Wall clock time and date at job start Wed Apr 1 2020 05:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 119.99489 * 2 1 4 4 N 1.34774 * 119.99902 * 179.97438 * 2 1 3 5 5 C 1.46504 * 119.99653 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.46887 * 179.97438 * 5 4 2 7 7 C 1.53042 * 109.45953 * 184.99834 * 6 5 4 8 8 C 1.53193 * 109.31009 * 178.61550 * 7 6 5 9 9 N 1.46925 * 108.77541 * 54.64458 * 8 7 6 10 10 S 1.65600 * 120.63343 * 126.36641 * 9 8 7 11 11 O 1.42095 * 106.40179 * 336.45754 * 10 9 8 12 12 O 1.42099 * 106.39829 * 203.53806 * 10 9 8 13 13 N 1.65594 * 107.21781 * 89.99863 * 10 9 8 14 14 C 1.46502 * 119.99875 * 269.99479 * 13 10 9 15 15 C 1.46500 * 120.00414 * 89.99807 * 13 10 9 16 16 H 1.09001 * 109.46596 * 0.02562 * 15 13 10 17 17 C 1.53006 * 109.47249 * 119.99671 * 15 13 10 18 18 C 1.50698 * 109.47583 * 240.00107 * 15 13 10 19 19 H 1.08004 * 119.99528 * 359.97438 * 18 15 13 20 20 C 1.37876 * 120.00356 * 180.02562 * 18 15 13 21 21 N 1.31518 * 119.99554 * 359.97438 * 20 18 15 22 22 Si 1.86790 * 120.00086 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.47385 * 59.99525 * 22 20 18 24 24 H 1.48500 * 109.47279 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47348 * 299.99599 * 22 20 18 26 26 C 1.46929 * 118.73258 * 306.63517 * 9 8 7 27 27 C 1.52761 * 109.00868 * 53.31393 * 26 9 8 28 28 H 1.08998 * 109.47151 * 239.99925 * 1 2 3 29 29 H 1.09000 * 109.47775 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46965 * 120.00605 * 1 2 3 31 31 H 0.96994 * 120.00060 * 0.02562 * 4 2 1 32 32 H 1.09002 * 109.46704 * 60.00296 * 5 4 2 33 33 H 1.08990 * 109.47089 * 300.00184 * 5 4 2 34 34 H 1.08999 * 109.45201 * 304.97058 * 6 5 4 35 35 H 1.08995 * 109.49367 * 58.67003 * 7 6 5 36 36 H 1.08995 * 109.52299 * 298.58528 * 7 6 5 37 37 H 1.08997 * 109.58979 * 294.85114 * 8 7 6 38 38 H 1.09000 * 109.70035 * 174.49512 * 8 7 6 39 39 H 1.08993 * 109.47565 * 270.00590 * 14 13 10 40 40 H 1.09007 * 109.46761 * 30.00623 * 14 13 10 41 41 H 1.09006 * 109.47241 * 150.00131 * 14 13 10 42 42 H 1.09001 * 109.47002 * 60.00085 * 17 15 13 43 43 H 1.08993 * 109.46955 * 180.02562 * 17 15 13 44 44 H 1.09000 * 109.47050 * 300.00351 * 17 15 13 45 45 H 0.97005 * 119.99198 * 180.02562 * 21 20 18 46 46 H 1.09005 * 109.58102 * 173.14885 * 26 9 8 47 47 H 1.08997 * 109.58842 * 293.56977 * 26 9 8 48 48 H 1.09002 * 109.56601 * 185.54686 * 27 26 9 49 49 H 1.09000 * 109.35959 * 65.49741 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0000 6 6 4.1559 -2.6096 0.0014 7 6 5.6812 -2.6110 0.1265 8 6 6.1853 -4.0572 0.1624 9 7 5.6763 -4.7648 -1.0204 10 16 6.7118 -5.5642 -2.0359 11 8 7.9875 -4.9626 -1.8629 12 8 6.0558 -5.6473 -3.2936 13 7 6.8469 -7.1165 -1.4754 14 6 7.8873 -7.4557 -0.5013 15 6 5.9262 -8.1508 -1.9537 16 1 5.2284 -7.7138 -2.6680 17 6 6.7216 -9.2660 -2.6355 18 6 5.1609 -8.7206 -0.7873 19 1 5.3425 -8.3496 0.2107 20 6 4.2296 -9.7161 -0.9938 21 7 4.0089 -10.1681 -2.2090 22 14 3.2815 -10.4227 0.4521 23 1 2.5092 -9.3407 1.1141 24 1 2.3481 -11.4710 -0.0327 25 1 4.2329 -11.0179 1.4246 26 6 4.2318 -4.7447 -1.2883 27 6 3.7490 -3.2955 -1.3048 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3635 1.0276 -0.0005 30 1 -0.3633 -0.5140 -0.8900 31 1 1.6959 -2.0072 0.0005 32 1 4.0095 -0.6527 0.8895 33 1 4.0088 -0.6539 -0.8904 34 1 3.7219 -3.1473 0.8443 35 1 5.9712 -2.1018 1.0455 36 1 6.1173 -2.0948 -0.7287 37 1 5.8233 -4.5480 1.0658 38 1 7.2752 -4.0668 0.1530 39 1 8.7920 -7.7605 -1.0272 40 1 8.1029 -6.5849 0.1179 41 1 7.5410 -8.2739 0.1302 42 1 7.4197 -9.7030 -1.9216 43 1 6.0365 -10.0353 -2.9917 44 1 7.2751 -8.8539 -3.4792 45 1 3.3534 -10.8682 -2.3544 46 1 4.0333 -5.2057 -2.2559 47 1 3.7073 -5.2928 -0.5057 48 1 2.6638 -3.2734 -1.4046 49 1 4.2029 -2.7730 -2.1469 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407973717.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:17 Heat of formation + Delta-G solvation = -124.067918 kcal Electronic energy + Delta-G solvation = -30408.962900 eV Core-core repulsion = 26304.346988 eV Total energy + Delta-G solvation = -4104.615912 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.95407 -38.57960 -36.78859 -36.15795 -35.31103 -35.21785 -32.64310 -32.57053 -31.07792 -30.10030 -29.11242 -26.60454 -25.51883 -25.22276 -23.40021 -22.61743 -20.85386 -20.74804 -20.24810 -18.41745 -17.40862 -16.95349 -16.83220 -16.45029 -16.29851 -15.80118 -15.59132 -14.93874 -14.61706 -14.31025 -14.24937 -13.93209 -13.75341 -13.51355 -13.25942 -13.17207 -12.92056 -12.79464 -12.74228 -12.39794 -12.14143 -12.02943 -11.82174 -11.63132 -11.55139 -11.42209 -11.25217 -11.16129 -11.01775 -11.00475 -10.92145 -10.64263 -10.48535 -10.42847 -10.25439 -10.11124 -10.09301 -9.34999 -9.30049 -8.77087 -8.53328 -7.98204 -6.14475 -4.23238 1.17683 2.41749 3.00468 3.19767 3.26785 3.26897 3.42001 4.05764 4.29918 4.46616 4.58979 4.59795 4.64872 4.86761 4.96136 5.05774 5.13756 5.15788 5.20357 5.34276 5.39696 5.42793 5.46539 5.58406 5.60260 5.67475 5.75639 5.86405 5.90218 5.92991 6.07635 6.14764 6.18323 6.26250 6.34850 6.39895 6.61346 6.78067 6.84582 6.91173 7.08373 7.25756 7.46330 7.57782 7.73452 7.98705 8.00634 8.21463 8.79768 9.43092 10.90401 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011505 B = 0.003403 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.174609 B = 8226.309302 C = 9753.259226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.508 3.492 3 O -0.551 6.551 4 N -0.730 5.730 5 C 0.123 3.877 6 C -0.097 4.097 7 C -0.122 4.122 8 C 0.122 3.878 9 N -1.005 6.005 10 S 2.780 3.220 11 O -0.997 6.997 12 O -0.980 6.980 13 N -0.991 5.991 14 C 0.108 3.892 15 C 0.269 3.731 16 H 0.057 0.943 17 C -0.145 4.145 18 C -0.526 4.526 19 H 0.062 0.938 20 C 0.065 3.935 21 N -0.887 5.887 22 Si 0.897 3.103 23 H -0.278 1.278 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.124 3.876 27 C -0.127 4.127 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.403 0.597 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.042 0.958 40 H 0.048 0.952 41 H 0.079 0.921 42 H 0.032 0.968 43 H 0.092 0.908 44 H 0.012 0.988 45 H 0.264 0.736 46 H 0.095 0.905 47 H 0.071 0.929 48 H 0.071 0.929 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.379 12.669 6.327 14.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.295 3.705 3 O -0.429 6.429 4 N -0.382 5.382 5 C -0.001 4.001 6 C -0.116 4.116 7 C -0.162 4.162 8 C -0.004 4.004 9 N -0.844 5.844 10 S 2.791 3.209 11 O -0.981 6.981 12 O -0.964 6.964 13 N -0.833 5.833 14 C -0.039 4.039 15 C 0.166 3.834 16 H 0.075 0.925 17 C -0.205 4.205 18 C -0.565 4.565 19 H 0.080 0.920 20 C -0.138 4.138 21 N -0.525 5.525 22 Si 0.724 3.276 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.002 4.002 27 C -0.166 4.166 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.237 0.763 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.097 0.903 42 H 0.051 0.949 43 H 0.111 0.889 44 H 0.031 0.969 45 H 0.074 0.926 46 H 0.113 0.887 47 H 0.090 0.910 48 H 0.090 0.910 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.607 13.646 5.446 14.922 hybrid contribution -1.009 -1.156 1.174 1.932 sum -3.616 12.490 6.620 14.591 Atomic orbital electron populations 1.21927 0.91734 1.05472 1.04360 1.20821 0.90648 0.83474 0.75534 1.90723 1.70991 1.31509 1.49676 1.46116 1.07722 1.08840 1.75560 1.21449 0.79342 0.96941 1.02370 1.21372 0.96644 0.94441 0.99184 1.21827 0.94287 0.97287 1.02792 1.21317 0.99423 0.91454 0.88170 1.58221 1.18254 1.67114 1.40785 1.01885 0.72658 0.72787 0.73578 1.93521 1.40466 1.77112 1.87013 1.93565 1.76370 1.86818 1.39607 1.57784 1.42705 1.25862 1.56955 1.21165 0.89774 1.01024 0.91906 1.18706 0.86014 0.84351 0.94361 0.92491 1.22059 0.99653 1.01268 0.97507 1.21330 1.21025 1.20305 0.93847 0.92007 1.24919 0.96789 0.96321 0.95752 1.69877 1.34088 1.28560 1.19927 0.86599 0.79714 0.78764 0.82486 1.20333 1.21263 1.20302 1.21257 0.79834 0.95988 1.03105 1.21901 1.00808 0.96619 0.97311 0.89395 0.89072 0.89297 0.76258 0.91455 0.91380 0.90058 0.90648 0.91132 0.91495 0.89188 0.93955 0.93346 0.90252 0.94891 0.88915 0.96928 0.92564 0.88652 0.91017 0.91008 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.04 10.32 36.01 0.37 -0.67 16 2 C 0.51 5.10 7.94 -10.99 -0.09 5.01 16 3 O -0.55 -8.12 17.09 5.56 0.09 -8.02 16 4 N -0.73 -6.11 5.27 -60.29 -0.32 -6.42 16 5 C 0.12 1.15 5.06 -4.04 -0.02 1.13 16 6 C -0.10 -0.90 2.19 -90.58 -0.20 -1.09 16 7 C -0.12 -1.22 5.36 -26.61 -0.14 -1.36 16 8 C 0.12 1.49 6.48 -3.71 -0.02 1.46 16 9 N -1.01 -15.30 3.35 -113.76 -0.38 -15.68 16 10 S 2.78 53.25 6.10 -107.50 -0.66 52.59 16 11 O -1.00 -19.89 15.80 -57.17 -0.90 -20.79 16 12 O -0.98 -21.72 15.28 -57.17 -0.87 -22.60 16 13 N -0.99 -19.98 3.12 -115.84 -0.36 -20.34 16 14 C 0.11 1.87 9.28 59.85 0.56 2.43 16 15 C 0.27 6.34 2.62 -69.08 -0.18 6.16 16 16 H 0.06 1.49 6.91 -51.93 -0.36 1.13 16 17 C -0.15 -3.40 8.97 37.16 0.33 -3.07 16 18 C -0.53 -12.90 7.99 -34.44 -0.28 -13.18 16 19 H 0.06 1.48 7.33 -52.48 -0.38 1.09 16 20 C 0.07 1.64 5.30 -17.82 -0.09 1.55 16 21 N -0.89 -23.55 11.32 55.43 0.63 -22.93 16 22 Si 0.90 19.58 29.54 -169.99 -5.02 14.56 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 C 0.12 1.74 6.45 -3.93 -0.03 1.71 16 27 C -0.13 -1.36 5.23 -26.83 -0.14 -1.50 16 28 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.57 8.12 -51.93 -0.42 0.15 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.40 2.43 7.65 -40.82 -0.31 2.11 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.09 1.12 6.92 -51.93 -0.36 0.76 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.72 7.79 -51.92 -0.40 0.31 16 41 H 0.08 1.40 7.02 -51.93 -0.36 1.03 16 42 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 43 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 44 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 46 H 0.10 1.54 6.91 -51.93 -0.36 1.18 16 47 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 48 H 0.07 0.62 7.15 -51.93 -0.37 0.25 16 49 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 396.93 15.07 5.98 5.98 Total: -1.00 -32.80 396.93 -10.00 -42.79 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -8.26 Total: 2.27 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 0.07 Total: -1.42 kcal Atomic # 7 Polarization: -64.94 SS G_CDS: -0.43 Total: -65.37 kcal Atomic # 8 Polarization: -49.73 SS G_CDS: -1.68 Total: -51.41 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Atomic # 16 Polarization: 53.25 SS G_CDS: -0.66 Total: 52.59 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.80 -10.00 -42.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407973717.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.274 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds