Wall clock time and date at job start Wed Apr 1 2020 05:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08998 * 109.46636 * 2 1 4 4 C 1.50694 * 109.46808 * 240.00628 * 2 1 3 5 5 H 1.08008 * 119.99719 * 239.99618 * 4 2 1 6 6 C 1.37874 * 120.00566 * 59.99577 * 4 2 1 7 7 N 1.31510 * 119.99816 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00174 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47111 * 90.00185 * 8 6 4 10 10 H 1.48497 * 109.46946 * 210.00046 * 8 6 4 11 11 H 1.48499 * 109.47032 * 330.00084 * 8 6 4 12 12 N 1.46494 * 109.47200 * 120.00473 * 2 1 3 13 13 C 1.46493 * 120.00444 * 60.27260 * 12 2 1 14 14 S 1.65608 * 119.99583 * 239.99941 * 12 2 1 15 15 O 1.42100 * 106.40059 * 203.54152 * 14 12 2 16 16 O 1.42096 * 106.40050 * 336.46185 * 14 12 2 17 17 N 1.65599 * 107.21718 * 90.00246 * 14 12 2 18 18 C 1.47083 * 120.87957 * 269.71773 * 17 14 12 19 19 C 1.53699 * 108.27495 * 128.75578 * 18 17 14 20 20 N 1.46904 * 109.25783 * 54.08377 * 19 18 17 21 21 C 1.46891 * 110.99848 * 172.60477 * 20 19 18 22 22 H 1.09005 * 110.80695 * 67.93154 * 21 20 19 23 23 C 1.54810 * 110.90981 * 304.30145 * 21 20 19 24 24 C 1.54106 * 104.18842 * 220.91987 * 23 21 20 25 25 O 1.43748 * 107.29427 * 357.97457 * 24 23 21 26 26 C 1.44380 * 106.97432 * 26.50692 * 25 24 23 27 27 C 1.46892 * 111.26793 * 296.75799 * 20 19 18 28 28 C 1.47082 * 120.88437 * 89.99852 * 17 14 12 29 29 H 1.08998 * 109.46636 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46705 * 299.99354 * 1 2 3 31 31 H 1.08996 * 109.47197 * 60.00061 * 1 2 3 32 32 H 0.97007 * 120.00492 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47297 * 269.72722 * 13 12 2 34 34 H 1.09002 * 109.47192 * 29.72648 * 13 12 2 35 35 H 1.08996 * 109.47342 * 149.72358 * 13 12 2 36 36 H 1.08997 * 109.63211 * 248.52671 * 18 17 14 37 37 H 1.09006 * 109.62825 * 9.10657 * 18 17 14 38 38 H 1.08999 * 109.64758 * 294.08072 * 19 18 17 39 39 H 1.09006 * 109.44062 * 173.96171 * 19 18 17 40 40 H 1.08989 * 110.48898 * 339.59658 * 23 21 20 41 41 H 1.09002 * 110.48912 * 102.25087 * 23 21 20 42 42 H 1.08997 * 109.87333 * 117.39292 * 24 23 21 43 43 H 1.08995 * 109.88338 * 238.54528 * 24 23 21 44 44 H 1.08998 * 110.61835 * 201.43952 * 26 25 24 45 45 H 1.09001 * 110.61964 * 78.44567 * 26 25 24 46 46 H 1.09002 * 109.49071 * 303.14309 * 27 20 19 47 47 H 1.08994 * 109.49445 * 183.06620 * 27 20 19 48 48 H 1.09001 * 109.62307 * 350.89699 * 28 17 14 49 49 H 1.08997 * 109.62726 * 111.47389 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3213 -1.1202 -4.0081 9 1 1.3426 -2.1615 -4.4120 10 1 2.4864 -0.1412 -5.1123 11 1 3.6292 -1.7582 -3.7124 12 7 2.0184 -0.6907 1.1961 13 6 1.6695 -2.0949 1.4248 14 16 2.9706 0.1142 2.2861 15 8 3.7120 -0.8789 2.9813 16 8 3.5794 1.1829 1.5747 17 7 1.9609 0.8089 3.3998 18 6 1.4385 2.1693 3.2001 19 6 -0.0880 2.1298 3.3744 20 7 -0.4119 1.5253 4.6735 21 6 -1.8495 1.6268 4.9576 22 1 -2.4241 1.0001 4.2755 23 6 -2.3239 3.0987 4.8879 24 6 -3.2943 3.2395 6.0767 25 8 -3.3851 1.9518 6.7091 26 6 -2.1490 1.2586 6.4332 27 6 0.0406 0.1293 4.7392 28 6 1.5675 0.0843 4.6178 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 0.7094 1.1620 -3.4843 33 1 0.7442 -2.1507 1.9982 34 1 1.5339 -2.5964 0.4666 35 1 2.4708 -2.5826 1.9799 36 1 1.8771 2.8418 3.9372 37 1 1.6849 2.5122 2.1951 38 1 -0.5329 1.5360 2.5759 39 1 -0.4838 3.1448 3.3368 40 1 -1.4791 3.7777 5.0026 41 1 -2.8422 3.2884 3.9479 42 1 -2.9092 3.9736 6.7844 43 1 -4.2769 3.5468 5.7188 44 1 -2.2804 0.1820 6.5411 45 1 -1.3539 1.6167 7.0871 46 1 -0.4061 -0.4366 3.9217 47 1 -0.2616 -0.3066 5.6914 48 1 1.8992 -0.9518 4.5506 49 1 2.0182 0.5603 5.4886 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000369223600.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:10 Heat of formation + Delta-G solvation = -122.755721 kcal Electronic energy + Delta-G solvation = -31327.272007 eV Core-core repulsion = 27222.712996 eV Total energy + Delta-G solvation = -4104.559011 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.86905 -39.14707 -38.42125 -37.89077 -36.91392 -35.62599 -34.53439 -32.41085 -31.69611 -30.92480 -29.76645 -27.27082 -27.04905 -26.64203 -25.07547 -23.10598 -22.72811 -21.99436 -21.21640 -19.83371 -19.01531 -18.64559 -18.15600 -17.49643 -17.29060 -17.24349 -16.61663 -16.29640 -15.83607 -15.73288 -15.46338 -15.19198 -15.13881 -14.92322 -14.87442 -14.36058 -14.14080 -13.84316 -13.62374 -13.59187 -13.46872 -13.19171 -13.04044 -13.02732 -12.97869 -12.72355 -12.69304 -12.64690 -12.37062 -12.31189 -12.16780 -12.08155 -11.97852 -11.85569 -11.69422 -11.62649 -11.19339 -10.63608 -10.51947 -10.16076 -9.65951 -9.34187 -8.13481 -6.26703 -0.38922 1.40430 1.42972 1.52017 1.97775 2.40490 2.51494 2.67813 3.12984 3.14937 3.32229 3.54294 3.66819 3.88404 4.05260 4.08799 4.10425 4.26005 4.28529 4.30438 4.31402 4.35774 4.48795 4.69233 4.70836 4.70920 4.74434 4.78612 4.84504 4.87522 4.90158 4.95490 4.96765 5.02838 5.04404 5.10813 5.13537 5.17753 5.23334 5.50049 5.59184 5.76582 5.82610 5.86719 5.96210 6.11386 6.12917 6.28342 6.80360 7.42109 8.90397 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014660 B = 0.003528 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.524220 B = 7934.118248 C = 8929.684486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.277 3.723 3 H 0.024 0.976 4 C -0.541 4.541 5 H 0.055 0.945 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.953 3.047 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.276 1.276 12 N -0.997 5.997 13 C 0.095 3.905 14 S 2.789 3.211 15 O -1.006 7.006 16 O -1.013 7.013 17 N -1.005 6.005 18 C 0.127 3.873 19 C 0.045 3.955 20 N -0.519 5.519 21 C 0.049 3.951 22 H 0.050 0.950 23 C -0.149 4.149 24 C 0.048 3.952 25 O -0.401 6.401 26 C 0.060 3.940 27 C 0.042 3.958 28 C 0.125 3.875 29 H 0.036 0.964 30 H 0.032 0.968 31 H 0.065 0.935 32 H 0.264 0.736 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.031 0.969 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.099 0.901 45 H 0.077 0.923 46 H 0.034 0.966 47 H 0.111 0.889 48 H 0.092 0.908 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.140 2.094 17.918 19.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.173 3.827 3 H 0.042 0.958 4 C -0.581 4.581 5 H 0.073 0.927 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.779 3.221 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.201 1.201 12 N -0.839 5.839 13 C -0.051 4.051 14 S 2.800 3.200 15 O -0.990 6.990 16 O -0.997 6.997 17 N -0.847 5.847 18 C 0.001 3.999 19 C -0.084 4.084 20 N -0.244 5.244 21 C -0.060 4.060 22 H 0.068 0.932 23 C -0.187 4.187 24 C -0.028 4.028 25 O -0.320 6.320 26 C -0.017 4.017 27 C -0.088 4.088 28 C 0.000 4.000 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.049 0.951 39 H 0.122 0.878 40 H 0.111 0.889 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.109 0.891 44 H 0.117 0.883 45 H 0.095 0.905 46 H 0.053 0.947 47 H 0.129 0.871 48 H 0.111 0.889 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.180 2.437 18.264 19.775 hybrid contribution -0.205 -0.693 -2.118 2.238 sum -7.386 1.744 16.146 17.840 Atomic orbital electron populations 1.21876 0.96899 0.99786 1.00135 1.18339 0.92060 0.91226 0.81067 0.95820 1.21657 1.31729 1.13095 0.91581 0.92652 1.25593 0.95186 0.95679 1.01517 1.69959 1.37200 1.23505 1.24340 0.85634 0.78763 0.78487 0.79219 1.19535 1.20861 1.20055 1.57637 1.69994 1.20936 1.35315 1.21422 1.00366 0.80744 1.02537 1.01458 0.73928 0.72335 0.72286 1.93489 1.69991 1.60870 1.74626 1.93534 1.75416 1.57240 1.73554 1.58173 1.67071 1.25028 1.34408 1.21639 0.93843 0.82195 1.02173 1.22574 0.95041 1.01164 0.89664 1.61976 1.14321 1.17566 1.30573 1.23201 0.87864 0.97320 0.97584 0.93228 1.23021 1.00100 0.95929 0.99640 1.23229 1.00462 0.85587 0.93563 1.88856 1.37894 1.29589 1.75681 1.23579 0.86524 0.98022 0.93528 1.22550 0.94828 0.88714 1.02663 1.21672 0.94914 0.96959 0.86484 0.94487 0.94943 0.91610 0.92625 0.91795 0.91131 0.91014 0.88910 0.90926 0.95112 0.87817 0.88883 0.90100 0.91277 0.89073 0.88254 0.90497 0.94728 0.87101 0.88947 0.89045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.58 8.98 71.99 0.65 -4.94 16 2 C 0.28 13.39 2.62 44.25 0.12 13.51 16 3 H 0.02 1.31 6.91 -2.39 -0.02 1.29 16 4 C -0.54 -29.07 7.98 25.60 0.20 -28.86 16 5 H 0.06 2.97 7.32 -2.91 -0.02 2.95 16 6 C 0.02 1.10 5.30 84.65 0.45 1.55 16 7 N -0.91 -50.34 11.32 21.45 0.24 -50.10 16 8 Si 0.95 42.97 29.54 68.60 2.03 44.99 16 9 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 12 N -1.00 -40.44 3.12 -520.48 -1.62 -42.06 16 13 C 0.09 3.21 9.66 127.77 1.23 4.45 16 14 S 2.79 108.45 6.11 -56.49 -0.35 108.10 16 15 O -1.01 -40.35 15.51 -128.00 -1.99 -42.33 16 16 O -1.01 -47.90 15.47 -128.00 -1.98 -49.88 16 17 N -1.01 -29.03 3.38 -511.32 -1.73 -30.76 16 18 C 0.13 3.36 6.56 86.50 0.57 3.93 16 19 C 0.04 0.99 5.40 86.54 0.47 1.46 16 20 N -0.52 -9.66 4.48 -861.51 -3.86 -13.52 16 21 C 0.05 0.83 2.81 46.22 0.13 0.96 16 22 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 23 C -0.15 -2.17 5.42 31.59 0.17 -2.00 16 24 C 0.05 0.70 7.70 72.36 0.56 1.26 16 25 O -0.40 -7.73 11.52 -148.98 -1.72 -9.45 16 26 C 0.06 0.94 6.39 72.67 0.46 1.40 16 27 C 0.04 0.76 5.51 86.38 0.48 1.24 16 28 C 0.12 2.71 6.53 86.35 0.56 3.27 16 29 H 0.04 1.53 7.68 -2.39 -0.02 1.52 16 30 H 0.03 1.22 6.55 -2.39 -0.02 1.20 16 31 H 0.07 3.25 6.07 -2.39 -0.01 3.24 16 32 H 0.26 13.91 8.31 -92.70 -0.77 13.14 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.07 2.56 7.00 -2.39 -0.02 2.54 16 35 H 0.07 2.27 7.02 -2.39 -0.02 2.25 16 36 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.07 2.28 7.21 -2.38 -0.02 2.26 16 38 H 0.03 0.81 6.55 -2.39 -0.02 0.80 16 39 H 0.10 1.93 6.40 -2.38 -0.02 1.91 16 40 H 0.09 1.30 7.36 -2.39 -0.02 1.28 16 41 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.10 1.33 7.88 -2.39 -0.02 1.31 16 45 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.11 1.44 7.03 -2.39 -0.02 1.42 16 48 H 0.09 1.98 7.22 -2.39 -0.02 1.97 16 49 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -67.86 382.44 -3.99 -71.85 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.94 Total: 15.94 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 6.05 Total: -2.78 kcal Atomic # 7 Polarization: -129.47 SS G_CDS: -6.97 Total: -136.44 kcal Atomic # 8 Polarization: -95.98 SS G_CDS: -5.68 Total: -101.66 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: 108.45 SS G_CDS: -0.35 Total: 108.10 kcal Total: -67.86 -3.99 -71.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369223600.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.906 kcal (2) G-P(sol) polarization free energy of solvation -67.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds