Wall clock time and date at job start Wed Apr 1 2020 05:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 119.99489 * 2 1 4 4 N 1.34774 * 119.99902 * 179.97438 * 2 1 3 5 5 C 1.46504 * 119.99653 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.46887 * 179.97438 * 5 4 2 7 7 C 1.53042 * 109.45953 * 184.99834 * 6 5 4 8 8 C 1.53193 * 109.31009 * 178.61550 * 7 6 5 9 9 N 1.46925 * 108.77541 * 54.64458 * 8 7 6 10 10 S 1.65600 * 120.63343 * 126.36641 * 9 8 7 11 11 O 1.42095 * 106.40179 * 336.45754 * 10 9 8 12 12 O 1.42099 * 106.39829 * 203.53806 * 10 9 8 13 13 N 1.65594 * 107.21781 * 89.99863 * 10 9 8 14 14 C 1.46502 * 119.99875 * 269.99479 * 13 10 9 15 15 C 1.46500 * 120.00414 * 89.99807 * 13 10 9 16 16 H 1.09001 * 109.46596 * 0.02562 * 15 13 10 17 17 C 1.53006 * 109.47249 * 119.99671 * 15 13 10 18 18 C 1.50698 * 109.47583 * 240.00107 * 15 13 10 19 19 H 1.08004 * 119.99528 * 359.97438 * 18 15 13 20 20 C 1.37876 * 120.00356 * 180.02562 * 18 15 13 21 21 N 1.31518 * 119.99554 * 359.97438 * 20 18 15 22 22 Si 1.86790 * 120.00086 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.47385 * 59.99525 * 22 20 18 24 24 H 1.48500 * 109.47279 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47348 * 299.99599 * 22 20 18 26 26 C 1.46929 * 118.73258 * 306.63517 * 9 8 7 27 27 C 1.52761 * 109.00868 * 53.31393 * 26 9 8 28 28 H 1.08998 * 109.47151 * 239.99925 * 1 2 3 29 29 H 1.09000 * 109.47775 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46965 * 120.00605 * 1 2 3 31 31 H 0.96994 * 120.00060 * 0.02562 * 4 2 1 32 32 H 1.09002 * 109.46704 * 60.00296 * 5 4 2 33 33 H 1.08990 * 109.47089 * 300.00184 * 5 4 2 34 34 H 1.08999 * 109.45201 * 304.97058 * 6 5 4 35 35 H 1.08995 * 109.49367 * 58.67003 * 7 6 5 36 36 H 1.08995 * 109.52299 * 298.58528 * 7 6 5 37 37 H 1.08997 * 109.58979 * 294.85114 * 8 7 6 38 38 H 1.09000 * 109.70035 * 174.49512 * 8 7 6 39 39 H 1.08993 * 109.47565 * 270.00590 * 14 13 10 40 40 H 1.09007 * 109.46761 * 30.00623 * 14 13 10 41 41 H 1.09006 * 109.47241 * 150.00131 * 14 13 10 42 42 H 1.09001 * 109.47002 * 60.00085 * 17 15 13 43 43 H 1.08993 * 109.46955 * 180.02562 * 17 15 13 44 44 H 1.09000 * 109.47050 * 300.00351 * 17 15 13 45 45 H 0.97005 * 119.99198 * 180.02562 * 21 20 18 46 46 H 1.09005 * 109.58102 * 173.14885 * 26 9 8 47 47 H 1.08997 * 109.58842 * 293.56977 * 26 9 8 48 48 H 1.09002 * 109.56601 * 185.54686 * 27 26 9 49 49 H 1.09000 * 109.35959 * 65.49741 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0000 6 6 4.1559 -2.6096 0.0014 7 6 5.6812 -2.6110 0.1265 8 6 6.1853 -4.0572 0.1624 9 7 5.6763 -4.7648 -1.0204 10 16 6.7118 -5.5642 -2.0359 11 8 7.9875 -4.9626 -1.8629 12 8 6.0558 -5.6473 -3.2936 13 7 6.8469 -7.1165 -1.4754 14 6 7.8873 -7.4557 -0.5013 15 6 5.9262 -8.1508 -1.9537 16 1 5.2284 -7.7138 -2.6680 17 6 6.7216 -9.2660 -2.6355 18 6 5.1609 -8.7206 -0.7873 19 1 5.3425 -8.3496 0.2107 20 6 4.2296 -9.7161 -0.9938 21 7 4.0089 -10.1681 -2.2090 22 14 3.2815 -10.4227 0.4521 23 1 2.5092 -9.3407 1.1141 24 1 2.3481 -11.4710 -0.0327 25 1 4.2329 -11.0179 1.4246 26 6 4.2318 -4.7447 -1.2883 27 6 3.7490 -3.2955 -1.3048 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3635 1.0276 -0.0005 30 1 -0.3633 -0.5140 -0.8900 31 1 1.6959 -2.0072 0.0005 32 1 4.0095 -0.6527 0.8895 33 1 4.0088 -0.6539 -0.8904 34 1 3.7219 -3.1473 0.8443 35 1 5.9712 -2.1018 1.0455 36 1 6.1173 -2.0948 -0.7287 37 1 5.8233 -4.5480 1.0658 38 1 7.2752 -4.0668 0.1530 39 1 8.7920 -7.7605 -1.0272 40 1 8.1029 -6.5849 0.1179 41 1 7.5410 -8.2739 0.1302 42 1 7.4197 -9.7030 -1.9216 43 1 6.0365 -10.0353 -2.9917 44 1 7.2751 -8.8539 -3.4792 45 1 3.3534 -10.8682 -2.3544 46 1 4.0333 -5.2057 -2.2559 47 1 3.7073 -5.2928 -0.5057 48 1 2.6638 -3.2734 -1.4046 49 1 4.2029 -2.7730 -2.1469 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407973717.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:15 Heat of formation + Delta-G solvation = -147.999790 kcal Electronic energy + Delta-G solvation = -30410.000664 eV Core-core repulsion = 26304.346988 eV Total energy + Delta-G solvation = -4105.653676 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.76493 -39.53091 -38.40117 -37.85992 -36.89890 -36.16874 -34.48095 -33.48190 -32.04934 -30.91726 -30.71607 -27.48690 -27.21767 -26.96146 -24.36916 -23.57356 -22.53683 -21.63034 -21.19109 -19.76179 -18.76630 -18.45129 -18.26016 -17.72001 -17.22215 -17.06932 -16.57991 -16.47082 -15.70916 -15.47284 -15.21376 -15.13435 -15.02126 -14.75262 -14.53589 -14.42847 -14.13632 -13.77996 -13.70311 -13.46082 -13.41779 -13.28769 -13.17870 -12.97568 -12.95158 -12.93550 -12.77926 -12.72709 -12.65518 -12.21080 -12.12509 -12.11344 -11.88581 -11.87684 -11.54644 -11.41057 -11.14993 -10.93032 -10.46561 -10.07632 -9.96535 -9.61613 -8.05955 -6.21137 -0.32177 1.49030 1.50697 1.57681 1.67370 2.00294 2.34019 2.47948 2.57489 3.22480 3.36371 3.63017 3.72514 3.84543 3.97618 4.09157 4.19685 4.22557 4.43980 4.49869 4.53547 4.59060 4.67889 4.70024 4.72351 4.78592 4.79492 4.86051 4.87704 4.95512 4.99571 5.02674 5.03283 5.13828 5.15995 5.17397 5.26006 5.33046 5.40976 5.53268 5.58979 5.64737 5.79355 5.90421 6.12799 6.31276 6.60228 6.87919 7.29027 7.48693 8.98490 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011505 B = 0.003403 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.174609 B = 8226.309302 C = 9753.259226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.502 3.498 3 O -0.606 6.606 4 N -0.719 5.719 5 C 0.128 3.872 6 C -0.085 4.085 7 C -0.121 4.121 8 C 0.115 3.885 9 N -1.001 6.001 10 S 2.790 3.210 11 O -1.007 7.007 12 O -1.017 7.017 13 N -0.999 5.999 14 C 0.101 3.899 15 C 0.275 3.725 16 H 0.024 0.976 17 C -0.140 4.140 18 C -0.526 4.526 19 H 0.070 0.930 20 C 0.018 3.982 21 N -0.919 5.919 22 Si 0.959 3.041 23 H -0.266 1.266 24 H -0.292 1.292 25 H -0.273 1.273 26 C 0.120 3.880 27 C -0.122 4.122 28 H 0.112 0.888 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.417 0.583 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.047 0.953 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.042 0.958 43 H 0.070 0.930 44 H 0.015 0.985 45 H 0.263 0.737 46 H 0.066 0.934 47 H 0.080 0.920 48 H 0.095 0.905 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.360 13.152 8.947 16.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.291 3.709 3 O -0.488 6.488 4 N -0.372 5.372 5 C 0.004 3.996 6 C -0.104 4.104 7 C -0.161 4.161 8 C -0.010 4.010 9 N -0.842 5.842 10 S 2.801 3.199 11 O -0.990 6.990 12 O -1.001 7.001 13 N -0.840 5.840 14 C -0.044 4.044 15 C 0.171 3.829 16 H 0.042 0.958 17 C -0.200 4.200 18 C -0.566 4.566 19 H 0.088 0.912 20 C -0.182 4.182 21 N -0.558 5.558 22 Si 0.785 3.215 23 H -0.191 1.191 24 H -0.218 1.218 25 H -0.198 1.198 26 C -0.005 4.005 27 C -0.161 4.161 28 H 0.130 0.870 29 H 0.105 0.895 30 H 0.127 0.873 31 H 0.254 0.746 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.061 0.939 43 H 0.089 0.911 44 H 0.034 0.966 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.099 0.901 48 H 0.114 0.886 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.573 14.100 8.080 16.639 hybrid contribution -0.663 -1.274 0.345 1.477 sum -4.237 12.826 8.425 15.919 Atomic orbital electron populations 1.21935 0.88422 1.05913 1.06414 1.21574 0.92284 0.82849 0.74235 1.90701 1.72335 1.33413 1.52345 1.46063 1.07384 1.09264 1.74503 1.21309 0.80039 0.96683 1.01617 1.21274 0.96217 0.94184 0.98728 1.21844 0.94682 0.95790 1.03747 1.21625 0.99462 0.92583 0.87334 1.57959 1.18313 1.66572 1.41392 1.01380 0.72569 0.72654 0.73301 1.93499 1.41308 1.77060 1.87177 1.93512 1.77033 1.87257 1.42331 1.57703 1.42954 1.25653 1.57658 1.21355 0.89110 1.02263 0.91683 1.18369 0.86107 0.84743 0.93718 0.95791 1.21965 0.99320 1.00843 0.97877 1.21555 1.20802 1.19982 0.94232 0.91186 1.25676 0.97782 0.96788 0.97933 1.70023 1.34777 1.29135 1.21894 0.85606 0.78382 0.78061 0.79496 1.19112 1.21810 1.19792 1.21352 0.79111 0.98160 1.01864 1.21875 1.02124 0.94189 0.97901 0.86999 0.89544 0.87322 0.74590 0.91459 0.93040 0.88204 0.87963 0.92249 0.89478 0.89479 0.93432 0.90635 0.90468 0.93869 0.91125 0.96606 0.92795 0.91543 0.90145 0.88620 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 10.32 71.24 0.74 -0.82 16 2 C 0.50 9.25 7.94 87.66 0.70 9.95 16 3 O -0.61 -17.67 17.09 -3.02 -0.05 -17.72 16 4 N -0.72 -10.32 5.27 -463.06 -2.44 -12.76 16 5 C 0.13 2.15 5.06 86.38 0.44 2.59 16 6 C -0.09 -1.34 2.19 -10.77 -0.02 -1.36 16 7 C -0.12 -2.11 5.36 30.67 0.16 -1.95 16 8 C 0.11 2.52 6.48 86.36 0.56 3.08 16 9 N -1.00 -29.53 3.35 -513.84 -1.72 -31.25 16 10 S 2.79 107.27 6.10 -56.49 -0.34 106.92 16 11 O -1.01 -39.64 15.80 -128.00 -2.02 -41.66 16 12 O -1.02 -46.75 15.28 -128.00 -1.96 -48.71 16 13 N -1.00 -40.02 3.12 -520.42 -1.62 -41.65 16 14 C 0.10 3.38 9.28 127.77 1.19 4.57 16 15 C 0.27 13.15 2.62 44.25 0.12 13.27 16 16 H 0.02 1.31 6.91 -2.39 -0.02 1.30 16 17 C -0.14 -6.69 8.97 71.98 0.65 -6.05 16 18 C -0.53 -25.58 7.99 25.60 0.20 -25.37 16 19 H 0.07 3.22 7.33 -2.91 -0.02 3.20 16 20 C 0.02 0.90 5.30 84.65 0.45 1.35 16 21 N -0.92 -49.55 11.32 21.45 0.24 -49.31 16 22 Si 0.96 39.36 29.54 68.60 2.03 41.38 16 23 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 24 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 26 C 0.12 3.28 6.45 86.22 0.56 3.84 16 27 C -0.12 -2.41 5.23 30.53 0.16 -2.25 16 28 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.09 0.92 8.12 -2.39 -0.02 0.90 16 30 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.42 3.61 7.65 -92.71 -0.71 2.90 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.09 1.99 6.92 -2.39 -0.02 1.97 16 39 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.08 2.07 7.79 -2.38 -0.02 2.06 16 41 H 0.08 2.60 7.02 -2.38 -0.02 2.58 16 42 H 0.04 1.90 7.67 -2.39 -0.02 1.88 16 43 H 0.07 3.69 6.07 -2.39 -0.01 3.67 16 44 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.26 13.59 8.31 -92.70 -0.77 12.82 16 46 H 0.07 2.21 6.91 -2.38 -0.02 2.19 16 47 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.10 1.43 7.15 -2.39 -0.02 1.41 16 49 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -72.57 396.93 -1.78 -74.35 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.23 Total: 19.58 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 5.89 Total: 0.83 kcal Atomic # 7 Polarization: -129.43 SS G_CDS: -5.55 Total: -134.97 kcal Atomic # 8 Polarization: -104.06 SS G_CDS: -4.03 Total: -108.09 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.38 kcal Atomic # 16 Polarization: 107.27 SS G_CDS: -0.34 Total: 106.92 kcal Total: -72.57 -1.78 -74.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407973717.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.653 kcal (2) G-P(sol) polarization free energy of solvation -72.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds