Wall clock time and date at job start Wed Apr 1 2020 05:33:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52997 * 109.47244 * 2 1
4 4 C 1.52991 * 109.47217 * 120.00549 * 2 1 3
5 5 N 1.46499 * 109.47239 * 174.99717 * 4 2 1
6 6 C 1.45648 * 117.70769 * 270.01733 * 5 4 2
7 7 C 1.53466 * 110.74099 * 157.95209 * 6 5 4
8 8 N 1.47267 * 107.93194 * 46.91445 * 7 6 5
9 9 S 1.65604 * 121.35127 * 118.51118 * 8 7 6
10 10 O 1.42103 * 106.40360 * 156.17960 * 9 8 7
11 11 O 1.42101 * 106.40002 * 23.25689 * 9 8 7
12 12 N 1.65603 * 107.21689 * 269.71700 * 9 8 7
13 13 C 1.46499 * 119.99954 * 269.99863 * 12 9 8
14 14 C 1.46506 * 120.00110 * 90.00259 * 12 9 8
15 15 H 1.08998 * 109.46566 * 359.97438 * 14 12 9
16 16 C 1.52997 * 109.47289 * 119.99604 * 14 12 9
17 17 C 1.50697 * 109.47015 * 240.00062 * 14 12 9
18 18 H 1.07998 * 120.00039 * 359.97438 * 17 14 12
19 19 C 1.37880 * 119.99815 * 179.97438 * 17 14 12
20 20 N 1.31517 * 119.99524 * 179.97438 * 19 17 14
21 21 Si 1.86794 * 120.00267 * 359.97438 * 19 17 14
22 22 H 1.48506 * 109.46589 * 89.99875 * 21 19 17
23 23 H 1.48490 * 109.47303 * 209.99928 * 21 19 17
24 24 H 1.48497 * 109.46869 * 330.00523 * 21 19 17
25 25 C 1.47051 * 117.29556 * 298.24008 * 8 7 6
26 26 C 1.33385 * 117.70706 * 89.99592 * 5 4 2
27 27 O 1.21287 * 118.48742 * 4.32200 * 26 5 4
28 28 H 1.09004 * 109.46821 * 299.99705 * 1 2 3
29 29 H 1.08998 * 109.47195 * 59.99673 * 1 2 3
30 30 H 1.09001 * 109.47461 * 180.02562 * 1 2 3
31 31 H 1.09001 * 109.46348 * 240.00486 * 2 1 3
32 32 H 1.08995 * 109.47227 * 60.00215 * 3 2 1
33 33 H 1.09000 * 109.47001 * 180.02562 * 3 2 1
34 34 H 1.09004 * 109.47146 * 300.00679 * 3 2 1
35 35 H 1.09000 * 109.47594 * 54.99433 * 4 2 1
36 36 H 1.09009 * 109.47123 * 294.99284 * 4 2 1
37 37 H 1.08993 * 109.21949 * 278.41444 * 6 5 4
38 38 H 1.09000 * 109.21332 * 37.78489 * 6 5 4
39 39 H 1.09000 * 109.85213 * 287.31806 * 7 6 5
40 40 H 1.08994 * 109.83969 * 166.50547 * 7 6 5
41 41 H 1.09000 * 109.46842 * 270.00029 * 13 12 9
42 42 H 1.08994 * 109.47173 * 30.00563 * 13 12 9
43 43 H 1.08998 * 109.46730 * 150.00596 * 13 12 9
44 44 H 1.09002 * 109.47153 * 179.97438 * 16 14 12
45 45 H 1.09001 * 109.46832 * 60.00146 * 16 14 12
46 46 H 1.09004 * 109.47261 * 300.00128 * 16 14 12
47 47 H 0.97001 * 119.99599 * 179.97438 * 20 19 17
48 48 H 1.09001 * 109.56549 * 162.80890 * 25 8 7
49 49 H 1.08993 * 109.56426 * 283.04760 * 25 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 1.2491
5 7 3.5001 -0.8265 1.1904
6 6 4.0689 -2.0061 0.5530
7 6 5.5052 -1.7324 0.0866
8 7 6.2237 -1.0764 1.1920
9 16 7.5532 -1.7746 1.8901
10 8 8.3030 -0.7170 2.4720
11 8 8.0902 -2.6687 0.9249
12 7 7.0132 -2.7105 3.1451
13 6 6.8824 -2.1338 4.4855
14 6 6.6664 -4.1152 2.9150
15 1 6.8265 -4.3616 1.8654
16 6 7.5490 -5.0083 3.7894
17 6 5.2187 -4.3395 3.2681
18 1 4.6172 -3.5180 3.6283
19 6 4.6621 -5.5935 3.1313
20 7 3.3987 -5.7893 3.4399
21 14 5.7022 -7.0142 2.5076
22 1 6.3467 -7.6978 3.6577
23 1 4.8384 -7.9779 1.7797
24 1 6.7485 -6.4961 1.5901
25 6 5.7163 0.2268 1.6467
26 6 4.2152 0.1649 1.7240
27 8 3.6282 1.0579 2.2976
28 1 -0.3633 0.5138 0.8901
29 1 -0.3633 0.5139 -0.8899
30 1 -0.3634 -1.0276 0.0005
31 1 1.8932 -0.5138 -0.8901
32 1 1.6768 1.9563 0.8900
33 1 3.1301 1.4424 -0.0005
34 1 1.6766 1.9564 -0.8900
35 1 1.6054 -1.7199 1.2950
36 1 1.7518 -0.1584 2.1369
37 1 4.0716 -2.8321 1.2641
38 1 3.4595 -2.2771 -0.3091
39 1 5.4930 -1.0771 -0.7844
40 1 5.9974 -2.6716 -0.1660
41 1 7.8176 -2.2645 5.0300
42 1 6.6553 -1.0710 4.4031
43 1 6.0771 -2.6371 5.0204
44 1 7.2906 -6.0533 3.6185
45 1 7.3885 -4.7616 4.8389
46 1 8.5962 -4.8460 3.5340
47 1 3.0070 -6.6714 3.3433
48 1 6.1236 0.4534 2.6321
49 1 6.0157 1.0015 0.9409
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000407972164.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:33:25
Heat of formation + Delta-G solvation = -95.828160 kcal
Electronic energy + Delta-G solvation = -32019.090141 eV
Core-core repulsion = 27915.698797 eV
Total energy + Delta-G solvation = -4103.391344 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-40.42085 -37.06714 -36.57084 -36.48216 -36.31512 -35.51895 -33.50808 -32.62993
-30.14033 -29.90156 -27.50579 -27.13813 -25.82948 -25.16901 -25.00658 -23.44686
-20.98982 -20.26772 -19.26792 -18.22153 -17.61416 -17.24135 -17.14994 -16.60378
-16.02840 -15.73575 -15.61491 -14.97333 -14.63336 -14.39808 -14.18304 -13.78095
-13.58695 -13.35197 -13.13471 -12.86784 -12.82516 -12.59168 -12.43578 -12.28299
-12.21628 -12.18475 -12.05854 -11.85458 -11.79268 -11.64073 -11.55896 -11.32165
-11.18487 -11.08911 -11.03680 -10.89734 -10.67771 -10.63577 -10.23844 -10.03058
-9.65819 -9.51153 -8.92265 -8.76458 -8.41876 -8.20944 -6.27197 -4.29065
0.89948 2.75209 3.00562 3.15230 3.23924 3.28177 3.29470 3.83644
4.23158 4.49307 4.62317 4.77498 4.88027 4.93777 5.03662 5.06818
5.16706 5.24383 5.38047 5.43475 5.48238 5.56423 5.61979 5.66714
5.70437 5.85619 5.89536 5.94147 5.96348 6.01286 6.07639 6.08555
6.16982 6.24405 6.29006 6.34790 6.38052 6.41955 6.47760 6.57216
6.66074 6.79211 7.18948 7.24232 7.52130 7.64000 8.30336 8.31751
8.75834 9.33321 10.84182
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.010833 B = 0.005323 C = 0.004090
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2584.160710 B = 5258.614645 C = 6843.887264
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.110 4.110
3 C -0.136 4.136
4 C 0.109 3.891
5 N -0.585 5.585
6 C 0.087 3.913
7 C 0.113 3.887
8 N -1.011 6.011
9 S 2.783 3.217
10 O -0.986 6.986
11 O -0.976 6.976
12 N -0.982 5.982
13 C 0.104 3.896
14 C 0.238 3.762
15 H 0.056 0.944
16 C -0.159 4.159
17 C -0.528 4.528
18 H 0.084 0.916
19 C 0.079 3.921
20 N -0.889 5.889
21 Si 0.874 3.126
22 H -0.277 1.277
23 H -0.294 1.294
24 H -0.262 1.262
25 C 0.118 3.882
26 C 0.513 3.487
27 O -0.552 6.552
28 H 0.056 0.944
29 H 0.054 0.946
30 H 0.056 0.944
31 H 0.068 0.932
32 H 0.060 0.940
33 H 0.049 0.951
34 H 0.044 0.956
35 H 0.081 0.919
36 H 0.087 0.913
37 H 0.105 0.895
38 H 0.081 0.919
39 H 0.075 0.925
40 H 0.111 0.889
41 H 0.046 0.954
42 H 0.051 0.949
43 H 0.085 0.915
44 H 0.049 0.951
45 H 0.059 0.941
46 H 0.034 0.966
47 H 0.266 0.734
48 H 0.115 0.885
49 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.759 8.671 -6.898 11.107
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.129 4.129
3 C -0.193 4.193
4 C -0.014 4.014
5 N -0.316 5.316
6 C -0.037 4.037
7 C -0.013 4.013
8 N -0.850 5.850
9 S 2.793 3.207
10 O -0.970 6.970
11 O -0.960 6.960
12 N -0.824 5.824
13 C -0.042 4.042
14 C 0.134 3.866
15 H 0.073 0.927
16 C -0.218 4.218
17 C -0.566 4.566
18 H 0.102 0.898
19 C -0.125 4.125
20 N -0.526 5.526
21 Si 0.704 3.296
22 H -0.204 1.204
23 H -0.222 1.222
24 H -0.186 1.186
25 C -0.010 4.010
26 C 0.300 3.700
27 O -0.431 6.431
28 H 0.075 0.925
29 H 0.073 0.927
30 H 0.075 0.925
31 H 0.086 0.914
32 H 0.079 0.921
33 H 0.069 0.931
34 H 0.063 0.937
35 H 0.099 0.901
36 H 0.106 0.894
37 H 0.123 0.877
38 H 0.099 0.901
39 H 0.094 0.906
40 H 0.129 0.871
41 H 0.065 0.935
42 H 0.070 0.930
43 H 0.104 0.896
44 H 0.067 0.933
45 H 0.078 0.922
46 H 0.053 0.947
47 H 0.076 0.924
48 H 0.133 0.867
49 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges -0.260 9.115 -6.858 11.410
hybrid contribution 0.022 -1.131 -0.143 1.140
sum -0.238 7.984 -7.001 10.622
Atomic orbital electron populations
1.21757 0.94702 1.01858 1.01812 1.21478 0.95871 0.97057 0.98535
1.21787 1.00926 0.95445 1.01178 1.21655 0.79533 1.01406 0.98756
1.47034 1.06881 1.20722 1.56933 1.22112 0.93686 0.88548 0.99326
1.21820 0.91718 0.99302 0.88459 1.58548 1.49622 1.29307 1.47508
1.01928 0.73195 0.72584 0.73016 1.93567 1.68338 1.56729 1.78364
1.93576 1.76408 1.65079 1.60920 1.57530 1.82396 1.21874 1.20598
1.21265 1.02100 0.96734 0.84077 1.19107 0.95539 0.75612 0.96379
0.92676 1.22413 0.98103 0.99534 1.01711 1.21170 0.92831 0.96813
1.45832 0.89829 1.24868 0.94776 0.98285 0.94536 1.69875 1.12079
1.23186 1.47465 0.87068 0.80234 0.82835 0.79485 1.20351 1.22181
1.18629 1.21463 0.90736 0.85938 1.02902 1.20107 0.89982 0.81725
0.78192 1.90713 1.71013 1.37814 1.43556 0.92493 0.92713 0.92483
0.91363 0.92105 0.93145 0.93740 0.90091 0.89430 0.87706 0.90085
0.90630 0.87081 0.93541 0.93017 0.89617 0.93294 0.92240 0.94723
0.92409 0.86718 0.88269
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.38 9.19 37.16 0.34 -1.04 16
2 C -0.11 -1.23 3.13 -90.62 -0.28 -1.51 16
3 C -0.14 -1.62 7.91 37.16 0.29 -1.32 16
4 C 0.11 1.47 4.85 -4.05 -0.02 1.45 16
5 N -0.58 -8.41 2.72 -174.59 -0.47 -8.89 16
6 C 0.09 1.20 6.51 -4.26 -0.03 1.17 16
7 C 0.11 1.48 6.56 -3.38 -0.02 1.46 16
8 N -1.01 -15.09 3.36 -114.55 -0.38 -15.48 16
9 S 2.78 49.48 6.09 -107.50 -0.65 48.82 16
10 O -0.99 -18.54 16.18 -57.17 -0.92 -19.46 16
11 O -0.98 -19.35 15.40 -57.17 -0.88 -20.23 16
12 N -0.98 -18.43 3.12 -115.86 -0.36 -18.79 16
13 C 0.10 1.75 9.28 59.85 0.56 2.31 16
14 C 0.24 5.06 2.21 -69.08 -0.15 4.91 16
15 H 0.06 1.22 5.97 -51.93 -0.31 0.91 16
16 C -0.16 -3.22 8.68 37.16 0.32 -2.90 16
17 C -0.53 -12.56 7.95 -34.44 -0.27 -12.84 16
18 H 0.08 2.17 7.58 -52.49 -0.40 1.77 16
19 C 0.08 2.00 5.45 -17.82 -0.10 1.90 16
20 N -0.89 -24.03 13.96 55.43 0.77 -23.26 16
21 Si 0.87 19.79 24.38 -169.99 -4.14 15.64 16
22 H -0.28 -6.21 6.87 56.52 0.39 -5.82 16
23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16
24 H -0.26 -5.75 6.53 56.52 0.37 -5.38 16
25 C 0.12 1.65 6.41 -5.02 -0.03 1.62 16
26 C 0.51 7.91 5.98 -11.73 -0.07 7.84 16
27 O -0.55 -9.71 14.46 5.55 0.08 -9.63 16
28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16
29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16
31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
32 H 0.06 0.80 7.90 -51.93 -0.41 0.39 16
33 H 0.05 0.66 6.13 -51.93 -0.32 0.34 16
34 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16
35 H 0.08 1.07 8.01 -51.93 -0.42 0.66 16
36 H 0.09 1.32 7.10 -51.92 -0.37 0.95 16
37 H 0.10 1.80 7.51 -51.93 -0.39 1.41 16
38 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16
39 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16
40 H 0.11 1.51 7.06 -51.93 -0.37 1.14 16
41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
42 H 0.05 0.78 7.78 -51.93 -0.40 0.38 16
43 H 0.09 1.53 7.02 -51.93 -0.36 1.16 16
44 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16
45 H 0.06 1.15 7.67 -51.93 -0.40 0.75 16
46 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16
47 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16
48 H 0.11 1.60 7.48 -51.93 -0.39 1.22 16
49 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16
LS Contribution 384.41 15.07 5.79 5.79
Total: -1.00 -30.03 384.41 -8.75 -38.78
By element:
Atomic # 1 Polarization: 11.77 SS G_CDS: -8.11 Total: 3.66 kcal
Atomic # 6 Polarization: 2.50 SS G_CDS: 0.53 Total: 3.04 kcal
Atomic # 7 Polarization: -65.96 SS G_CDS: -0.45 Total: -66.41 kcal
Atomic # 8 Polarization: -47.60 SS G_CDS: -1.73 Total: -49.33 kcal
Atomic # 14 Polarization: 19.79 SS G_CDS: -4.14 Total: 15.64 kcal
Atomic # 16 Polarization: 49.48 SS G_CDS: -0.65 Total: 48.82 kcal
Total LS contribution 5.79 Total: 5.79 kcal
Total: -30.03 -8.75 -38.78 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000407972164.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -57.052 kcal
(2) G-P(sol) polarization free energy of solvation -30.028 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.079 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.777 kcal
(6) G-S(sol) free energy of system = (1) + (5) -95.828 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds