Wall clock time and date at job start Wed Apr 1 2020 05:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47547 * 2 1 4 4 C 1.50703 * 109.47085 * 240.00312 * 2 1 3 5 5 H 1.07996 * 120.00426 * 245.70548 * 4 2 1 6 6 C 1.37881 * 119.99772 * 65.70676 * 4 2 1 7 7 N 1.31513 * 119.99635 * 196.44192 * 6 4 2 8 8 Si 1.86794 * 120.00161 * 16.17256 * 6 4 2 9 9 H 1.48500 * 109.47262 * 180.27315 * 8 6 4 10 10 H 1.48499 * 109.47384 * 300.27388 * 8 6 4 11 11 H 1.48508 * 109.47304 * 60.27407 * 8 6 4 12 12 N 1.46504 * 109.47291 * 120.00472 * 2 1 3 13 13 C 1.46496 * 119.99706 * 59.99870 * 12 2 1 14 14 S 1.65597 * 119.99970 * 240.00051 * 12 2 1 15 15 O 1.42100 * 106.39853 * 203.54067 * 14 12 2 16 16 O 1.42097 * 106.40275 * 336.45575 * 14 12 2 17 17 N 1.65592 * 107.21705 * 89.99847 * 14 12 2 18 18 C 1.47086 * 120.88088 * 269.71658 * 17 14 12 19 19 C 1.53703 * 108.27146 * 128.75941 * 18 17 14 20 20 N 1.46892 * 109.25919 * 54.08369 * 19 18 17 21 21 C 1.46900 * 111.00032 * 172.60678 * 20 19 18 22 22 H 1.08997 * 110.75398 * 68.21673 * 21 20 19 23 23 C 1.55308 * 110.84832 * 191.91738 * 21 20 19 24 24 C 1.54944 * 100.94111 * 152.32394 * 23 21 20 25 25 O 1.43644 * 105.13720 * 323.54877 * 24 23 21 26 26 C 1.43239 * 109.96825 * 24.43469 * 25 24 23 27 27 C 1.46900 * 111.27239 * 296.75521 * 20 19 18 28 28 C 1.47082 * 120.88231 * 90.00142 * 17 14 12 29 29 H 1.09000 * 109.46740 * 56.98347 * 1 2 3 30 30 H 1.08997 * 109.46841 * 176.98250 * 1 2 3 31 31 H 1.09000 * 109.46609 * 296.98391 * 1 2 3 32 32 H 0.96995 * 120.00648 * 354.57448 * 7 6 4 33 33 H 1.09005 * 109.47556 * 89.99914 * 13 12 2 34 34 H 1.08997 * 109.47149 * 209.99753 * 13 12 2 35 35 H 1.09001 * 109.47408 * 330.00086 * 13 12 2 36 36 H 1.09000 * 109.62933 * 248.52393 * 18 17 14 37 37 H 1.08996 * 109.62657 * 9.11002 * 18 17 14 38 38 H 1.09004 * 109.64846 * 294.07602 * 19 18 17 39 39 H 1.09002 * 109.41422 * 173.95328 * 19 18 17 40 40 H 1.09004 * 111.11830 * 270.23645 * 23 21 20 41 41 H 1.08992 * 111.12761 * 34.39950 * 23 21 20 42 42 H 1.09005 * 110.30579 * 204.63451 * 24 23 21 43 43 H 1.08997 * 110.39652 * 82.51215 * 24 23 21 44 44 H 1.09003 * 109.82609 * 238.77358 * 26 25 24 45 45 H 1.08998 * 109.90745 * 117.84814 * 26 25 24 46 46 H 1.09000 * 109.49020 * 303.14859 * 27 20 19 47 47 H 1.08993 * 109.49489 * 183.06392 * 27 20 19 48 48 H 1.08994 * 109.62528 * 350.89455 * 28 17 14 49 49 H 1.09002 * 109.63131 * 111.28152 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5751 -1.6390 -1.1342 6 6 1.7990 -0.1746 -2.4794 7 7 1.9378 -0.9225 -3.5521 8 14 1.2783 1.6115 -2.6470 9 1 1.0855 1.9383 -4.0827 10 1 0.0042 1.8265 -1.9151 11 1 2.3311 2.4898 -2.0765 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4278 14 16 2.9705 0.1140 2.2862 15 8 3.7119 -0.8792 2.9813 16 8 3.5795 1.1828 1.5749 17 7 1.9608 0.8087 3.3998 18 6 1.4385 2.1692 3.2001 19 6 -0.0881 2.1297 3.3745 20 7 -0.4119 1.5252 4.6735 21 6 -1.8496 1.6266 4.9576 22 1 -2.4230 0.9959 4.2783 23 6 -2.1472 1.2652 6.4385 24 6 -3.4323 2.0933 6.6907 25 8 -3.2452 3.3107 5.9516 26 6 -2.3234 3.0937 4.8769 27 6 0.0404 0.1291 4.7392 28 6 1.5674 0.0841 4.6178 29 1 -0.3633 0.5600 -0.8617 30 1 -0.3633 -1.0262 -0.0541 31 1 -0.3632 0.4663 0.9158 32 1 2.2798 -1.8267 -3.4721 33 1 2.4157 -2.7378 0.9714 34 1 1.6239 -2.2854 2.4999 35 1 0.6904 -2.3003 0.9844 36 1 1.8771 2.8416 3.9374 37 1 1.6849 2.5121 2.1952 38 1 -0.5330 1.5360 2.5759 39 1 -0.4834 3.1448 3.3369 40 1 -2.3390 0.1982 6.5514 41 1 -1.3370 1.5883 7.0921 42 1 -3.5408 2.3089 7.7537 43 1 -4.3075 1.5579 6.3227 44 1 -1.4702 3.7641 4.9806 45 1 -2.8183 3.2705 3.9220 46 1 -0.4062 -0.4368 3.9216 47 1 -0.2617 -0.3067 5.6914 48 1 1.8990 -0.9520 4.5506 49 1 2.0208 0.5580 5.4884 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000369223601.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:14 Heat of formation + Delta-G solvation = -95.705401 kcal Electronic energy + Delta-G solvation = -31458.301725 eV Core-core repulsion = 27354.915704 eV Total energy + Delta-G solvation = -4103.386021 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.20269 -38.35606 -36.92569 -36.41232 -35.39564 -34.76226 -32.60473 -31.61151 -31.06844 -29.90057 -29.09431 -25.97725 -25.75168 -24.69456 -24.25606 -22.26066 -21.52832 -20.85471 -20.24414 -18.64810 -17.73468 -17.57267 -17.05863 -16.83916 -16.56634 -15.90252 -15.30156 -15.15991 -14.83943 -14.79990 -14.37125 -14.17626 -14.06149 -13.75380 -13.44260 -13.34813 -13.06833 -12.68830 -12.63343 -12.22082 -12.16796 -12.10410 -11.92127 -11.82117 -11.69906 -11.68401 -11.60889 -11.45271 -11.31391 -11.29962 -10.99903 -10.94987 -10.75891 -10.48439 -10.01460 -9.84748 -9.78684 -9.22136 -9.14779 -8.56588 -8.45255 -8.11930 -6.51946 -4.16097 0.96086 3.18929 3.27174 3.37324 3.42714 3.54524 3.65256 3.90419 4.05670 4.41088 4.53928 4.56563 4.59832 4.70552 4.83548 4.90714 4.94799 5.04354 5.07464 5.16987 5.20541 5.29001 5.34176 5.37607 5.39884 5.44361 5.48049 5.52346 5.56317 5.71038 5.73721 5.89829 5.94151 6.00180 6.14136 6.27604 6.31779 6.43810 6.46617 6.57878 6.63412 6.72397 6.76265 6.88542 7.23835 7.42256 7.90526 8.31629 8.83690 9.52877 10.86439 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013244 B = 0.003939 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.688290 B = 7106.735362 C = 8168.613661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.246 3.754 3 H 0.046 0.954 4 C -0.604 4.604 5 H 0.064 0.936 6 C 0.034 3.966 7 N -0.902 5.902 8 Si 1.034 2.966 9 H -0.282 1.282 10 H -0.271 1.271 11 H -0.275 1.275 12 N -0.984 5.984 13 C 0.114 3.886 14 S 2.775 3.225 15 O -0.989 6.989 16 O -0.971 6.971 17 N -1.014 6.014 18 C 0.130 3.870 19 C 0.033 3.967 20 N -0.522 5.522 21 C 0.048 3.952 22 H 0.059 0.941 23 C -0.147 4.147 24 C 0.052 3.948 25 O -0.383 6.383 26 C 0.057 3.943 27 C 0.042 3.958 28 C 0.131 3.869 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.023 0.977 32 H 0.268 0.732 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.050 0.950 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.059 0.941 44 H 0.083 0.917 45 H 0.068 0.932 46 H 0.044 0.956 47 H 0.084 0.916 48 H 0.090 0.910 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.796 4.117 20.189 22.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.142 3.858 3 H 0.064 0.936 4 C -0.644 4.644 5 H 0.082 0.918 6 C -0.172 4.172 7 N -0.535 5.535 8 Si 0.861 3.139 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.201 1.201 12 N -0.826 5.826 13 C -0.033 4.033 14 S 2.786 3.214 15 O -0.973 6.973 16 O -0.954 6.954 17 N -0.852 5.852 18 C 0.004 3.996 19 C -0.096 4.096 20 N -0.248 5.248 21 C -0.060 4.060 22 H 0.077 0.923 23 C -0.184 4.184 24 C -0.025 4.025 25 O -0.302 6.302 26 C -0.020 4.020 27 C -0.087 4.087 28 C 0.004 3.996 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.077 0.923 44 H 0.101 0.899 45 H 0.086 0.914 46 H 0.062 0.938 47 H 0.103 0.897 48 H 0.108 0.892 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.132 5.761 19.466 22.260 hybrid contribution -0.291 -2.063 0.346 2.112 sum -9.423 3.698 19.812 22.248 Atomic orbital electron populations 1.22615 0.98880 1.01353 0.99413 1.18957 0.90640 0.92982 0.83239 0.93641 1.22169 1.40943 1.10509 0.90741 0.91819 1.25695 0.94791 1.04784 0.91915 1.70852 1.41029 1.10448 1.31214 0.84253 0.77299 0.75732 0.76565 1.20778 1.19805 1.20074 1.57580 1.70059 1.19859 1.35098 1.21118 1.01691 0.81882 0.98592 1.02182 0.73841 0.73116 0.72309 1.93540 1.68904 1.60313 1.74519 1.93591 1.73753 1.55905 1.72200 1.58556 1.67635 1.24513 1.34533 1.21527 0.92337 0.82921 1.02861 1.22730 0.96861 1.00330 0.89713 1.61967 1.13526 1.17791 1.31530 1.23204 0.89086 0.96842 0.96911 0.92290 1.23303 0.98462 1.00833 0.95847 1.23331 0.96796 0.85360 0.96980 1.88422 1.64683 1.32729 1.44361 1.23207 0.92939 0.95472 0.90387 1.22496 0.96051 0.88554 1.01638 1.21394 0.93629 0.96944 0.87594 0.91640 0.92947 0.95799 0.92128 0.93127 0.93343 0.91136 0.90488 0.88736 0.93190 0.89467 0.90089 0.89087 0.89607 0.92251 0.89934 0.91379 0.93822 0.89721 0.89222 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 8.78 37.16 0.33 -2.88 16 2 C 0.25 5.56 2.20 -69.08 -0.15 5.40 16 3 H 0.05 1.07 5.59 -51.93 -0.29 0.78 16 4 C -0.60 -16.39 8.69 -34.44 -0.30 -16.69 16 5 H 0.06 1.87 7.75 -52.49 -0.41 1.46 16 6 C 0.03 0.96 5.36 -17.82 -0.10 0.87 16 7 N -0.90 -26.98 13.69 55.43 0.76 -26.22 16 8 Si 1.03 24.27 26.38 -169.99 -4.48 19.79 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 10 H -0.27 -5.61 5.45 56.52 0.31 -5.30 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 N -0.98 -19.49 3.12 -115.85 -0.36 -19.85 16 13 C 0.11 1.96 9.47 59.84 0.57 2.53 16 14 S 2.78 52.51 6.06 -107.50 -0.65 51.86 16 15 O -0.99 -19.96 15.99 -57.17 -0.91 -20.87 16 16 O -0.97 -21.62 15.47 -57.17 -0.88 -22.50 16 17 N -1.01 -14.31 3.38 -112.96 -0.38 -14.69 16 18 C 0.13 1.62 6.56 -3.36 -0.02 1.60 16 19 C 0.03 0.35 5.38 -3.46 -0.02 0.33 16 20 N -0.52 -5.04 4.46 -223.73 -1.00 -6.04 16 21 C 0.05 0.42 2.69 -65.76 -0.18 0.24 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 C -0.15 -1.03 5.77 -24.48 -0.14 -1.17 16 24 C 0.05 0.39 7.78 38.18 0.30 0.68 16 25 O -0.38 -3.97 11.36 -35.23 -0.40 -4.37 16 26 C 0.06 0.52 6.24 37.88 0.24 0.75 16 27 C 0.04 0.40 5.52 -3.70 -0.02 0.38 16 28 C 0.13 1.47 6.53 -3.60 -0.02 1.44 16 29 H 0.06 1.34 4.65 -51.93 -0.24 1.10 16 30 H 0.05 1.02 6.79 -51.93 -0.35 0.66 16 31 H 0.02 0.39 6.57 -51.93 -0.34 0.04 16 32 H 0.27 8.02 8.73 -40.82 -0.36 7.66 16 33 H 0.05 0.93 8.09 -51.93 -0.42 0.51 16 34 H 0.05 0.68 7.79 -51.93 -0.40 0.28 16 35 H 0.07 1.17 6.49 -51.93 -0.34 0.83 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 1.30 7.21 -51.93 -0.37 0.92 16 38 H 0.05 0.59 6.57 -51.93 -0.34 0.25 16 39 H 0.09 0.79 6.36 -51.93 -0.33 0.46 16 40 H 0.08 0.47 8.03 -51.93 -0.42 0.05 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.76 7.25 -51.93 -0.38 0.39 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.08 0.64 7.14 -51.93 -0.37 0.27 16 48 H 0.09 1.00 7.22 -51.93 -0.37 0.63 16 49 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 377.89 15.07 5.69 5.69 Total: -1.00 -33.36 377.89 -10.15 -43.52 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -8.01 Total: 0.20 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 0.48 Total: -6.51 kcal Atomic # 7 Polarization: -65.82 SS G_CDS: -0.98 Total: -66.80 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -2.20 Total: -47.75 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -4.48 Total: 19.79 kcal Atomic # 16 Polarization: 52.51 SS G_CDS: -0.65 Total: 51.86 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.36 -10.15 -43.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369223601.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.190 kcal (2) G-P(sol) polarization free energy of solvation -33.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds