Wall clock time and date at job start Wed Apr 1 2020 04:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47024 * 2 1 4 4 N 1.46494 * 109.46901 * 180.02562 * 3 2 1 5 5 C 1.45536 * 115.55327 * 90.00107 * 4 3 2 6 6 C 1.53110 * 111.83155 * 213.27675 * 5 4 3 7 7 C 1.54119 * 108.98703 * 273.89546 * 6 5 4 8 8 N 1.45507 * 108.32094 * 59.71149 * 7 6 5 9 9 S 1.65603 * 120.81767 * 212.02625 * 8 7 6 10 10 O 1.42104 * 106.39798 * 336.46154 * 9 8 7 11 11 O 1.42093 * 106.40321 * 203.54004 * 9 8 7 12 12 N 1.65595 * 107.21698 * 89.99954 * 9 8 7 13 13 C 1.46505 * 120.00176 * 270.00343 * 12 9 8 14 14 C 1.46506 * 120.00118 * 90.00351 * 12 9 8 15 15 H 1.09000 * 109.46950 * 359.97438 * 14 12 9 16 16 C 1.53003 * 109.46955 * 239.99906 * 14 12 9 17 17 C 1.50699 * 109.46911 * 119.99695 * 14 12 9 18 18 H 1.07993 * 120.00126 * 35.04973 * 17 14 12 19 19 C 1.37875 * 119.99751 * 215.04366 * 17 14 12 20 20 N 1.31514 * 120.00243 * 184.72506 * 19 17 14 21 21 Si 1.86802 * 120.00242 * 4.72822 * 19 17 14 22 22 H 1.48496 * 109.47292 * 84.81131 * 21 19 17 23 23 H 1.48494 * 109.47356 * 204.81577 * 21 19 17 24 24 H 1.48500 * 109.46883 * 324.81364 * 21 19 17 25 25 C 1.46700 * 118.36729 * 32.29747 * 8 7 6 26 26 C 1.32822 * 115.55244 * 270.01587 * 4 3 2 27 27 O 1.21284 * 118.97603 * 349.67210 * 26 4 3 28 28 H 1.09000 * 109.47048 * 299.99672 * 1 2 3 29 29 H 1.08998 * 109.47107 * 60.00242 * 1 2 3 30 30 H 1.09007 * 109.46988 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47262 * 239.99934 * 2 1 3 32 32 H 1.08998 * 109.47107 * 119.99758 * 2 1 3 33 33 H 1.09000 * 109.46941 * 60.00262 * 3 2 1 34 34 H 1.08998 * 109.46982 * 299.99835 * 3 2 1 35 35 H 1.08990 * 109.00756 * 92.67116 * 5 4 3 36 36 H 1.08998 * 108.94177 * 333.83953 * 5 4 3 37 37 H 1.09004 * 109.55043 * 154.04721 * 6 5 4 38 38 H 1.09001 * 109.55629 * 33.75442 * 6 5 4 39 39 H 1.09000 * 109.69036 * 300.00512 * 7 6 5 40 40 H 1.08996 * 109.72448 * 179.44154 * 7 6 5 41 41 H 1.09005 * 109.46733 * 270.00200 * 13 12 9 42 42 H 1.08994 * 109.46977 * 29.99319 * 13 12 9 43 43 H 1.08996 * 109.47136 * 150.00517 * 13 12 9 44 44 H 1.08998 * 109.47014 * 53.02339 * 16 14 12 45 45 H 1.09000 * 109.46602 * 293.01967 * 16 14 12 46 46 H 1.09002 * 109.46865 * 173.02028 * 16 14 12 47 47 H 0.96998 * 120.00432 * 180.02562 * 20 19 17 48 48 H 1.08998 * 109.53101 * 30.32742 * 25 8 7 49 49 H 1.09006 * 109.52956 * 150.54522 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1321 1.4427 -1.3139 6 6 5.4497 0.6629 -1.3157 7 6 6.5893 1.6027 -0.8761 8 7 6.2884 2.0924 0.4607 9 16 6.7658 3.6046 0.9377 10 8 7.8678 3.9564 0.1123 11 8 6.8360 3.5743 2.3566 12 7 5.5405 4.6497 0.5524 13 6 5.5222 5.3061 -0.7573 14 6 4.4748 4.9181 1.5212 15 1 4.6567 4.3441 2.4297 16 6 3.1269 4.5109 0.9224 17 6 4.4544 6.3884 1.8510 18 1 4.6894 7.1162 1.0885 19 6 4.1355 6.8045 3.1262 20 7 4.0266 8.0880 3.3912 21 14 3.8581 5.5451 4.4776 22 1 5.1630 5.1662 5.0766 23 1 2.9829 6.1284 5.5259 24 1 3.2078 4.3393 3.9046 25 6 5.5570 1.2111 1.3775 26 6 4.0784 1.4420 1.1975 27 8 3.3905 1.6318 2.1782 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 4.3285 2.4721 -1.6133 36 1 3.4496 0.9883 -2.0320 37 1 5.6515 0.2899 -2.3199 38 1 5.3791 -0.1745 -0.6214 39 1 6.6603 2.4424 -1.5675 40 1 7.5325 1.0565 -0.8636 41 1 6.0635 6.2503 -0.6981 42 1 5.9988 4.6597 -1.4943 43 1 4.4908 5.4966 -1.0538 44 1 3.1821 3.4808 0.5703 45 1 2.8872 5.1683 0.0867 46 1 2.3513 4.5935 1.6838 47 1 3.8026 8.3808 4.2884 48 1 5.7942 0.1717 1.1508 49 1 5.8434 1.4357 2.4050 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375698815.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:17 Heat of formation + Delta-G solvation = -89.522307 kcal Electronic energy + Delta-G solvation = -32896.228105 eV Core-core repulsion = 28793.110203 eV Total energy + Delta-G solvation = -4103.117902 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.66018 -37.27449 -36.78178 -36.28799 -36.09117 -35.33339 -33.30376 -32.40749 -31.44737 -29.86712 -28.46047 -26.00015 -25.73414 -25.59135 -25.06409 -21.87110 -21.58963 -20.60748 -19.56937 -18.62945 -17.57739 -17.41122 -16.88969 -16.55684 -16.35847 -16.13969 -15.23268 -14.92272 -14.71704 -14.67657 -14.16418 -13.90154 -13.63658 -13.51328 -13.13149 -13.00271 -12.86957 -12.49604 -12.45354 -12.39988 -12.10589 -12.05745 -11.95815 -11.82752 -11.66790 -11.55544 -11.42861 -11.37469 -11.34079 -11.16594 -10.96990 -10.84895 -10.76316 -10.51559 -10.24858 -10.04856 -9.68710 -9.27213 -8.99769 -8.67197 -8.51694 -8.04196 -6.10559 -4.10659 0.95544 2.60379 2.98301 3.30031 3.44058 3.50237 3.60712 3.93249 4.36083 4.38743 4.48469 4.61228 4.69510 4.83010 4.86845 4.92943 5.05244 5.09636 5.17450 5.23144 5.25346 5.35549 5.40561 5.50420 5.54495 5.57164 5.62771 5.69171 5.73467 5.88556 5.91609 6.00972 6.02304 6.12325 6.21294 6.38387 6.41267 6.46617 6.50568 6.61230 6.69233 7.05681 7.26376 7.51685 7.54429 7.72379 8.21630 8.49278 8.93194 9.52074 11.00889 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010486 B = 0.006383 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.645815 B = 4385.319895 C = 5811.044615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C 0.091 3.909 4 N -0.596 5.596 5 C 0.122 3.878 6 C -0.148 4.148 7 C 0.121 3.879 8 N -1.009 6.009 9 S 2.763 3.237 10 O -0.986 6.986 11 O -0.968 6.968 12 N -0.980 5.980 13 C 0.110 3.890 14 C 0.237 3.763 15 H 0.057 0.943 16 C -0.152 4.152 17 C -0.514 4.514 18 H 0.080 0.920 19 C 0.080 3.920 20 N -0.890 5.890 21 Si 0.858 3.142 22 H -0.266 1.266 23 H -0.288 1.288 24 H -0.252 1.252 25 C 0.102 3.898 26 C 0.504 3.496 27 O -0.524 6.524 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.054 0.946 42 H 0.047 0.953 43 H 0.070 0.930 44 H 0.042 0.958 45 H 0.045 0.955 46 H 0.050 0.950 47 H 0.266 0.734 48 H 0.106 0.894 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.758 -19.021 -13.635 23.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.173 4.173 3 C -0.032 4.032 4 N -0.329 5.329 5 C -0.001 4.001 6 C -0.187 4.187 7 C -0.004 4.004 8 N -0.848 5.848 9 S 2.775 3.225 10 O -0.969 6.969 11 O -0.951 6.951 12 N -0.823 5.823 13 C -0.036 4.036 14 C 0.134 3.866 15 H 0.075 0.925 16 C -0.212 4.212 17 C -0.555 4.555 18 H 0.098 0.902 19 C -0.124 4.124 20 N -0.527 5.527 21 Si 0.683 3.317 22 H -0.191 1.191 23 H -0.214 1.214 24 H -0.176 1.176 25 C -0.027 4.027 26 C 0.290 3.710 27 O -0.399 6.399 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.088 0.912 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.124 0.876 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.222 -18.577 -12.556 22.455 hybrid contribution -0.466 -0.582 0.466 0.880 sum -1.688 -19.159 -12.090 22.718 Atomic orbital electron populations 1.21681 0.95185 1.01632 1.02162 1.21833 0.96226 0.97252 1.01978 1.21771 0.80298 0.96866 1.04268 1.47083 1.07453 1.72852 1.05532 1.21334 0.94427 1.01021 0.83339 1.22532 0.94154 0.98871 1.03149 1.21442 0.97551 0.98636 0.82803 1.58417 1.71562 1.33721 1.21070 1.02727 0.73950 0.72302 0.73560 1.93544 1.50671 1.82449 1.70284 1.93597 1.86383 1.86003 1.29154 1.58041 1.43617 1.56446 1.24213 1.21159 1.02452 0.97384 0.82589 1.19111 0.82857 0.97848 0.86750 0.92477 1.22391 0.99122 0.98961 1.00698 1.21131 1.47216 0.89822 0.97299 0.90187 1.24966 0.94019 0.95141 0.98301 1.69888 1.47289 1.14127 1.21392 0.87114 0.79591 0.82632 0.82317 1.19081 1.21382 1.17598 1.21700 0.87452 0.97101 0.96410 1.20522 0.90989 0.76778 0.82761 1.90802 1.64210 1.47259 1.37628 0.92295 0.92663 0.92739 0.92267 0.91841 0.88561 0.90725 0.91373 0.90198 0.88998 0.90332 0.89897 0.91191 0.92732 0.93470 0.91170 0.93887 0.93591 0.93105 0.92417 0.87565 0.86037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.16 0.37 -0.86 16 2 C -0.13 -1.24 6.23 -26.73 -0.17 -1.40 16 3 C 0.09 1.02 3.90 -4.04 -0.02 1.00 16 4 N -0.60 -6.98 1.69 -174.94 -0.30 -7.27 16 5 C 0.12 1.01 5.90 -4.50 -0.03 0.98 16 6 C -0.15 -1.00 5.67 -26.09 -0.15 -1.15 16 7 C 0.12 1.18 5.84 -3.99 -0.02 1.15 16 8 N -1.01 -14.14 2.91 -115.58 -0.34 -14.48 16 9 S 2.76 54.27 6.05 -107.50 -0.65 53.62 16 10 O -0.99 -20.06 16.32 -57.17 -0.93 -20.99 16 11 O -0.97 -22.95 15.38 -57.17 -0.88 -23.83 16 12 N -0.98 -19.99 3.12 -115.85 -0.36 -20.35 16 13 C 0.11 1.88 9.39 59.85 0.56 2.44 16 14 C 0.24 5.66 2.28 -69.08 -0.16 5.50 16 15 H 0.06 1.51 4.07 -51.93 -0.21 1.29 16 16 C -0.15 -3.15 8.86 37.16 0.33 -2.82 16 17 C -0.51 -14.46 8.82 -34.44 -0.30 -14.76 16 18 H 0.08 2.37 7.67 -52.49 -0.40 1.97 16 19 C 0.08 2.37 5.47 -17.82 -0.10 2.27 16 20 N -0.89 -27.44 13.96 55.43 0.77 -26.66 16 21 Si 0.86 23.05 26.98 -169.99 -4.59 18.47 16 22 H -0.27 -7.34 7.11 56.52 0.40 -6.94 16 23 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 24 H -0.25 -6.65 6.80 56.52 0.38 -6.26 16 25 C 0.10 1.39 5.58 -5.07 -0.03 1.36 16 26 C 0.50 7.60 5.86 -11.83 -0.07 7.53 16 27 O -0.52 -10.10 15.56 5.55 0.09 -10.02 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.10 1.40 6.58 -51.93 -0.34 1.05 16 34 H 0.07 0.71 7.92 -51.93 -0.41 0.30 16 35 H 0.07 0.62 7.84 -51.93 -0.41 0.21 16 36 H 0.08 0.47 7.85 -51.93 -0.41 0.07 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.52 6.31 -51.93 -0.33 0.20 16 39 H 0.08 0.79 7.43 -51.93 -0.39 0.40 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.05 0.63 7.47 -51.93 -0.39 0.25 16 43 H 0.07 1.12 6.58 -51.93 -0.34 0.78 16 44 H 0.04 0.75 2.87 -51.93 -0.15 0.60 16 45 H 0.05 0.90 6.96 -51.93 -0.36 0.54 16 46 H 0.05 1.13 8.12 -51.93 -0.42 0.71 16 47 H 0.27 7.74 8.31 -40.82 -0.34 7.40 16 48 H 0.11 1.00 6.64 -51.93 -0.34 0.66 16 49 H 0.12 1.91 7.07 -51.93 -0.37 1.54 16 LS Contribution 381.48 15.07 5.75 5.75 Total: -1.00 -36.74 381.48 -9.01 -45.76 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -7.80 Total: -1.25 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 0.22 Total: 1.26 kcal Atomic # 7 Polarization: -68.55 SS G_CDS: -0.22 Total: -68.76 kcal Atomic # 8 Polarization: -53.11 SS G_CDS: -1.73 Total: -54.84 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -4.59 Total: 18.47 kcal Atomic # 16 Polarization: 54.27 SS G_CDS: -0.65 Total: 53.62 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.74 -9.01 -45.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375698815.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.765 kcal (2) G-P(sol) polarization free energy of solvation -36.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds