Wall clock time and date at job start Wed Apr 1 2020 05:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47244 * 2 1 4 4 C 1.52991 * 109.47217 * 120.00549 * 2 1 3 5 5 N 1.46499 * 109.47239 * 174.99717 * 4 2 1 6 6 C 1.45648 * 117.70769 * 270.01733 * 5 4 2 7 7 C 1.53466 * 110.74099 * 157.95209 * 6 5 4 8 8 N 1.47267 * 107.93194 * 46.91445 * 7 6 5 9 9 S 1.65604 * 121.35127 * 118.51118 * 8 7 6 10 10 O 1.42103 * 106.40360 * 156.17960 * 9 8 7 11 11 O 1.42101 * 106.40002 * 23.25689 * 9 8 7 12 12 N 1.65603 * 107.21689 * 269.71700 * 9 8 7 13 13 C 1.46499 * 119.99954 * 269.99863 * 12 9 8 14 14 C 1.46506 * 120.00110 * 90.00259 * 12 9 8 15 15 H 1.08998 * 109.46566 * 359.97438 * 14 12 9 16 16 C 1.52997 * 109.47289 * 119.99604 * 14 12 9 17 17 C 1.50697 * 109.47015 * 240.00062 * 14 12 9 18 18 H 1.07998 * 120.00039 * 359.97438 * 17 14 12 19 19 C 1.37880 * 119.99815 * 179.97438 * 17 14 12 20 20 N 1.31517 * 119.99524 * 179.97438 * 19 17 14 21 21 Si 1.86794 * 120.00267 * 359.97438 * 19 17 14 22 22 H 1.48506 * 109.46589 * 89.99875 * 21 19 17 23 23 H 1.48490 * 109.47303 * 209.99928 * 21 19 17 24 24 H 1.48497 * 109.46869 * 330.00523 * 21 19 17 25 25 C 1.47051 * 117.29556 * 298.24008 * 8 7 6 26 26 C 1.33385 * 117.70706 * 89.99592 * 5 4 2 27 27 O 1.21287 * 118.48742 * 4.32200 * 26 5 4 28 28 H 1.09004 * 109.46821 * 299.99705 * 1 2 3 29 29 H 1.08998 * 109.47195 * 59.99673 * 1 2 3 30 30 H 1.09001 * 109.47461 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46348 * 240.00486 * 2 1 3 32 32 H 1.08995 * 109.47227 * 60.00215 * 3 2 1 33 33 H 1.09000 * 109.47001 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47146 * 300.00679 * 3 2 1 35 35 H 1.09000 * 109.47594 * 54.99433 * 4 2 1 36 36 H 1.09009 * 109.47123 * 294.99284 * 4 2 1 37 37 H 1.08993 * 109.21949 * 278.41444 * 6 5 4 38 38 H 1.09000 * 109.21332 * 37.78489 * 6 5 4 39 39 H 1.09000 * 109.85213 * 287.31806 * 7 6 5 40 40 H 1.08994 * 109.83969 * 166.50547 * 7 6 5 41 41 H 1.09000 * 109.46842 * 270.00029 * 13 12 9 42 42 H 1.08994 * 109.47173 * 30.00563 * 13 12 9 43 43 H 1.08998 * 109.46730 * 150.00596 * 13 12 9 44 44 H 1.09002 * 109.47153 * 179.97438 * 16 14 12 45 45 H 1.09001 * 109.46832 * 60.00146 * 16 14 12 46 46 H 1.09004 * 109.47261 * 300.00128 * 16 14 12 47 47 H 0.97001 * 119.99599 * 179.97438 * 20 19 17 48 48 H 1.09001 * 109.56549 * 162.80890 * 25 8 7 49 49 H 1.08993 * 109.56426 * 283.04760 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.0689 -2.0061 0.5530 7 6 5.5052 -1.7324 0.0866 8 7 6.2237 -1.0764 1.1920 9 16 7.5532 -1.7746 1.8901 10 8 8.3030 -0.7170 2.4720 11 8 8.0902 -2.6687 0.9249 12 7 7.0132 -2.7105 3.1451 13 6 6.8824 -2.1338 4.4855 14 6 6.6664 -4.1152 2.9150 15 1 6.8265 -4.3616 1.8654 16 6 7.5490 -5.0083 3.7894 17 6 5.2187 -4.3395 3.2681 18 1 4.6172 -3.5180 3.6283 19 6 4.6621 -5.5935 3.1313 20 7 3.3987 -5.7893 3.4399 21 14 5.7022 -7.0142 2.5076 22 1 6.3467 -7.6978 3.6577 23 1 4.8384 -7.9779 1.7797 24 1 6.7485 -6.4961 1.5901 25 6 5.7163 0.2268 1.6467 26 6 4.2152 0.1649 1.7240 27 8 3.6282 1.0579 2.2976 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 1.6768 1.9563 0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6054 -1.7199 1.2950 36 1 1.7518 -0.1584 2.1369 37 1 4.0716 -2.8321 1.2641 38 1 3.4595 -2.2771 -0.3091 39 1 5.4930 -1.0771 -0.7844 40 1 5.9974 -2.6716 -0.1660 41 1 7.8176 -2.2645 5.0300 42 1 6.6553 -1.0710 4.4031 43 1 6.0771 -2.6371 5.0204 44 1 7.2906 -6.0533 3.6185 45 1 7.3885 -4.7616 4.8389 46 1 8.5962 -4.8460 3.5340 47 1 3.0070 -6.6714 3.3433 48 1 6.1236 0.4534 2.6321 49 1 6.0157 1.0015 0.9409 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407972164.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:24 Heat of formation + Delta-G solvation = -116.915064 kcal Electronic energy + Delta-G solvation = -32020.004538 eV Core-core repulsion = 27915.698797 eV Total energy + Delta-G solvation = -4104.305741 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.60402 -38.53874 -38.07843 -37.79766 -37.36835 -36.99785 -34.58862 -34.48554 -31.80291 -31.05905 -28.64766 -28.02279 -27.31461 -26.96642 -26.12259 -24.59943 -22.65401 -21.24103 -20.57243 -19.47082 -19.07318 -18.71850 -18.43029 -18.27416 -17.25975 -17.14757 -16.89195 -16.48856 -15.81304 -15.52387 -15.36631 -15.28401 -14.90299 -14.64209 -14.59595 -14.18217 -14.12003 -13.92417 -13.86589 -13.75542 -13.54122 -13.44798 -13.28385 -13.17724 -13.08521 -12.98050 -12.85090 -12.71532 -12.68769 -12.34768 -12.24527 -12.09180 -11.98597 -11.82950 -11.60741 -11.46069 -11.37781 -11.13750 -10.70686 -10.11131 -9.77092 -9.59823 -8.23793 -6.26902 -0.49732 1.34925 1.43669 1.49812 1.53830 1.72627 2.01882 2.35060 2.44830 3.10731 3.17858 3.40926 3.62851 3.90946 3.91674 3.99407 4.11387 4.15019 4.17326 4.36994 4.37585 4.45566 4.57081 4.58126 4.62431 4.65004 4.68481 4.74258 4.81835 4.83468 4.88314 4.91180 4.98624 5.06041 5.08531 5.09871 5.17468 5.21337 5.24540 5.37310 5.45511 5.51161 5.53591 5.58059 5.84659 6.38472 6.46611 6.77609 7.10224 7.37592 8.90537 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010833 B = 0.005323 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.160710 B = 5258.614645 C = 6843.887264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 C -0.130 4.130 4 C 0.108 3.892 5 N -0.585 5.585 6 C 0.092 3.908 7 C 0.109 3.891 8 N -1.008 6.008 9 S 2.796 3.204 10 O -0.995 6.995 11 O -0.994 6.994 12 N -0.990 5.990 13 C 0.101 3.899 14 C 0.241 3.759 15 H 0.051 0.949 16 C -0.161 4.161 17 C -0.506 4.506 18 H 0.053 0.947 19 C 0.035 3.965 20 N -0.932 5.932 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.298 1.298 24 H -0.249 1.249 25 C 0.117 3.883 26 C 0.509 3.491 27 O -0.579 6.579 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.041 0.959 33 H 0.038 0.962 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.108 0.892 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.042 0.958 45 H 0.064 0.936 46 H 0.054 0.946 47 H 0.265 0.735 48 H 0.114 0.886 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.241 9.148 -8.559 12.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 C -0.187 4.187 4 C -0.015 4.015 5 N -0.315 5.315 6 C -0.032 4.032 7 C -0.016 4.016 8 N -0.849 5.849 9 S 2.806 3.194 10 O -0.979 6.979 11 O -0.979 6.979 12 N -0.831 5.831 13 C -0.044 4.044 14 C 0.135 3.865 15 H 0.069 0.931 16 C -0.220 4.220 17 C -0.545 4.545 18 H 0.071 0.929 19 C -0.164 4.164 20 N -0.571 5.571 21 Si 0.747 3.253 22 H -0.198 1.198 23 H -0.226 1.226 24 H -0.173 1.173 25 C -0.011 4.011 26 C 0.297 3.703 27 O -0.460 6.460 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.126 0.874 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.060 0.940 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.132 0.868 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.762 9.588 -8.515 12.846 hybrid contribution -0.338 -1.183 0.401 1.294 sum 0.424 8.405 -8.114 11.690 Atomic orbital electron populations 1.21737 0.93464 1.02314 1.02297 1.21424 0.96826 0.96369 0.97490 1.21717 1.00073 0.95819 1.01132 1.21703 0.79232 1.01240 0.99302 1.47127 1.07283 1.20523 1.56528 1.22051 0.95006 0.86972 0.99191 1.22049 0.90588 1.00014 0.88903 1.58335 1.49223 1.29625 1.47680 1.01432 0.73365 0.72109 0.72461 1.93553 1.69048 1.56684 1.78586 1.93548 1.77216 1.65756 1.61346 1.57540 1.82511 1.21203 1.21816 1.21362 1.02448 0.97283 0.83347 1.18908 0.93938 0.77384 0.96272 0.93094 1.22393 0.99042 0.98703 1.01840 1.21200 0.93968 0.95530 1.43837 0.92856 1.25439 0.95425 1.00473 0.95112 1.69993 1.13743 1.23598 1.49800 0.86321 0.79178 0.80409 0.79350 1.19808 1.22610 1.17307 1.21616 0.89541 0.86044 1.03851 1.20380 0.90618 0.81554 0.77772 1.90705 1.71597 1.38931 1.44748 0.93113 0.91130 0.92066 0.90024 0.93952 0.94324 0.91898 0.90343 0.91642 0.91650 0.87145 0.86932 0.87404 0.91780 0.91577 0.91231 0.93981 0.91699 0.92703 0.92612 0.86813 0.85240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.19 71.98 0.66 -1.83 16 2 C -0.10 -2.12 3.13 -10.80 -0.03 -2.16 16 3 C -0.13 -2.92 7.91 71.98 0.57 -2.35 16 4 C 0.11 2.89 4.85 86.38 0.42 3.31 16 5 N -0.58 -16.51 2.72 -825.45 -2.24 -18.75 16 6 C 0.09 2.43 6.51 86.70 0.56 2.99 16 7 C 0.11 2.64 6.56 86.39 0.57 3.21 16 8 N -1.01 -28.38 3.36 -516.31 -1.73 -30.12 16 9 S 2.80 94.97 6.09 -56.49 -0.34 94.63 16 10 O -0.99 -35.48 16.18 -128.00 -2.07 -37.55 16 11 O -0.99 -37.69 15.40 -128.00 -1.97 -39.66 16 12 N -0.99 -36.18 3.12 -520.46 -1.62 -37.81 16 13 C 0.10 3.32 9.28 127.77 1.19 4.51 16 14 C 0.24 10.01 2.21 44.24 0.10 10.11 16 15 H 0.05 2.19 5.97 -2.39 -0.01 2.18 16 16 C -0.16 -6.26 8.68 71.98 0.62 -5.64 16 17 C -0.51 -24.38 7.95 25.60 0.20 -24.18 16 18 H 0.05 2.86 7.58 -2.91 -0.02 2.84 16 19 C 0.04 1.79 5.45 84.65 0.46 2.25 16 20 N -0.93 -51.56 13.96 21.45 0.30 -51.26 16 21 Si 0.92 40.27 24.38 68.60 1.67 41.94 16 22 H -0.27 -11.62 6.87 99.48 0.68 -10.93 16 23 H -0.30 -13.18 7.11 99.48 0.71 -12.48 16 24 H -0.25 -10.32 6.53 99.48 0.65 -9.67 16 25 C 0.12 3.08 6.41 85.44 0.55 3.63 16 26 C 0.51 15.39 5.98 87.79 0.53 15.92 16 27 O -0.58 -20.43 14.46 -3.05 -0.04 -20.47 16 28 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.04 1.10 7.90 -2.39 -0.02 1.08 16 33 H 0.04 0.95 6.13 -2.39 -0.01 0.93 16 34 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.08 2.11 8.01 -2.39 -0.02 2.09 16 36 H 0.07 2.04 7.10 -2.38 -0.02 2.03 16 37 H 0.07 2.29 7.51 -2.39 -0.02 2.27 16 38 H 0.11 2.26 8.07 -2.39 -0.02 2.24 16 39 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.11 2.73 7.06 -2.39 -0.02 2.71 16 41 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.07 1.95 7.78 -2.39 -0.02 1.93 16 43 H 0.07 2.50 7.02 -2.39 -0.02 2.48 16 44 H 0.04 1.69 3.27 -2.39 -0.01 1.68 16 45 H 0.06 2.41 7.67 -2.39 -0.02 2.40 16 46 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 47 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 48 H 0.11 3.03 7.48 -2.39 -0.02 3.02 16 49 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -64.53 384.41 -0.81 -65.34 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.85 Total: 23.93 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 6.40 Total: 9.78 kcal Atomic # 7 Polarization: -132.63 SS G_CDS: -5.30 Total: -137.93 kcal Atomic # 8 Polarization: -93.60 SS G_CDS: -4.09 Total: -97.68 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 1.67 Total: 41.94 kcal Atomic # 16 Polarization: 94.97 SS G_CDS: -0.34 Total: 94.63 kcal Total: -64.53 -0.81 -65.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407972164.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.578 kcal (2) G-P(sol) polarization free energy of solvation -64.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds