Wall clock time and date at job start Wed Apr 1 2020 04:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46667 * 2 1 4 4 N 1.46497 * 109.46576 * 180.02562 * 3 2 1 5 5 C 1.45531 * 115.55554 * 90.00099 * 4 3 2 6 6 C 1.53116 * 111.83734 * 213.27780 * 5 4 3 7 7 C 1.54113 * 108.97897 * 273.89623 * 6 5 4 8 8 N 1.45515 * 108.32826 * 59.70886 * 7 6 5 9 9 S 1.65588 * 120.81863 * 212.02249 * 8 7 6 10 10 O 1.42102 * 106.40083 * 336.45685 * 9 8 7 11 11 O 1.42100 * 106.40324 * 203.53939 * 9 8 7 12 12 N 1.65599 * 107.21972 * 89.99466 * 9 8 7 13 13 C 1.46496 * 120.00508 * 270.00006 * 12 9 8 14 14 C 1.46500 * 119.99891 * 90.00258 * 12 9 8 15 15 H 1.09001 * 109.47193 * 0.02562 * 14 12 9 16 16 C 1.52999 * 109.47476 * 120.00118 * 14 12 9 17 17 C 1.50703 * 109.47126 * 240.00337 * 14 12 9 18 18 H 1.08002 * 119.99685 * 359.97438 * 17 14 12 19 19 C 1.37877 * 120.00216 * 180.02562 * 17 14 12 20 20 N 1.31516 * 120.00069 * 179.97438 * 19 17 14 21 21 Si 1.86800 * 119.99806 * 359.97438 * 19 17 14 22 22 H 1.48503 * 109.46845 * 90.00621 * 21 19 17 23 23 H 1.48503 * 109.47399 * 210.00111 * 21 19 17 24 24 H 1.48498 * 109.47295 * 330.00717 * 21 19 17 25 25 C 1.46703 * 118.36235 * 32.28788 * 8 7 6 26 26 C 1.32820 * 115.54826 * 270.01353 * 4 3 2 27 27 O 1.21278 * 118.98257 * 349.62511 * 26 4 3 28 28 H 1.08998 * 109.47311 * 60.00673 * 1 2 3 29 29 H 1.09003 * 109.46922 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47133 * 299.99713 * 1 2 3 31 31 H 1.08996 * 109.47162 * 239.99736 * 2 1 3 32 32 H 1.09003 * 109.46711 * 119.99678 * 2 1 3 33 33 H 1.08996 * 109.47545 * 59.99970 * 3 2 1 34 34 H 1.08998 * 109.46705 * 299.99697 * 3 2 1 35 35 H 1.09002 * 109.01183 * 92.66042 * 5 4 3 36 36 H 1.09009 * 108.93984 * 333.83963 * 5 4 3 37 37 H 1.08994 * 109.55190 * 154.04626 * 6 5 4 38 38 H 1.08995 * 109.54984 * 33.74587 * 6 5 4 39 39 H 1.08994 * 109.69452 * 299.99404 * 7 6 5 40 40 H 1.09008 * 109.69107 * 179.41669 * 7 6 5 41 41 H 1.08994 * 109.47553 * 270.00285 * 13 12 9 42 42 H 1.09002 * 109.46634 * 29.99848 * 13 12 9 43 43 H 1.08998 * 109.47408 * 149.99591 * 13 12 9 44 44 H 1.08996 * 109.47365 * 59.99865 * 16 14 12 45 45 H 1.08998 * 109.47451 * 180.02562 * 16 14 12 46 46 H 1.09001 * 109.46962 * 299.99814 * 16 14 12 47 47 H 0.97000 * 119.99667 * 179.97438 * 20 19 17 48 48 H 1.09000 * 109.53025 * 30.33994 * 25 8 7 49 49 H 1.09010 * 109.52400 * 150.54949 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1322 1.4428 -1.3138 6 6 5.4498 0.6629 -1.3158 7 6 6.5892 1.6029 -0.8761 8 7 6.2883 2.0926 0.4607 9 16 6.7657 3.6047 0.9377 10 8 7.8677 3.9565 0.1123 11 8 6.8359 3.5744 2.3566 12 7 5.5404 4.6499 0.5523 13 6 5.5221 5.3062 -0.7573 14 6 4.4747 4.9183 1.5210 15 1 4.6570 4.3449 2.4299 16 6 4.4538 6.4110 1.8559 17 6 3.1471 4.5171 0.9313 18 1 3.1018 4.1040 -0.0655 19 6 1.9903 4.6785 1.6640 20 7 0.8317 4.3289 1.1492 21 14 2.0687 5.3937 3.3879 22 1 1.9351 6.8710 3.3174 23 1 0.9627 4.8352 4.2064 24 1 3.3708 5.0437 4.0103 25 6 5.5568 1.2113 1.3775 26 6 4.0782 1.4421 1.1975 27 8 3.3906 1.6328 2.1781 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 4.3284 2.4723 -1.6134 36 1 3.4496 0.9883 -2.0320 37 1 5.6515 0.2900 -2.3199 38 1 5.3791 -0.1743 -0.6214 39 1 6.6602 2.4424 -1.5675 40 1 7.5322 1.0561 -0.8634 41 1 6.0634 6.2504 -0.6982 42 1 5.9987 4.6598 -1.4943 43 1 4.4907 5.4966 -1.0540 44 1 4.2717 6.9848 0.9472 45 1 3.6612 6.6106 2.5770 46 1 5.4140 6.7011 2.2824 47 1 0.0180 4.4421 1.6648 48 1 5.7942 0.1719 1.1509 49 1 5.8433 1.4359 2.4050 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375698816.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:19 Heat of formation + Delta-G solvation = -83.443860 kcal Electronic energy + Delta-G solvation = -33410.168725 eV Core-core repulsion = 29307.314404 eV Total energy + Delta-G solvation = -4102.854320 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.94909 -37.03810 -36.63651 -36.35471 -35.50480 -35.38666 -32.78678 -32.38914 -30.99371 -29.96617 -28.00312 -25.78791 -25.51744 -24.98304 -24.92666 -21.45642 -21.03997 -20.75877 -19.24904 -18.34530 -17.48890 -17.10201 -16.50027 -16.45173 -15.93071 -15.59252 -15.16256 -14.65885 -14.39584 -14.18023 -14.06163 -13.63989 -13.28900 -13.26039 -13.00978 -12.73224 -12.56416 -12.36599 -12.24766 -12.15182 -12.07821 -11.93479 -11.73740 -11.62070 -11.54086 -11.41380 -11.25345 -11.15128 -11.00006 -10.92750 -10.79691 -10.71124 -10.48732 -10.09408 -10.03727 -9.64878 -9.41999 -9.30529 -8.56574 -8.46402 -8.07815 -7.91584 -6.02805 -3.99548 1.00604 3.06360 3.33584 3.48338 3.51159 3.54482 3.67900 3.96765 4.50536 4.58151 4.70247 4.80121 5.10885 5.22782 5.25399 5.32282 5.42603 5.45105 5.48227 5.55145 5.57153 5.67570 5.74050 5.80214 5.87358 6.00564 6.05677 6.13012 6.17585 6.20120 6.24646 6.29172 6.32605 6.42233 6.53736 6.57640 6.64411 6.66614 6.68099 6.92304 7.14731 7.30274 7.35449 7.43081 7.73831 8.28063 8.54698 8.95791 8.97567 9.62485 11.08504 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009440 B = 0.008321 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.384286 B = 3364.174067 C = 5264.712978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.103 3.897 4 N -0.582 5.582 5 C 0.127 3.873 6 C -0.148 4.148 7 C 0.124 3.876 8 N -1.002 6.002 9 S 2.780 3.220 10 O -0.989 6.989 11 O -0.976 6.976 12 N -0.981 5.981 13 C 0.107 3.893 14 C 0.238 3.762 15 H 0.055 0.945 16 C -0.157 4.157 17 C -0.510 4.510 18 H 0.085 0.915 19 C 0.093 3.907 20 N -0.889 5.889 21 Si 0.873 3.127 22 H -0.285 1.285 23 H -0.298 1.298 24 H -0.265 1.265 25 C 0.103 3.897 26 C 0.509 3.491 27 O -0.516 6.516 28 H 0.053 0.947 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.125 0.875 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.043 0.957 42 H 0.049 0.951 43 H 0.085 0.915 44 H 0.057 0.943 45 H 0.048 0.952 46 H 0.030 0.970 47 H 0.261 0.739 48 H 0.100 0.900 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.352 -8.293 -8.077 13.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C -0.020 4.020 4 N -0.314 5.314 5 C 0.003 3.997 6 C -0.187 4.187 7 C -0.001 4.001 8 N -0.842 5.842 9 S 2.790 3.210 10 O -0.973 6.973 11 O -0.960 6.960 12 N -0.823 5.823 13 C -0.039 4.039 14 C 0.133 3.867 15 H 0.073 0.927 16 C -0.216 4.216 17 C -0.549 4.549 18 H 0.103 0.897 19 C -0.110 4.110 20 N -0.527 5.527 21 Si 0.704 3.296 22 H -0.213 1.213 23 H -0.226 1.226 24 H -0.190 1.190 25 C -0.026 4.026 26 C 0.294 3.706 27 O -0.390 6.390 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.143 0.857 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.103 0.897 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.049 0.951 47 H 0.071 0.929 48 H 0.118 0.882 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.703 -7.973 -7.099 12.605 hybrid contribution -0.448 0.345 0.567 0.801 sum 6.255 -7.628 -6.531 11.831 Atomic orbital electron populations 1.21611 0.95569 1.00454 1.02452 1.21880 0.96084 0.98702 1.00667 1.21760 0.79149 0.94544 1.06540 1.46711 1.07869 1.72345 1.04482 1.21183 0.93631 1.00310 0.84561 1.22544 0.94656 0.98867 1.02663 1.21412 0.97481 0.98547 0.82704 1.58045 1.71538 1.33356 1.21219 1.01985 0.73411 0.72397 0.73238 1.93553 1.50588 1.82784 1.70416 1.93580 1.86681 1.86263 1.29456 1.57519 1.42874 1.57864 1.24036 1.21230 1.03525 0.96302 0.82887 1.19151 0.86942 0.92675 0.87921 0.92700 1.22411 0.98817 0.99646 1.00714 1.20980 0.88087 1.42362 1.03421 0.89696 1.24619 0.95361 0.94422 0.96605 1.69798 0.97750 1.47934 1.37229 0.87099 0.77901 0.78059 0.86506 1.21299 1.22561 1.19044 1.21775 0.88954 0.96371 0.95520 1.20001 0.89824 0.77540 0.83265 1.90754 1.63884 1.46715 1.37629 0.92832 0.93656 0.92192 0.93396 0.92652 0.85728 0.91462 0.91911 0.90897 0.89486 0.90503 0.90217 0.91549 0.93812 0.93249 0.89672 0.92433 0.93367 0.95104 0.92935 0.88229 0.86649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.13 -2.03 6.23 -26.73 -0.17 -2.20 16 3 C 0.10 1.88 4.81 -4.04 -0.02 1.86 16 4 N -0.58 -9.65 2.43 -174.93 -0.43 -10.08 16 5 C 0.13 1.60 5.89 -4.50 -0.03 1.57 16 6 C -0.15 -1.42 5.67 -26.09 -0.15 -1.57 16 7 C 0.12 1.42 5.84 -3.99 -0.02 1.39 16 8 N -1.00 -15.32 2.91 -115.57 -0.34 -15.65 16 9 S 2.78 52.50 6.05 -107.50 -0.65 51.85 16 10 O -0.99 -19.02 16.32 -57.17 -0.93 -19.96 16 11 O -0.98 -21.58 15.38 -57.17 -0.88 -22.45 16 12 N -0.98 -19.11 3.12 -115.86 -0.36 -19.47 16 13 C 0.11 1.75 9.28 59.84 0.56 2.30 16 14 C 0.24 5.44 2.21 -69.08 -0.15 5.29 16 15 H 0.06 1.42 5.97 -51.93 -0.31 1.11 16 16 C -0.16 -3.43 8.67 37.16 0.32 -3.10 16 17 C -0.51 -12.42 7.28 -34.44 -0.25 -12.67 16 18 H 0.09 2.13 7.18 -52.49 -0.38 1.75 16 19 C 0.09 2.45 5.29 -17.82 -0.09 2.35 16 20 N -0.89 -23.95 13.07 55.43 0.72 -23.23 16 21 Si 0.87 22.17 24.37 -169.99 -4.14 18.03 16 22 H -0.29 -7.04 6.87 56.52 0.39 -6.66 16 23 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 24 H -0.27 -6.89 6.53 56.52 0.37 -6.52 16 25 C 0.10 1.61 5.57 -5.07 -0.03 1.58 16 26 C 0.51 9.56 6.32 -11.84 -0.07 9.48 16 27 O -0.52 -12.06 15.72 5.56 0.09 -11.98 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.12 2.89 5.79 -51.93 -0.30 2.59 16 34 H 0.07 1.25 7.92 -51.93 -0.41 0.84 16 35 H 0.06 0.86 7.84 -51.93 -0.41 0.45 16 36 H 0.07 0.80 7.85 -51.92 -0.41 0.39 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.74 6.31 -51.93 -0.33 0.41 16 39 H 0.08 0.89 7.43 -51.93 -0.39 0.50 16 40 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.69 7.47 -51.93 -0.39 0.30 16 43 H 0.08 1.46 7.02 -51.93 -0.36 1.09 16 44 H 0.06 1.16 7.67 -51.93 -0.40 0.77 16 45 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 46 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 48 H 0.10 1.18 6.64 -51.93 -0.34 0.83 16 49 H 0.12 1.97 7.07 -51.92 -0.37 1.61 16 LS Contribution 379.87 15.07 5.72 5.72 Total: -1.00 -31.58 379.87 -8.88 -40.46 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -7.94 Total: 2.14 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 0.26 Total: 4.61 kcal Atomic # 7 Polarization: -68.03 SS G_CDS: -0.40 Total: -68.43 kcal Atomic # 8 Polarization: -52.66 SS G_CDS: -1.72 Total: -54.39 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.14 Total: 18.03 kcal Atomic # 16 Polarization: 52.50 SS G_CDS: -0.65 Total: 51.85 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.58 -8.88 -40.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375698816.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.985 kcal (2) G-P(sol) polarization free energy of solvation -31.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds