Wall clock time and date at job start Wed Apr 1 2020 05:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47244 * 2 1 4 4 C 1.52991 * 109.47217 * 120.00549 * 2 1 3 5 5 N 1.46499 * 109.47239 * 174.99717 * 4 2 1 6 6 C 1.45648 * 117.70769 * 270.01733 * 5 4 2 7 7 C 1.53466 * 110.74099 * 157.95209 * 6 5 4 8 8 N 1.47267 * 107.93194 * 46.91445 * 7 6 5 9 9 S 1.65604 * 121.35127 * 118.51118 * 8 7 6 10 10 O 1.42103 * 106.40360 * 156.17960 * 9 8 7 11 11 O 1.42101 * 106.40002 * 23.25689 * 9 8 7 12 12 N 1.65603 * 107.21689 * 269.71700 * 9 8 7 13 13 C 1.46499 * 119.99954 * 269.99863 * 12 9 8 14 14 C 1.46506 * 120.00110 * 90.00259 * 12 9 8 15 15 H 1.08998 * 109.46566 * 359.97438 * 14 12 9 16 16 C 1.52997 * 109.47289 * 119.99604 * 14 12 9 17 17 C 1.50697 * 109.47015 * 240.00062 * 14 12 9 18 18 H 1.07998 * 120.00039 * 359.97438 * 17 14 12 19 19 C 1.37880 * 119.99815 * 179.97438 * 17 14 12 20 20 N 1.31517 * 119.99524 * 179.97438 * 19 17 14 21 21 Si 1.86794 * 120.00267 * 359.97438 * 19 17 14 22 22 H 1.48506 * 109.46589 * 89.99875 * 21 19 17 23 23 H 1.48490 * 109.47303 * 209.99928 * 21 19 17 24 24 H 1.48497 * 109.46869 * 330.00523 * 21 19 17 25 25 C 1.47051 * 117.29556 * 298.24008 * 8 7 6 26 26 C 1.33385 * 117.70706 * 89.99592 * 5 4 2 27 27 O 1.21287 * 118.48742 * 4.32200 * 26 5 4 28 28 H 1.09004 * 109.46821 * 299.99705 * 1 2 3 29 29 H 1.08998 * 109.47195 * 59.99673 * 1 2 3 30 30 H 1.09001 * 109.47461 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46348 * 240.00486 * 2 1 3 32 32 H 1.08995 * 109.47227 * 60.00215 * 3 2 1 33 33 H 1.09000 * 109.47001 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47146 * 300.00679 * 3 2 1 35 35 H 1.09000 * 109.47594 * 54.99433 * 4 2 1 36 36 H 1.09009 * 109.47123 * 294.99284 * 4 2 1 37 37 H 1.08993 * 109.21949 * 278.41444 * 6 5 4 38 38 H 1.09000 * 109.21332 * 37.78489 * 6 5 4 39 39 H 1.09000 * 109.85213 * 287.31806 * 7 6 5 40 40 H 1.08994 * 109.83969 * 166.50547 * 7 6 5 41 41 H 1.09000 * 109.46842 * 270.00029 * 13 12 9 42 42 H 1.08994 * 109.47173 * 30.00563 * 13 12 9 43 43 H 1.08998 * 109.46730 * 150.00596 * 13 12 9 44 44 H 1.09002 * 109.47153 * 179.97438 * 16 14 12 45 45 H 1.09001 * 109.46832 * 60.00146 * 16 14 12 46 46 H 1.09004 * 109.47261 * 300.00128 * 16 14 12 47 47 H 0.97001 * 119.99599 * 179.97438 * 20 19 17 48 48 H 1.09001 * 109.56549 * 162.80890 * 25 8 7 49 49 H 1.08993 * 109.56426 * 283.04760 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.0689 -2.0061 0.5530 7 6 5.5052 -1.7324 0.0866 8 7 6.2237 -1.0764 1.1920 9 16 7.5532 -1.7746 1.8901 10 8 8.3030 -0.7170 2.4720 11 8 8.0902 -2.6687 0.9249 12 7 7.0132 -2.7105 3.1451 13 6 6.8824 -2.1338 4.4855 14 6 6.6664 -4.1152 2.9150 15 1 6.8265 -4.3616 1.8654 16 6 7.5490 -5.0083 3.7894 17 6 5.2187 -4.3395 3.2681 18 1 4.6172 -3.5180 3.6283 19 6 4.6621 -5.5935 3.1313 20 7 3.3987 -5.7893 3.4399 21 14 5.7022 -7.0142 2.5076 22 1 6.3467 -7.6978 3.6577 23 1 4.8384 -7.9779 1.7797 24 1 6.7485 -6.4961 1.5901 25 6 5.7163 0.2268 1.6467 26 6 4.2152 0.1649 1.7240 27 8 3.6282 1.0579 2.2976 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 1.6768 1.9563 0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6054 -1.7199 1.2950 36 1 1.7518 -0.1584 2.1369 37 1 4.0716 -2.8321 1.2641 38 1 3.4595 -2.2771 -0.3091 39 1 5.4930 -1.0771 -0.7844 40 1 5.9974 -2.6716 -0.1660 41 1 7.8176 -2.2645 5.0300 42 1 6.6553 -1.0710 4.4031 43 1 6.0771 -2.6371 5.0204 44 1 7.2906 -6.0533 3.6185 45 1 7.3885 -4.7616 4.8389 46 1 8.5962 -4.8460 3.5340 47 1 3.0070 -6.6714 3.3433 48 1 6.1236 0.4534 2.6321 49 1 6.0157 1.0015 0.9409 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407972164.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:25 Heat of formation + Delta-G solvation = -95.828160 kcal Electronic energy + Delta-G solvation = -32019.090141 eV Core-core repulsion = 27915.698797 eV Total energy + Delta-G solvation = -4103.391344 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.42085 -37.06714 -36.57084 -36.48216 -36.31512 -35.51895 -33.50808 -32.62993 -30.14033 -29.90156 -27.50579 -27.13813 -25.82948 -25.16901 -25.00658 -23.44686 -20.98982 -20.26772 -19.26792 -18.22153 -17.61416 -17.24135 -17.14994 -16.60378 -16.02840 -15.73575 -15.61491 -14.97333 -14.63336 -14.39808 -14.18304 -13.78095 -13.58695 -13.35197 -13.13471 -12.86784 -12.82516 -12.59168 -12.43578 -12.28299 -12.21628 -12.18475 -12.05854 -11.85458 -11.79268 -11.64073 -11.55896 -11.32165 -11.18487 -11.08911 -11.03680 -10.89734 -10.67771 -10.63577 -10.23844 -10.03058 -9.65819 -9.51153 -8.92265 -8.76458 -8.41876 -8.20944 -6.27197 -4.29065 0.89948 2.75209 3.00562 3.15230 3.23924 3.28177 3.29470 3.83644 4.23158 4.49307 4.62317 4.77498 4.88027 4.93777 5.03662 5.06818 5.16706 5.24383 5.38047 5.43475 5.48238 5.56423 5.61979 5.66714 5.70437 5.85619 5.89536 5.94147 5.96348 6.01286 6.07639 6.08555 6.16982 6.24405 6.29006 6.34790 6.38052 6.41955 6.47760 6.57216 6.66074 6.79211 7.18948 7.24232 7.52130 7.64000 8.30336 8.31751 8.75834 9.33321 10.84182 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010833 B = 0.005323 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.160710 B = 5258.614645 C = 6843.887264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 C -0.136 4.136 4 C 0.109 3.891 5 N -0.585 5.585 6 C 0.087 3.913 7 C 0.113 3.887 8 N -1.011 6.011 9 S 2.783 3.217 10 O -0.986 6.986 11 O -0.976 6.976 12 N -0.982 5.982 13 C 0.104 3.896 14 C 0.238 3.762 15 H 0.056 0.944 16 C -0.159 4.159 17 C -0.528 4.528 18 H 0.084 0.916 19 C 0.079 3.921 20 N -0.889 5.889 21 Si 0.874 3.126 22 H -0.277 1.277 23 H -0.294 1.294 24 H -0.262 1.262 25 C 0.118 3.882 26 C 0.513 3.487 27 O -0.552 6.552 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.111 0.889 41 H 0.046 0.954 42 H 0.051 0.949 43 H 0.085 0.915 44 H 0.049 0.951 45 H 0.059 0.941 46 H 0.034 0.966 47 H 0.266 0.734 48 H 0.115 0.885 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.759 8.671 -6.898 11.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.129 4.129 3 C -0.193 4.193 4 C -0.014 4.014 5 N -0.316 5.316 6 C -0.037 4.037 7 C -0.013 4.013 8 N -0.850 5.850 9 S 2.793 3.207 10 O -0.970 6.970 11 O -0.960 6.960 12 N -0.824 5.824 13 C -0.042 4.042 14 C 0.134 3.866 15 H 0.073 0.927 16 C -0.218 4.218 17 C -0.566 4.566 18 H 0.102 0.898 19 C -0.125 4.125 20 N -0.526 5.526 21 Si 0.704 3.296 22 H -0.204 1.204 23 H -0.222 1.222 24 H -0.186 1.186 25 C -0.010 4.010 26 C 0.300 3.700 27 O -0.431 6.431 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.123 0.877 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.129 0.871 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.104 0.896 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.053 0.947 47 H 0.076 0.924 48 H 0.133 0.867 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.260 9.115 -6.858 11.410 hybrid contribution 0.022 -1.131 -0.143 1.140 sum -0.238 7.984 -7.001 10.622 Atomic orbital electron populations 1.21757 0.94702 1.01858 1.01812 1.21478 0.95871 0.97057 0.98535 1.21787 1.00926 0.95445 1.01178 1.21655 0.79533 1.01406 0.98756 1.47034 1.06881 1.20722 1.56933 1.22112 0.93686 0.88548 0.99326 1.21820 0.91718 0.99302 0.88459 1.58548 1.49622 1.29307 1.47508 1.01928 0.73195 0.72584 0.73016 1.93567 1.68338 1.56729 1.78364 1.93576 1.76408 1.65079 1.60920 1.57530 1.82396 1.21874 1.20598 1.21265 1.02100 0.96734 0.84077 1.19107 0.95539 0.75612 0.96379 0.92676 1.22413 0.98103 0.99534 1.01711 1.21170 0.92831 0.96813 1.45832 0.89829 1.24868 0.94776 0.98285 0.94536 1.69875 1.12079 1.23186 1.47465 0.87068 0.80234 0.82835 0.79485 1.20351 1.22181 1.18629 1.21463 0.90736 0.85938 1.02902 1.20107 0.89982 0.81725 0.78192 1.90713 1.71013 1.37814 1.43556 0.92493 0.92713 0.92483 0.91363 0.92105 0.93145 0.93740 0.90091 0.89430 0.87706 0.90085 0.90630 0.87081 0.93541 0.93017 0.89617 0.93294 0.92240 0.94723 0.92409 0.86718 0.88269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.19 37.16 0.34 -1.04 16 2 C -0.11 -1.23 3.13 -90.62 -0.28 -1.51 16 3 C -0.14 -1.62 7.91 37.16 0.29 -1.32 16 4 C 0.11 1.47 4.85 -4.05 -0.02 1.45 16 5 N -0.58 -8.41 2.72 -174.59 -0.47 -8.89 16 6 C 0.09 1.20 6.51 -4.26 -0.03 1.17 16 7 C 0.11 1.48 6.56 -3.38 -0.02 1.46 16 8 N -1.01 -15.09 3.36 -114.55 -0.38 -15.48 16 9 S 2.78 49.48 6.09 -107.50 -0.65 48.82 16 10 O -0.99 -18.54 16.18 -57.17 -0.92 -19.46 16 11 O -0.98 -19.35 15.40 -57.17 -0.88 -20.23 16 12 N -0.98 -18.43 3.12 -115.86 -0.36 -18.79 16 13 C 0.10 1.75 9.28 59.85 0.56 2.31 16 14 C 0.24 5.06 2.21 -69.08 -0.15 4.91 16 15 H 0.06 1.22 5.97 -51.93 -0.31 0.91 16 16 C -0.16 -3.22 8.68 37.16 0.32 -2.90 16 17 C -0.53 -12.56 7.95 -34.44 -0.27 -12.84 16 18 H 0.08 2.17 7.58 -52.49 -0.40 1.77 16 19 C 0.08 2.00 5.45 -17.82 -0.10 1.90 16 20 N -0.89 -24.03 13.96 55.43 0.77 -23.26 16 21 Si 0.87 19.79 24.38 -169.99 -4.14 15.64 16 22 H -0.28 -6.21 6.87 56.52 0.39 -5.82 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.26 -5.75 6.53 56.52 0.37 -5.38 16 25 C 0.12 1.65 6.41 -5.02 -0.03 1.62 16 26 C 0.51 7.91 5.98 -11.73 -0.07 7.84 16 27 O -0.55 -9.71 14.46 5.55 0.08 -9.63 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.80 7.90 -51.93 -0.41 0.39 16 33 H 0.05 0.66 6.13 -51.93 -0.32 0.34 16 34 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 1.07 8.01 -51.93 -0.42 0.66 16 36 H 0.09 1.32 7.10 -51.92 -0.37 0.95 16 37 H 0.10 1.80 7.51 -51.93 -0.39 1.41 16 38 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.11 1.51 7.06 -51.93 -0.37 1.14 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.78 7.78 -51.93 -0.40 0.38 16 43 H 0.09 1.53 7.02 -51.93 -0.36 1.16 16 44 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16 45 H 0.06 1.15 7.67 -51.93 -0.40 0.75 16 46 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 48 H 0.11 1.60 7.48 -51.93 -0.39 1.22 16 49 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 384.41 15.07 5.79 5.79 Total: -1.00 -30.03 384.41 -8.75 -38.78 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -8.11 Total: 3.66 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 0.53 Total: 3.04 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: -0.45 Total: -66.41 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -1.73 Total: -49.33 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.14 Total: 15.64 kcal Atomic # 16 Polarization: 49.48 SS G_CDS: -0.65 Total: 48.82 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.03 -8.75 -38.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407972164.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.052 kcal (2) G-P(sol) polarization free energy of solvation -30.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds