Wall clock time and date at job start Wed Apr 1 2020 04:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47024 * 2 1 4 4 N 1.46494 * 109.46901 * 180.02562 * 3 2 1 5 5 C 1.45536 * 115.55327 * 90.00107 * 4 3 2 6 6 C 1.53110 * 111.83155 * 213.27675 * 5 4 3 7 7 C 1.54119 * 108.98703 * 273.89546 * 6 5 4 8 8 N 1.45507 * 108.32094 * 59.71149 * 7 6 5 9 9 S 1.65603 * 120.81767 * 212.02625 * 8 7 6 10 10 O 1.42104 * 106.39798 * 336.46154 * 9 8 7 11 11 O 1.42093 * 106.40321 * 203.54004 * 9 8 7 12 12 N 1.65595 * 107.21698 * 89.99954 * 9 8 7 13 13 C 1.46505 * 120.00176 * 270.00343 * 12 9 8 14 14 C 1.46506 * 120.00118 * 90.00351 * 12 9 8 15 15 H 1.09000 * 109.46950 * 359.97438 * 14 12 9 16 16 C 1.53003 * 109.46955 * 239.99906 * 14 12 9 17 17 C 1.50699 * 109.46911 * 119.99695 * 14 12 9 18 18 H 1.07993 * 120.00126 * 35.04973 * 17 14 12 19 19 C 1.37875 * 119.99751 * 215.04366 * 17 14 12 20 20 N 1.31514 * 120.00243 * 184.72506 * 19 17 14 21 21 Si 1.86802 * 120.00242 * 4.72822 * 19 17 14 22 22 H 1.48496 * 109.47292 * 84.81131 * 21 19 17 23 23 H 1.48494 * 109.47356 * 204.81577 * 21 19 17 24 24 H 1.48500 * 109.46883 * 324.81364 * 21 19 17 25 25 C 1.46700 * 118.36729 * 32.29747 * 8 7 6 26 26 C 1.32822 * 115.55244 * 270.01587 * 4 3 2 27 27 O 1.21284 * 118.97603 * 349.67210 * 26 4 3 28 28 H 1.09000 * 109.47048 * 299.99672 * 1 2 3 29 29 H 1.08998 * 109.47107 * 60.00242 * 1 2 3 30 30 H 1.09007 * 109.46988 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47262 * 239.99934 * 2 1 3 32 32 H 1.08998 * 109.47107 * 119.99758 * 2 1 3 33 33 H 1.09000 * 109.46941 * 60.00262 * 3 2 1 34 34 H 1.08998 * 109.46982 * 299.99835 * 3 2 1 35 35 H 1.08990 * 109.00756 * 92.67116 * 5 4 3 36 36 H 1.08998 * 108.94177 * 333.83953 * 5 4 3 37 37 H 1.09004 * 109.55043 * 154.04721 * 6 5 4 38 38 H 1.09001 * 109.55629 * 33.75442 * 6 5 4 39 39 H 1.09000 * 109.69036 * 300.00512 * 7 6 5 40 40 H 1.08996 * 109.72448 * 179.44154 * 7 6 5 41 41 H 1.09005 * 109.46733 * 270.00200 * 13 12 9 42 42 H 1.08994 * 109.46977 * 29.99319 * 13 12 9 43 43 H 1.08996 * 109.47136 * 150.00517 * 13 12 9 44 44 H 1.08998 * 109.47014 * 53.02339 * 16 14 12 45 45 H 1.09000 * 109.46602 * 293.01967 * 16 14 12 46 46 H 1.09002 * 109.46865 * 173.02028 * 16 14 12 47 47 H 0.96998 * 120.00432 * 180.02562 * 20 19 17 48 48 H 1.08998 * 109.53101 * 30.32742 * 25 8 7 49 49 H 1.09006 * 109.52956 * 150.54522 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1321 1.4427 -1.3139 6 6 5.4497 0.6629 -1.3157 7 6 6.5893 1.6027 -0.8761 8 7 6.2884 2.0924 0.4607 9 16 6.7658 3.6046 0.9377 10 8 7.8678 3.9564 0.1123 11 8 6.8360 3.5743 2.3566 12 7 5.5405 4.6497 0.5524 13 6 5.5222 5.3061 -0.7573 14 6 4.4748 4.9181 1.5212 15 1 4.6567 4.3441 2.4297 16 6 3.1269 4.5109 0.9224 17 6 4.4544 6.3884 1.8510 18 1 4.6894 7.1162 1.0885 19 6 4.1355 6.8045 3.1262 20 7 4.0266 8.0880 3.3912 21 14 3.8581 5.5451 4.4776 22 1 5.1630 5.1662 5.0766 23 1 2.9829 6.1284 5.5259 24 1 3.2078 4.3393 3.9046 25 6 5.5570 1.2111 1.3775 26 6 4.0784 1.4420 1.1975 27 8 3.3905 1.6318 2.1782 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 4.3285 2.4721 -1.6133 36 1 3.4496 0.9883 -2.0320 37 1 5.6515 0.2899 -2.3199 38 1 5.3791 -0.1745 -0.6214 39 1 6.6603 2.4424 -1.5675 40 1 7.5325 1.0565 -0.8636 41 1 6.0635 6.2503 -0.6981 42 1 5.9988 4.6597 -1.4943 43 1 4.4908 5.4966 -1.0538 44 1 3.1821 3.4808 0.5703 45 1 2.8872 5.1683 0.0867 46 1 2.3513 4.5935 1.6838 47 1 3.8026 8.3808 4.2884 48 1 5.7942 0.1717 1.1508 49 1 5.8434 1.4357 2.4050 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375698815.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:16 Heat of formation + Delta-G solvation = -117.582720 kcal Electronic energy + Delta-G solvation = -32897.444896 eV Core-core repulsion = 28793.110203 eV Total energy + Delta-G solvation = -4104.334693 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.68257 -38.58836 -38.14395 -38.02251 -37.10853 -36.97848 -34.56309 -34.08570 -32.31688 -31.67138 -29.42523 -27.40707 -27.05552 -26.79407 -26.43050 -22.78378 -22.56021 -22.12425 -20.68444 -19.89772 -19.35744 -19.01582 -18.23881 -17.94220 -17.49239 -17.27773 -16.82266 -16.29119 -15.76015 -15.62148 -15.50542 -15.20435 -14.93956 -14.75650 -14.60116 -14.34408 -14.24983 -13.89098 -13.72289 -13.61004 -13.50578 -13.41297 -13.14190 -13.12152 -13.05137 -12.88133 -12.84885 -12.66861 -12.54579 -12.45921 -12.29313 -12.12699 -12.04641 -11.87928 -11.82435 -11.54956 -11.26293 -11.07259 -10.80314 -10.11302 -9.75695 -9.59437 -8.40280 -6.40851 -0.55560 1.22027 1.29037 1.40707 1.45323 1.94899 2.07179 2.24702 2.44981 2.99471 3.18330 3.52305 3.60384 3.92031 3.98849 4.02527 4.10013 4.14174 4.30047 4.34005 4.38936 4.41867 4.51970 4.61365 4.66379 4.67196 4.76868 4.79753 4.85194 4.87915 4.92798 4.96880 4.99844 5.01486 5.08795 5.20195 5.25811 5.31099 5.31650 5.38930 5.42705 5.51217 5.54834 5.61256 5.93641 6.26276 6.56010 6.64810 7.14879 7.24699 8.75458 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010486 B = 0.006383 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.645815 B = 4385.319895 C = 5811.044615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.087 3.913 4 N -0.587 5.587 5 C 0.106 3.894 6 C -0.135 4.135 7 C 0.104 3.896 8 N -0.995 5.995 9 S 2.777 3.223 10 O -0.994 6.994 11 O -1.017 7.017 12 N -0.992 5.992 13 C 0.104 3.896 14 C 0.247 3.753 15 H 0.032 0.968 16 C -0.140 4.140 17 C -0.513 4.513 18 H 0.057 0.943 19 C 0.033 3.967 20 N -0.932 5.932 21 Si 0.901 3.099 22 H -0.281 1.281 23 H -0.274 1.274 24 H -0.250 1.250 25 C 0.101 3.899 26 C 0.496 3.504 27 O -0.579 6.579 28 H 0.039 0.961 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.066 0.934 36 H 0.117 0.883 37 H 0.134 0.866 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.034 0.966 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.057 0.943 46 H 0.028 0.972 47 H 0.268 0.732 48 H 0.156 0.844 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.812 -22.425 -17.355 28.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.036 4.036 4 N -0.319 5.319 5 C -0.015 4.015 6 C -0.174 4.174 7 C -0.019 4.019 8 N -0.837 5.837 9 S 2.789 3.211 10 O -0.978 6.978 11 O -1.001 7.001 12 N -0.833 5.833 13 C -0.041 4.041 14 C 0.142 3.858 15 H 0.050 0.950 16 C -0.199 4.199 17 C -0.553 4.553 18 H 0.075 0.925 19 C -0.167 4.167 20 N -0.572 5.572 21 Si 0.726 3.274 22 H -0.207 1.207 23 H -0.200 1.200 24 H -0.173 1.173 25 C -0.027 4.027 26 C 0.282 3.718 27 O -0.458 6.458 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.117 0.883 35 H 0.084 0.916 36 H 0.135 0.865 37 H 0.152 0.848 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.053 0.947 42 H 0.108 0.892 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.076 0.924 46 H 0.047 0.953 47 H 0.077 0.923 48 H 0.173 0.827 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.278 -21.961 -16.340 27.403 hybrid contribution -0.359 0.371 1.421 1.512 sum -1.637 -21.590 -14.919 26.294 Atomic orbital electron populations 1.21682 0.94656 1.02314 1.01929 1.21732 0.96601 0.95619 1.02215 1.21852 0.80090 0.98266 1.03431 1.47248 1.07858 1.70825 1.05932 1.21777 0.96189 1.01810 0.81748 1.22534 0.91533 0.97715 1.05584 1.21974 1.00070 0.99819 0.80069 1.57894 1.71243 1.31361 1.23235 1.01907 0.73565 0.73330 0.72339 1.93528 1.50826 1.83337 1.70068 1.93538 1.86965 1.87028 1.32535 1.57743 1.42631 1.58211 1.24761 1.21383 1.03459 0.97399 0.81846 1.18767 0.85248 0.94603 0.87209 0.94977 1.22225 0.96358 1.01185 1.00172 1.21456 1.45546 0.91955 0.96368 0.92498 1.25528 0.94797 0.96169 1.00211 1.69970 1.49930 1.15333 1.21918 0.86432 0.78843 0.81211 0.80867 1.20701 1.19963 1.17331 1.21796 0.86604 0.99302 0.95047 1.20768 0.91289 0.76534 0.83222 1.90790 1.65332 1.50004 1.39674 0.94203 0.91258 0.91606 0.89493 0.93939 0.92535 0.88335 0.91615 0.86530 0.84791 0.89637 0.89320 0.89154 0.94722 0.89184 0.90079 0.90676 0.92424 0.95308 0.92310 0.82667 0.88879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 71.98 0.71 -1.41 16 2 C -0.12 -1.92 6.23 30.60 0.19 -1.73 16 3 C 0.09 1.74 3.90 86.38 0.34 2.08 16 4 N -0.59 -11.95 1.69 -826.85 -1.39 -13.34 16 5 C 0.11 1.17 5.90 86.60 0.51 1.68 16 6 C -0.13 -0.97 5.67 31.01 0.18 -0.79 16 7 C 0.10 1.51 5.84 86.94 0.51 2.02 16 8 N -1.00 -25.34 2.91 -519.57 -1.51 -26.85 16 9 S 2.78 107.21 6.05 -56.49 -0.34 106.87 16 10 O -0.99 -38.96 16.32 -128.00 -2.09 -41.05 16 11 O -1.02 -49.50 15.38 -128.00 -1.97 -51.47 16 12 N -0.99 -40.02 3.12 -520.42 -1.62 -41.65 16 13 C 0.10 3.38 9.39 127.77 1.20 4.58 16 14 C 0.25 11.95 2.28 44.24 0.10 12.05 16 15 H 0.03 1.75 4.07 -2.39 -0.01 1.74 16 16 C -0.14 -5.79 8.86 71.98 0.64 -5.15 16 17 C -0.51 -29.81 8.82 25.60 0.23 -29.59 16 18 H 0.06 3.51 7.67 -2.91 -0.02 3.48 16 19 C 0.03 2.01 5.47 84.65 0.46 2.47 16 20 N -0.93 -59.61 13.96 21.45 0.30 -59.31 16 21 Si 0.90 49.58 26.98 68.60 1.85 51.43 16 22 H -0.28 -16.01 7.11 99.48 0.71 -15.30 16 23 H -0.27 -14.30 7.11 99.48 0.71 -13.59 16 24 H -0.25 -13.50 6.80 99.48 0.68 -12.83 16 25 C 0.10 2.56 5.58 85.60 0.48 3.04 16 26 C 0.50 14.31 5.86 87.97 0.52 14.82 16 27 O -0.58 -22.75 15.56 -3.04 -0.05 -22.80 16 28 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 1.63 6.58 -2.39 -0.02 1.62 16 34 H 0.10 1.50 7.92 -2.39 -0.02 1.48 16 35 H 0.07 0.83 7.84 -2.39 -0.02 0.81 16 36 H 0.12 0.55 7.85 -2.39 -0.02 0.53 16 37 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.09 0.58 6.31 -2.39 -0.02 0.57 16 39 H 0.09 1.23 7.43 -2.39 -0.02 1.21 16 40 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 42 H 0.09 2.12 7.47 -2.39 -0.02 2.10 16 43 H 0.08 2.43 6.58 -2.39 -0.02 2.42 16 44 H 0.07 2.59 2.87 -2.39 -0.01 2.58 16 45 H 0.06 2.21 6.96 -2.39 -0.02 2.19 16 46 H 0.03 1.29 8.12 -2.39 -0.02 1.27 16 47 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 48 H 0.16 2.35 6.64 -2.39 -0.02 2.33 16 49 H 0.09 2.96 7.07 -2.38 -0.02 2.94 16 Total: -1.00 -87.05 381.48 0.15 -86.90 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 0.92 Total: 7.18 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 6.05 Total: 4.09 kcal Atomic # 7 Polarization: -136.92 SS G_CDS: -4.23 Total: -141.15 kcal Atomic # 8 Polarization: -111.22 SS G_CDS: -4.10 Total: -115.32 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 1.85 Total: 51.43 kcal Atomic # 16 Polarization: 107.21 SS G_CDS: -0.34 Total: 106.87 kcal Total: -87.05 0.15 -86.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375698815.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.683 kcal (2) G-P(sol) polarization free energy of solvation -87.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds