Wall clock time and date at job start Wed Apr 1 2020 04:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46667 * 2 1 4 4 N 1.46497 * 109.46576 * 180.02562 * 3 2 1 5 5 C 1.45531 * 115.55554 * 90.00099 * 4 3 2 6 6 C 1.53116 * 111.83734 * 213.27780 * 5 4 3 7 7 C 1.54113 * 108.97897 * 273.89623 * 6 5 4 8 8 N 1.45515 * 108.32826 * 59.70886 * 7 6 5 9 9 S 1.65588 * 120.81863 * 212.02249 * 8 7 6 10 10 O 1.42102 * 106.40083 * 336.45685 * 9 8 7 11 11 O 1.42100 * 106.40324 * 203.53939 * 9 8 7 12 12 N 1.65599 * 107.21972 * 89.99466 * 9 8 7 13 13 C 1.46496 * 120.00508 * 270.00006 * 12 9 8 14 14 C 1.46500 * 119.99891 * 90.00258 * 12 9 8 15 15 H 1.09001 * 109.47193 * 0.02562 * 14 12 9 16 16 C 1.52999 * 109.47476 * 120.00118 * 14 12 9 17 17 C 1.50703 * 109.47126 * 240.00337 * 14 12 9 18 18 H 1.08002 * 119.99685 * 359.97438 * 17 14 12 19 19 C 1.37877 * 120.00216 * 180.02562 * 17 14 12 20 20 N 1.31516 * 120.00069 * 179.97438 * 19 17 14 21 21 Si 1.86800 * 119.99806 * 359.97438 * 19 17 14 22 22 H 1.48503 * 109.46845 * 90.00621 * 21 19 17 23 23 H 1.48503 * 109.47399 * 210.00111 * 21 19 17 24 24 H 1.48498 * 109.47295 * 330.00717 * 21 19 17 25 25 C 1.46703 * 118.36235 * 32.28788 * 8 7 6 26 26 C 1.32820 * 115.54826 * 270.01353 * 4 3 2 27 27 O 1.21278 * 118.98257 * 349.62511 * 26 4 3 28 28 H 1.08998 * 109.47311 * 60.00673 * 1 2 3 29 29 H 1.09003 * 109.46922 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47133 * 299.99713 * 1 2 3 31 31 H 1.08996 * 109.47162 * 239.99736 * 2 1 3 32 32 H 1.09003 * 109.46711 * 119.99678 * 2 1 3 33 33 H 1.08996 * 109.47545 * 59.99970 * 3 2 1 34 34 H 1.08998 * 109.46705 * 299.99697 * 3 2 1 35 35 H 1.09002 * 109.01183 * 92.66042 * 5 4 3 36 36 H 1.09009 * 108.93984 * 333.83963 * 5 4 3 37 37 H 1.08994 * 109.55190 * 154.04626 * 6 5 4 38 38 H 1.08995 * 109.54984 * 33.74587 * 6 5 4 39 39 H 1.08994 * 109.69452 * 299.99404 * 7 6 5 40 40 H 1.09008 * 109.69107 * 179.41669 * 7 6 5 41 41 H 1.08994 * 109.47553 * 270.00285 * 13 12 9 42 42 H 1.09002 * 109.46634 * 29.99848 * 13 12 9 43 43 H 1.08998 * 109.47408 * 149.99591 * 13 12 9 44 44 H 1.08996 * 109.47365 * 59.99865 * 16 14 12 45 45 H 1.08998 * 109.47451 * 180.02562 * 16 14 12 46 46 H 1.09001 * 109.46962 * 299.99814 * 16 14 12 47 47 H 0.97000 * 119.99667 * 179.97438 * 20 19 17 48 48 H 1.09000 * 109.53025 * 30.33994 * 25 8 7 49 49 H 1.09010 * 109.52400 * 150.54949 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1322 1.4428 -1.3138 6 6 5.4498 0.6629 -1.3158 7 6 6.5892 1.6029 -0.8761 8 7 6.2883 2.0926 0.4607 9 16 6.7657 3.6047 0.9377 10 8 7.8677 3.9565 0.1123 11 8 6.8359 3.5744 2.3566 12 7 5.5404 4.6499 0.5523 13 6 5.5221 5.3062 -0.7573 14 6 4.4747 4.9183 1.5210 15 1 4.6570 4.3449 2.4299 16 6 4.4538 6.4110 1.8559 17 6 3.1471 4.5171 0.9313 18 1 3.1018 4.1040 -0.0655 19 6 1.9903 4.6785 1.6640 20 7 0.8317 4.3289 1.1492 21 14 2.0687 5.3937 3.3879 22 1 1.9351 6.8710 3.3174 23 1 0.9627 4.8352 4.2064 24 1 3.3708 5.0437 4.0103 25 6 5.5568 1.2113 1.3775 26 6 4.0782 1.4421 1.1975 27 8 3.3906 1.6328 2.1781 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 4.3284 2.4723 -1.6134 36 1 3.4496 0.9883 -2.0320 37 1 5.6515 0.2900 -2.3199 38 1 5.3791 -0.1743 -0.6214 39 1 6.6602 2.4424 -1.5675 40 1 7.5322 1.0561 -0.8634 41 1 6.0634 6.2504 -0.6982 42 1 5.9987 4.6598 -1.4943 43 1 4.4907 5.4966 -1.0540 44 1 4.2717 6.9848 0.9472 45 1 3.6612 6.6106 2.5770 46 1 5.4140 6.7011 2.2824 47 1 0.0180 4.4421 1.6648 48 1 5.7942 0.1719 1.1509 49 1 5.8433 1.4359 2.4050 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375698816.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:19 Heat of formation + Delta-G solvation = -106.974255 kcal Electronic energy + Delta-G solvation = -33411.189079 eV Core-core repulsion = 29307.314404 eV Total energy + Delta-G solvation = -4103.874675 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.27872 -38.53375 -38.02967 -37.94552 -37.00625 -36.80773 -34.34301 -33.95450 -32.13076 -31.72936 -29.23316 -27.27543 -26.81750 -26.66153 -26.25743 -22.77375 -22.40589 -22.13847 -20.58227 -19.72930 -19.03064 -18.64948 -18.26106 -17.77713 -17.30299 -17.01704 -16.78622 -16.27308 -15.60435 -15.50322 -15.39585 -15.05103 -14.82112 -14.64460 -14.48142 -14.21770 -14.09849 -13.88773 -13.71250 -13.60125 -13.50727 -13.45246 -13.16351 -13.05968 -12.93525 -12.79519 -12.74216 -12.65728 -12.43917 -12.23319 -12.17792 -12.00675 -11.95416 -11.78722 -11.51739 -11.40249 -11.21419 -10.81887 -10.50129 -9.92481 -9.68995 -9.27286 -8.10819 -6.03590 -0.45528 1.25083 1.37989 1.44564 1.67550 2.07816 2.36418 2.43007 2.54137 3.23738 3.28267 3.64660 3.73235 3.98248 4.10308 4.12730 4.22649 4.27804 4.35989 4.40005 4.46633 4.47657 4.59502 4.62263 4.67077 4.73248 4.81482 4.84906 4.87923 4.91309 4.96910 5.00124 5.06741 5.12186 5.13898 5.24717 5.32261 5.36415 5.40183 5.46683 5.57579 5.65736 5.78101 5.84576 5.94196 6.50452 6.93585 6.95514 7.56646 7.57843 9.01431 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009440 B = 0.008321 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.384286 B = 3364.174067 C = 5264.712978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.122 4.122 3 C 0.108 3.892 4 N -0.576 5.576 5 C 0.114 3.886 6 C -0.134 4.134 7 C 0.110 3.890 8 N -0.996 5.996 9 S 2.788 3.212 10 O -0.990 6.990 11 O -1.014 7.014 12 N -0.988 5.988 13 C 0.102 3.898 14 C 0.243 3.757 15 H 0.022 0.978 16 C -0.157 4.157 17 C -0.477 4.477 18 H 0.078 0.922 19 C 0.061 3.939 20 N -0.907 5.907 21 Si 0.895 3.105 22 H -0.272 1.272 23 H -0.312 1.312 24 H -0.279 1.279 25 C 0.108 3.892 26 C 0.501 3.499 27 O -0.576 6.576 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.030 0.970 31 H 0.081 0.919 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.096 0.904 37 H 0.130 0.870 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.033 0.967 46 H 0.044 0.956 47 H 0.255 0.745 48 H 0.147 0.853 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.228 -9.839 -11.133 16.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.160 4.160 3 C -0.016 4.016 4 N -0.306 5.306 5 C -0.008 4.008 6 C -0.172 4.172 7 C -0.014 4.014 8 N -0.837 5.837 9 S 2.799 3.201 10 O -0.974 6.974 11 O -0.999 6.999 12 N -0.829 5.829 13 C -0.043 4.043 14 C 0.137 3.863 15 H 0.040 0.960 16 C -0.216 4.216 17 C -0.516 4.516 18 H 0.096 0.904 19 C -0.139 4.139 20 N -0.547 5.547 21 Si 0.728 3.272 22 H -0.199 1.199 23 H -0.241 1.241 24 H -0.205 1.205 25 C -0.021 4.021 26 C 0.287 3.713 27 O -0.454 6.454 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.049 0.951 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.114 0.886 37 H 0.148 0.852 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.051 0.949 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.165 0.835 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.617 -9.489 -10.220 16.393 hybrid contribution -0.976 0.781 1.423 1.893 sum 7.641 -8.708 -8.797 14.547 Atomic orbital electron populations 1.21592 0.95203 1.01749 1.01232 1.21753 0.96328 0.96437 1.01527 1.21501 0.80462 0.96126 1.03479 1.46858 1.07297 1.70857 1.05551 1.21540 0.95873 1.00794 0.82558 1.22523 0.91593 0.97829 1.05296 1.21884 0.99592 0.99564 0.80370 1.57790 1.71040 1.31868 1.23004 1.01560 0.73259 0.72987 0.72321 1.93545 1.50523 1.83274 1.70084 1.93533 1.87178 1.86964 1.32183 1.57458 1.41762 1.59068 1.24605 1.21423 1.03516 0.97460 0.81929 1.18797 0.87080 0.92891 0.87505 0.96026 1.22365 0.99076 0.98966 1.01188 1.20980 0.88267 1.39929 1.02460 0.90370 1.24939 0.95898 0.95589 0.97522 1.69854 0.97778 1.49639 1.37444 0.86769 0.76402 0.78495 0.85567 1.19871 1.24130 1.20531 1.21735 0.86750 0.98772 0.94796 1.20565 0.90869 0.76754 0.83111 1.90737 1.65418 1.49568 1.39705 0.92365 0.91038 0.95111 0.90079 0.93897 0.90922 0.92270 0.92914 0.88582 0.85182 0.89775 0.89576 0.88754 0.92580 0.90371 0.90615 0.90776 0.94878 0.93689 0.93577 0.83506 0.88729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.91 71.98 0.71 -3.21 16 2 C -0.12 -3.54 6.23 30.60 0.19 -3.34 16 3 C 0.11 3.97 4.81 86.38 0.42 4.38 16 4 N -0.58 -18.43 2.43 -826.83 -2.01 -20.44 16 5 C 0.11 2.49 5.89 86.60 0.51 3.00 16 6 C -0.13 -1.86 5.67 31.01 0.18 -1.68 16 7 C 0.11 2.00 5.84 86.94 0.51 2.51 16 8 N -1.00 -28.05 2.91 -519.54 -1.51 -29.56 16 9 S 2.79 101.84 6.05 -56.49 -0.34 101.50 16 10 O -0.99 -35.61 16.32 -128.00 -2.09 -37.70 16 11 O -1.01 -45.33 15.38 -128.00 -1.97 -47.30 16 12 N -0.99 -37.56 3.12 -520.46 -1.62 -39.19 16 13 C 0.10 3.12 9.28 127.77 1.19 4.30 16 14 C 0.24 11.25 2.21 44.25 0.10 11.35 16 15 H 0.02 1.18 5.97 -2.39 -0.01 1.16 16 16 C -0.16 -6.82 8.67 71.98 0.62 -6.20 16 17 C -0.48 -23.66 7.28 25.60 0.19 -23.47 16 18 H 0.08 3.96 7.18 -2.91 -0.02 3.93 16 19 C 0.06 3.30 5.29 84.65 0.45 3.74 16 20 N -0.91 -50.67 13.07 21.45 0.28 -50.39 16 21 Si 0.89 46.89 24.37 68.60 1.67 48.56 16 22 H -0.27 -13.46 6.87 99.48 0.68 -12.78 16 23 H -0.31 -16.94 7.11 99.48 0.71 -16.23 16 24 H -0.28 -15.15 6.53 99.48 0.65 -14.50 16 25 C 0.11 3.24 5.57 85.60 0.48 3.72 16 26 C 0.50 18.79 6.32 87.97 0.56 19.34 16 27 O -0.58 -28.22 15.72 -3.02 -0.05 -28.27 16 28 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.60 16 30 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.07 3.53 5.79 -2.39 -0.01 3.52 16 34 H 0.06 2.21 7.92 -2.39 -0.02 2.19 16 35 H 0.05 1.28 7.84 -2.39 -0.02 1.27 16 36 H 0.10 1.68 7.85 -2.38 -0.02 1.66 16 37 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.08 1.13 6.31 -2.39 -0.02 1.12 16 39 H 0.09 1.50 7.43 -2.39 -0.02 1.48 16 40 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.08 1.92 7.47 -2.39 -0.02 1.90 16 43 H 0.08 2.47 7.02 -2.39 -0.02 2.45 16 44 H 0.07 2.92 7.67 -2.39 -0.02 2.90 16 45 H 0.03 1.53 3.27 -2.39 -0.01 1.52 16 46 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 48 H 0.15 2.96 6.64 -2.39 -0.02 2.94 16 49 H 0.09 3.28 7.07 -2.38 -0.02 3.26 16 Total: -1.00 -73.76 379.87 -0.69 -74.45 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.86 Total: 13.89 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 6.09 Total: 14.45 kcal Atomic # 7 Polarization: -134.72 SS G_CDS: -4.87 Total: -139.58 kcal Atomic # 8 Polarization: -109.16 SS G_CDS: -4.10 Total: -113.27 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 1.67 Total: 48.56 kcal Atomic # 16 Polarization: 101.84 SS G_CDS: -0.34 Total: 101.50 kcal Total: -73.76 -0.69 -74.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375698816.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.523 kcal (2) G-P(sol) polarization free energy of solvation -73.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds