 -0.9392 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000365276533.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:39 Heat of formation + Delta-G solvation = -119.104280 kcal Electronic energy + Delta-G solvation = -30326.225122 eV Core-core repulsion = 26221.824450 eV Total energy + Delta-G solvation = -4104.400672 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.42247 -39.49740 -38.24534 -37.10034 -36.59348 -36.04258 -35.46620 -34.60174 -32.16069 -31.20471 -29.29934 -27.63702 -26.82385 -26.23565 -25.18388 -24.68709 -23.23137 -21.11009 -20.17263 -19.93979 -18.76228 -18.68602 -18.00949 -17.81664 -17.20802 -17.07730 -16.64077 -16.41024 -16.03498 -15.71315 -15.63957 -15.37615 -15.17881 -14.80808 -14.43186 -14.34071 -14.19987 -14.03417 -13.82007 -13.73287 -13.50048 -13.32250 -13.27087 -13.24722 -13.15794 -13.02668 -12.82031 -12.64614 -12.53127 -12.46706 -12.36182 -12.16825 -12.07752 -11.78069 -11.66750 -11.55643 -11.29920 -10.65192 -10.47276 -10.31972 -9.42958 -9.23319 -8.22703 -6.37277 -0.80246 1.35804 1.38074 1.50048 1.74149 1.87201 2.20926 2.39732 2.68528 2.98149 3.06728 3.11666 3.35376 3.59961 3.65587 3.95444 4.01135 4.07448 4.13251 4.18905 4.25445 4.35041 4.39322 4.53531 4.58863 4.62121 4.67584 4.69737 4.72630 4.80035 4.82556 4.91740 4.93099 4.99444 5.01952 5.05807 5.12666 5.21419 5.22958 5.35769 5.57027 5.83514 5.94223 6.05939 6.06903 6.14161 6.71122 6.82114 7.29118 7.53322 8.84308 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017355 B = 0.002623 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.009199 B =10672.520385 C =11071.497203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -1.112 6.112 3 S 2.636 3.364 4 O -0.983 6.983 5 O -0.991 6.991 6 C -0.577 4.577 7 H 0.154 0.846 8 C -0.099 4.099 9 C -0.104 4.104 10 C 0.044 3.956 11 N -0.521 5.521 12 C 0.070 3.930 13 H 0.122 0.878 14 C -0.191 4.191 15 C 0.503 3.497 16 O -0.575 6.575 17 N -0.610 5.610 18 C 0.075 3.925 19 C 0.262 3.738 20 C -0.540 4.540 21 H 0.051 0.949 22 C 0.007 3.993 23 N -0.929 5.929 24 Si 0.967 3.033 25 H -0.268 1.268 26 H -0.269 1.269 27 H -0.282 1.282 28 C 0.060 3.940 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.059 0.941 32 H 0.428 0.572 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.055 0.945 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.092 0.908 45 H 0.023 0.977 46 H -0.003 1.003 47 H 0.267 0.733 48 H 0.064 0.936 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.938 -20.072 15.928 26.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.874 5.874 3 S 2.728 3.272 4 O -0.973 6.973 5 O -0.980 6.980 6 C -0.687 4.687 7 H 0.171 0.829 8 C -0.138 4.138 9 C -0.142 4.142 10 C -0.084 4.084 11 N -0.246 5.246 12 C -0.042 4.042 13 H 0.139 0.861 14 C -0.250 4.250 15 C 0.291 3.709 16 O -0.455 6.455 17 N -0.342 5.342 18 C -0.067 4.067 19 C 0.141 3.859 20 C -0.579 4.579 21 H 0.070 0.930 22 C -0.192 4.192 23 N -0.569 5.569 24 Si 0.792 3.208 25 H -0.192 1.192 26 H -0.194 1.194 27 H -0.208 1.208 28 C -0.069 4.069 29 H 0.092 0.908 30 H 0.126 0.874 31 H 0.078 0.922 32 H 0.264 0.736 33 H 0.126 0.874 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.111 0.889 45 H 0.041 0.959 46 H 0.015 0.985 47 H 0.076 0.924 48 H 0.082 0.918 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.408 -19.758 16.087 26.046 hybrid contribution -0.326 0.546 -1.026 1.207 sum 5.082 -19.212 15.061 24.935 Atomic orbital electron populations 1.21777 0.77421 1.06042 1.02441 1.55024 1.16712 1.23758 1.91894 1.04205 0.72918 0.74032 0.76058 1.93551 1.34522 1.81690 1.87557 1.93562 1.79238 1.73547 1.51685 1.30525 1.12142 1.06194 1.19845 0.82862 1.21438 1.03127 0.97153 0.92050 1.21461 1.00872 0.94499 0.97417 1.22286 0.97545 0.94148 0.94376 1.61658 1.59558 1.01159 1.02202 1.21637 0.94742 0.91254 0.96566 0.86077 1.22666 0.93380 1.05428 1.03487 1.21009 0.81321 0.81479 0.87099 1.90598 1.35388 1.65834 1.53651 1.48121 1.43475 1.15052 1.27563 1.22103 0.91550 0.98259 0.94777 1.18715 0.93235 0.90849 0.83150 1.21728 1.11146 1.29594 0.95389 0.93038 1.25848 1.00970 0.97666 0.94675 1.70054 1.41628 1.42874 1.02336 0.85374 0.78666 0.78384 0.78415 1.19228 1.19392 1.20752 1.21925 0.98370 0.93673 0.92965 0.90813 0.87402 0.92204 0.73612 0.87413 0.89765 0.92011 0.89557 0.92089 0.93498 0.92546 0.89193 0.88732 0.90679 0.91614 0.88943 0.95897 0.98464 0.92423 0.91810 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.50 11.08 127.77 1.42 1.92 16 2 N -1.11 -11.15 5.74 -206.53 -1.19 -12.33 16 3 S 2.64 44.87 4.90 -56.49 -0.28 44.60 16 4 O -0.98 -21.75 17.98 -127.65 -2.29 -24.04 16 5 O -0.99 -24.22 17.64 -127.65 -2.25 -26.47 16 6 C -0.58 -9.45 2.92 30.65 0.09 -9.36 16 7 H 0.15 2.31 8.06 -2.39 -0.02 2.30 16 8 C -0.10 -1.43 5.14 30.67 0.16 -1.27 16 9 C -0.10 -2.14 6.09 30.65 0.19 -1.95 16 10 C 0.04 1.19 4.35 86.33 0.38 1.57 16 11 N -0.52 -14.42 4.34 -875.51 -3.80 -18.22 16 12 C 0.07 2.00 1.92 44.17 0.08 2.09 16 13 H 0.12 3.03 7.24 -2.39 -0.02 3.01 16 14 C -0.19 -4.11 8.08 71.98 0.58 -3.53 16 15 C 0.50 20.85 6.75 87.66 0.59 21.44 16 16 O -0.58 -29.60 13.92 -3.00 -0.04 -29.64 16 17 N -0.61 -25.72 2.86 -851.14 -2.43 -28.15 16 18 C 0.08 2.19 8.80 127.77 1.12 3.32 16 19 C 0.26 14.20 5.16 85.63 0.44 14.64 16 20 C -0.54 -31.41 9.39 25.60 0.24 -31.17 16 21 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 22 C 0.01 0.42 5.46 84.65 0.46 0.88 16 23 N -0.93 -56.51 13.29 21.45 0.28 -56.23 16 24 Si 0.97 45.37 29.54 68.60 2.03 47.40 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 28 C 0.06 1.23 4.43 86.33 0.38 1.61 16 29 H 0.07 0.37 8.06 -2.39 -0.02 0.35 16 30 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.06 0.59 7.91 -2.38 -0.02 0.57 16 32 H 0.43 2.66 8.92 -96.75 -0.86 1.79 16 33 H 0.11 0.90 7.93 -2.38 -0.02 0.89 16 34 H 0.08 1.14 8.09 -2.39 -0.02 1.12 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 36 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.06 2.19 5.80 -2.39 -0.01 2.18 16 38 H 0.05 1.11 6.58 -2.39 -0.02 1.09 16 39 H 0.06 1.33 6.46 -2.38 -0.02 1.32 16 40 H 0.09 1.47 6.82 -2.38 -0.02 1.46 16 41 H 0.09 1.81 4.53 -2.39 -0.01 1.80 16 42 H 0.07 1.78 6.95 -2.38 -0.02 1.77 16 43 H 0.07 2.03 8.07 -2.39 -0.02 2.02 16 44 H 0.09 2.06 6.01 -2.39 -0.01 2.04 16 45 H 0.02 1.26 8.07 -2.38 -0.02 1.24 16 46 H 0.00 -0.17 7.42 -2.39 -0.02 -0.19 16 47 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 48 H 0.06 1.14 6.88 -2.39 -0.02 1.12 16 49 H 0.10 1.80 8.01 -2.39 -0.02 1.78 16 Total: -1.00 -86.13 389.48 -3.74 -89.87 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.10 Total: 13.05 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 6.13 Total: 0.16 kcal Atomic # 7 Polarization: -107.80 SS G_CDS: -7.13 Total: -114.93 kcal Atomic # 8 Polarization: -75.56 SS G_CDS: -4.59 Total: -80.15 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Atomic # 16 Polarization: 44.87 SS G_CDS: -0.28 Total: 44.60 kcal Total: -86.13 -3.74 -89.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365276533.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.234 kcal (2) G-P(sol) polarization free energy of solvation -86.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds