Wall clock time and date at job start Wed Apr 1 2020 04:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46892 * 2 1 4 4 N 1.46500 * 109.46852 * 119.99438 * 2 1 3 5 5 S 1.65601 * 119.99649 * 144.42074 * 4 2 1 6 6 O 1.42101 * 104.27546 * 178.95025 * 5 4 2 7 7 O 1.42097 * 104.27569 * 51.09966 * 5 4 2 8 8 C 1.81393 * 104.45146 * 295.02439 * 5 4 2 9 9 H 1.08997 * 110.91903 * 65.57393 * 8 5 4 10 10 C 1.55279 * 111.10118 * 189.48841 * 8 5 4 11 11 C 1.54327 * 103.01021 * 153.44850 * 10 8 5 12 12 N 1.47023 * 107.26662 * 337.88466 * 11 10 8 13 13 C 1.34783 * 125.64371 * 178.91848 * 12 11 10 14 14 O 1.21588 * 119.99751 * 180.02562 * 13 12 11 15 15 N 1.34771 * 120.00062 * 0.02562 * 13 12 11 16 16 C 1.46504 * 119.99815 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.46876 * 180.02562 * 16 15 13 18 18 C 1.52998 * 109.47112 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.47460 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99756 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00191 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00210 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99947 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47049 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46676 * 119.99799 * 23 21 19 26 26 H 1.48495 * 109.47029 * 239.99794 * 23 21 19 27 27 C 1.47425 * 108.70753 * 358.94256 * 12 11 10 28 28 H 1.09000 * 109.47649 * 300.00627 * 1 2 3 29 29 H 1.09007 * 109.47042 * 60.00269 * 1 2 3 30 30 H 1.08996 * 109.47345 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47201 * 239.99638 * 2 1 3 32 32 H 1.08998 * 109.47098 * 175.25062 * 3 2 1 33 33 H 1.09004 * 109.46804 * 295.24733 * 3 2 1 34 34 H 1.08994 * 109.47390 * 55.24871 * 3 2 1 35 35 H 0.97000 * 120.00145 * 324.42811 * 4 2 1 36 36 H 1.09002 * 110.61824 * 35.09553 * 10 8 5 37 37 H 1.08996 * 110.90640 * 271.93807 * 10 8 5 38 38 H 1.08997 * 109.88171 * 218.46790 * 11 10 8 39 39 H 1.08996 * 110.01136 * 97.37364 * 11 10 8 40 40 H 0.96999 * 120.00321 * 0.02562 * 15 13 12 41 41 H 1.09000 * 109.47187 * 300.00174 * 16 15 13 42 42 H 1.08994 * 109.46961 * 60.00782 * 16 15 13 43 43 H 1.08998 * 109.47632 * 299.99999 * 17 16 15 44 44 H 1.09004 * 109.47230 * 60.00179 * 17 16 15 45 45 H 1.09001 * 109.47412 * 300.00257 * 18 17 16 46 46 H 1.09003 * 109.47335 * 60.00220 * 18 17 16 47 47 H 0.96999 * 120.00290 * 180.02562 * 22 21 19 48 48 H 1.09001 * 110.36953 * 142.96770 * 27 12 11 49 49 H 1.09004 * 110.36639 * 265.17809 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 16 3.3940 -1.6091 1.1184 6 8 3.5685 -2.0917 2.4436 7 8 4.3549 -0.7509 0.5189 8 6 2.9673 -2.9692 -0.0034 9 1 2.7837 -2.5988 -1.0119 10 6 4.0723 -4.0601 -0.0049 11 6 3.2985 -5.3378 -0.3929 12 7 1.8837 -5.1073 -0.0662 13 6 0.8773 -5.9793 -0.2745 14 8 -0.2598 -5.6808 0.0358 15 7 1.1314 -7.1821 -0.8268 16 6 0.0375 -8.1302 -1.0527 17 6 0.5927 -9.4080 -1.6849 18 6 -0.5495 -10.3984 -1.9203 19 6 -0.0029 -11.6569 -2.5436 20 1 1.0537 -11.7420 -2.7507 21 6 -0.8516 -12.6996 -2.8494 22 7 -2.1382 -12.5958 -2.5977 23 14 -0.1738 -14.2599 -3.6213 24 1 1.2942 -14.1261 -3.8007 25 1 -0.4602 -15.4158 -2.7342 26 1 -0.8165 -14.4783 -4.9421 27 6 1.7480 -3.7643 0.5266 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1266 1.4438 0.0851 33 1 1.7478 1.9312 -0.9295 34 1 1.6088 1.9804 0.8443 35 1 1.5357 -0.6097 2.0338 36 1 4.5124 -4.1621 0.9871 37 1 4.8403 -3.8347 -0.7447 38 1 3.6767 -6.1872 0.1758 39 1 3.4060 -5.5292 -1.4605 40 1 2.0386 -7.4205 -1.0740 41 1 -0.4360 -8.3720 -0.1013 42 1 -0.6980 -7.6835 -1.7216 43 1 1.0666 -9.1666 -2.6363 44 1 1.3281 -9.8546 -1.0157 45 1 -1.0231 -10.6398 -0.9687 46 1 -1.2853 -9.9521 -2.5893 47 1 -2.7352 -13.3295 -2.8125 48 1 0.8191 -3.2972 0.1992 49 1 1.7784 -3.8249 1.6145 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378194306.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:05 Heat of formation + Delta-G solvation = -144.045913 kcal Electronic energy + Delta-G solvation = -28651.334002 eV Core-core repulsion = 24545.851779 eV Total energy + Delta-G solvation = -4105.482223 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.38503 -38.89147 -38.37722 -37.65344 -37.11812 -36.93426 -35.22181 -33.52462 -32.32733 -31.53599 -30.26893 -28.52428 -27.98334 -25.63533 -24.22455 -23.07309 -22.38847 -22.27654 -21.00756 -20.37235 -19.27509 -18.95380 -18.49306 -18.08954 -17.29032 -17.05908 -16.87151 -16.46276 -16.17981 -15.97649 -15.49996 -15.33259 -15.20861 -14.79795 -14.34461 -14.30202 -14.21610 -14.14188 -13.84816 -13.73328 -13.48311 -13.33364 -13.22604 -13.16986 -13.01217 -12.80800 -12.77053 -12.54652 -12.49004 -12.33834 -12.32967 -12.14530 -11.90711 -11.68896 -11.67834 -11.66752 -11.32708 -11.14741 -10.55694 -10.49342 -10.29050 -9.62391 -8.19177 -6.30448 -0.88327 1.41326 1.42235 1.43562 1.55549 1.68333 2.03118 2.42006 2.60007 2.80182 2.97914 3.14764 3.17544 3.44746 3.75310 3.84325 4.07908 4.10166 4.16333 4.17832 4.22555 4.25739 4.42899 4.45073 4.54744 4.56508 4.63269 4.71095 4.83488 4.90306 4.94407 4.95465 4.96484 5.01450 5.11396 5.17948 5.28253 5.39814 5.43978 5.44835 5.53662 5.71483 5.84806 5.93298 6.08096 6.22889 6.85871 6.89702 7.39090 7.45530 8.93092 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024586 B = 0.001769 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.593103 B =15824.636551 C =16452.411663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 C -0.174 4.174 4 N -1.110 6.110 5 S 2.640 3.360 6 O -0.984 6.984 7 O -0.972 6.972 8 C -0.604 4.604 9 H 0.174 0.826 10 C -0.111 4.111 11 C 0.095 3.905 12 N -0.634 5.634 13 C 0.715 3.285 14 O -0.634 6.634 15 N -0.726 5.726 16 C 0.150 3.850 17 C -0.100 4.100 18 C 0.023 3.977 19 C -0.539 4.539 20 H 0.067 0.933 21 C -0.005 4.005 22 N -0.935 5.935 23 Si 0.967 3.033 24 H -0.258 1.258 25 H -0.281 1.281 26 H -0.280 1.280 27 C 0.146 3.854 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.425 0.575 36 H 0.094 0.906 37 H 0.133 0.867 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.411 0.589 41 H 0.047 0.953 42 H 0.049 0.951 43 H 0.069 0.931 44 H 0.067 0.933 45 H -0.008 1.008 46 H -0.007 1.007 47 H 0.263 0.737 48 H 0.093 0.907 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.464 28.668 4.469 32.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.033 3.967 3 C -0.233 4.233 4 N -0.871 5.871 5 S 2.733 3.267 6 O -0.974 6.974 7 O -0.962 6.962 8 C -0.714 4.714 9 H 0.192 0.808 10 C -0.150 4.150 11 C -0.028 4.028 12 N -0.373 5.373 13 C 0.417 3.583 14 O -0.516 6.516 15 N -0.382 5.382 16 C 0.025 3.975 17 C -0.138 4.138 18 C -0.015 4.015 19 C -0.577 4.577 20 H 0.085 0.915 21 C -0.202 4.202 22 N -0.575 5.575 23 Si 0.792 3.208 24 H -0.182 1.182 25 H -0.207 1.207 26 H -0.206 1.206 27 C 0.022 3.978 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.261 0.739 36 H 0.112 0.888 37 H 0.151 0.849 38 H 0.105 0.895 39 H 0.111 0.889 40 H 0.247 0.753 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.011 0.989 46 H 0.012 0.988 47 H 0.072 0.928 48 H 0.111 0.889 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.341 28.903 4.939 32.641 hybrid contribution -0.636 -1.345 -0.379 1.535 sum 13.705 27.558 4.561 31.114 Atomic orbital electron populations 1.22132 0.93127 1.02975 1.03744 1.20962 0.96052 0.93616 0.86080 1.22352 1.01637 0.95920 1.03410 1.55549 1.47747 1.64159 1.19675 1.04033 0.73533 0.74931 0.74236 1.93584 1.85382 1.82502 1.35931 1.93596 1.59705 1.62982 1.79919 1.31932 1.04941 1.15407 1.19077 0.80811 1.22654 0.95890 0.90728 1.05734 1.22267 0.78839 0.99009 1.02662 1.47464 1.07526 1.16248 1.66056 1.15610 0.83430 0.80633 0.78668 1.90900 1.21910 1.78535 1.60213 1.45037 1.12393 1.14593 1.66177 1.21113 0.88561 0.88364 0.99460 1.21585 0.98967 0.92916 1.00313 1.18948 0.93825 0.93581 0.95113 1.21709 0.94805 1.00783 1.40405 0.91468 1.26032 0.95111 1.02625 0.96459 1.70118 1.04412 1.33654 1.49345 0.85361 0.79057 0.78538 0.77834 1.18156 1.20687 1.20611 1.21732 0.96951 0.81239 0.97868 0.91422 0.90060 0.92156 0.88624 0.92746 0.90113 0.91777 0.73887 0.88769 0.84881 0.89476 0.88899 0.75254 0.93475 0.93249 0.91251 0.91405 0.98944 0.98845 0.92840 0.88862 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 9.44 71.98 0.68 -0.42 16 2 C 0.14 1.10 3.29 44.99 0.15 1.25 16 3 C -0.17 -1.55 9.52 71.98 0.69 -0.86 16 4 N -1.11 -10.77 5.27 -169.38 -0.89 -11.67 16 5 S 2.64 35.15 4.90 -56.49 -0.28 34.87 16 6 O -0.98 -19.94 17.71 -127.65 -2.26 -22.20 16 7 O -0.97 -17.89 17.11 -127.65 -2.18 -20.08 16 8 C -0.60 -5.92 3.50 32.03 0.11 -5.81 16 9 H 0.17 0.85 7.70 -2.39 -0.02 0.83 16 10 C -0.11 -0.92 6.44 31.83 0.21 -0.72 16 11 C 0.09 1.13 6.15 86.73 0.53 1.66 16 12 N -0.63 -13.01 3.33 -829.75 -2.76 -15.78 16 13 C 0.72 21.35 8.49 179.05 1.52 22.87 16 14 O -0.63 -24.74 16.60 -3.99 -0.07 -24.80 16 15 N -0.73 -20.13 5.52 -478.54 -2.64 -22.77 16 16 C 0.15 5.25 5.67 86.38 0.49 5.74 16 17 C -0.10 -3.76 5.27 30.59 0.16 -3.60 16 18 C 0.02 1.19 4.97 29.85 0.15 1.33 16 19 C -0.54 -29.72 9.11 25.60 0.23 -29.49 16 20 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 21 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 22 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 23 Si 0.97 43.41 29.54 68.60 2.03 45.44 16 24 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 27 C 0.15 2.41 6.30 86.86 0.55 2.96 16 28 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.10 0.48 7.34 -2.39 -0.02 0.46 16 32 H 0.05 0.69 7.43 -2.39 -0.02 0.67 16 33 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 34 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.42 3.27 8.80 -96.74 -0.85 2.42 16 36 H 0.09 0.76 7.97 -2.39 -0.02 0.74 16 37 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.41 8.55 7.46 -92.71 -0.69 7.86 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 45 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 46 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 47 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 48 H 0.09 1.55 8.04 -2.39 -0.02 1.53 16 49 H 0.08 1.31 7.76 -2.39 -0.02 1.29 16 Total: -1.00 -83.06 410.73 -3.44 -86.50 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -0.60 Total: 11.87 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 5.93 Total: -4.89 kcal Atomic # 7 Polarization: -100.70 SS G_CDS: -6.01 Total: -106.70 kcal Atomic # 8 Polarization: -62.57 SS G_CDS: -4.51 Total: -67.08 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: 35.15 SS G_CDS: -0.28 Total: 34.87 kcal Total: -83.06 -3.44 -86.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378194306.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.547 kcal (2) G-P(sol) polarization free energy of solvation -83.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds