Wall clock time and date at job start Wed Apr 1 2020 05:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46640 * 2 1 4 4 C 1.52997 * 109.47240 * 120.00355 * 2 1 3 5 5 C 1.53000 * 109.46998 * 64.40282 * 4 2 1 6 6 H 1.08997 * 109.56884 * 305.90539 * 5 4 2 7 7 C 1.50439 * 109.56800 * 66.14865 * 5 4 2 8 8 O 1.21286 * 118.48595 * 287.20712 * 7 5 4 9 9 N 1.33371 * 123.02581 * 107.23069 * 7 5 4 10 10 C 1.45648 * 124.58865 * 4.31970 * 9 7 5 11 11 C 1.52984 * 110.77565 * 338.09774 * 10 9 7 12 12 N 1.47056 * 109.66371 * 185.60879 * 5 4 2 13 13 S 1.65603 * 121.34877 * 102.83535 * 12 5 4 14 14 O 1.42096 * 106.39927 * 208.01498 * 13 12 5 15 15 O 1.42098 * 106.40396 * 340.94073 * 13 12 5 16 16 N 1.65601 * 107.21380 * 94.47845 * 13 12 5 17 17 C 1.46500 * 120.00163 * 269.99251 * 16 13 12 18 18 C 1.46497 * 120.00009 * 90.00176 * 16 13 12 19 19 H 1.09001 * 109.47150 * 359.97438 * 18 16 13 20 20 C 1.53001 * 109.47337 * 119.99392 * 18 16 13 21 21 C 1.50701 * 109.47077 * 239.99463 * 18 16 13 22 22 H 1.08003 * 119.99985 * 359.97438 * 21 18 16 23 23 C 1.37878 * 120.00333 * 179.97438 * 21 18 16 24 24 N 1.31507 * 120.00307 * 180.02562 * 23 21 18 25 25 Si 1.86803 * 119.99681 * 0.02562 * 23 21 18 26 26 H 1.48504 * 109.47139 * 89.99790 * 25 23 21 27 27 H 1.48502 * 109.46994 * 209.99700 * 25 23 21 28 28 H 1.48494 * 109.47166 * 329.99857 * 25 23 21 29 29 H 1.09002 * 109.46700 * 173.94606 * 1 2 3 30 30 H 1.08995 * 109.46979 * 293.94795 * 1 2 3 31 31 H 1.09000 * 109.47055 * 53.94873 * 1 2 3 32 32 H 1.09008 * 109.46907 * 240.00730 * 2 1 3 33 33 H 1.09010 * 109.46453 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47510 * 300.00068 * 3 2 1 35 35 H 1.08998 * 109.46852 * 60.00579 * 3 2 1 36 36 H 1.08996 * 109.46706 * 304.40647 * 4 2 1 37 37 H 1.08994 * 109.46910 * 184.40273 * 4 2 1 38 38 H 0.97005 * 117.70971 * 184.29288 * 9 7 5 39 39 H 1.08998 * 109.21596 * 98.43621 * 10 9 7 40 40 H 1.09004 * 109.21478 * 217.80476 * 10 9 7 41 41 H 1.08990 * 109.72189 * 166.40207 * 11 10 9 42 42 H 1.09002 * 109.71747 * 287.00956 * 11 10 9 43 43 H 1.08998 * 109.46940 * 90.00466 * 17 16 13 44 44 H 1.08995 * 109.47572 * 210.00340 * 17 16 13 45 45 H 1.09000 * 109.47168 * 330.00705 * 17 16 13 46 46 H 1.09007 * 109.46712 * 60.00195 * 20 18 16 47 47 H 1.09000 * 109.46974 * 179.97438 * 20 18 16 48 48 H 1.08994 * 109.47186 * 299.99996 * 20 18 16 49 49 H 0.97001 * 120.00396 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6225 -2.1922 1.1949 6 1 0.5445 -2.2605 1.0491 7 6 2.3293 -2.8750 0.0559 8 8 1.9759 -2.6253 -1.0772 9 7 3.3264 -3.7425 0.2346 10 6 3.7960 -4.2064 1.5329 11 6 3.4089 -3.2183 2.6348 12 7 1.9926 -2.8584 2.4526 13 16 0.8626 -3.1899 3.6169 14 8 1.5542 -3.1916 4.8582 15 8 -0.2497 -2.3474 3.3480 16 7 0.3439 -4.7428 3.3685 17 6 -0.8013 -5.0012 2.4921 18 6 1.0300 -5.8581 4.0252 19 1 1.8501 -5.4738 4.6318 20 6 0.0419 -6.6091 4.9199 21 6 1.5757 -6.7973 2.9806 22 1 1.4260 -6.5848 1.9323 23 6 2.2661 -7.9279 3.3630 24 7 2.7428 -8.7471 2.4514 25 14 2.5245 -8.2958 5.1761 26 1 1.3946 -9.1169 5.6805 27 1 3.7963 -9.0416 5.3535 28 1 2.5879 -7.0214 5.9357 29 1 -0.3633 -1.0220 -0.1084 30 1 -0.3633 0.4171 0.9392 31 1 -0.3633 0.6048 -0.8309 32 1 1.8934 -0.5138 -0.8901 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6137 -0.2551 2.1373 37 1 3.1271 -0.6535 1.2894 38 1 3.7698 -4.0891 -0.5555 39 1 3.3509 -5.1776 1.7493 40 1 4.8811 -4.3070 1.5070 41 1 3.5477 -3.6829 3.6109 42 1 4.0286 -2.3245 2.5615 43 1 -0.4510 -5.1486 1.4705 44 1 -1.3227 -5.8967 2.8301 45 1 -1.4821 -4.1506 2.5236 46 1 -0.7779 -6.9936 4.3130 47 1 0.5523 -7.4393 5.4082 48 1 -0.3528 -5.9299 5.6755 49 1 3.2282 -9.5427 2.7204 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407975474.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:33 Heat of formation + Delta-G solvation = -128.365008 kcal Electronic energy + Delta-G solvation = -32261.330872 eV Core-core repulsion = 28156.528624 eV Total energy + Delta-G solvation = -4104.802248 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.57171 -38.56090 -38.09386 -37.98951 -37.31537 -36.98775 -34.78512 -34.49369 -31.78914 -31.46078 -28.83900 -27.99779 -27.39319 -26.91252 -25.40248 -24.66747 -22.66755 -21.41825 -20.43623 -19.53760 -19.20073 -18.84357 -18.38877 -18.17095 -17.52824 -17.23615 -16.84886 -16.40710 -15.88062 -15.55515 -15.34951 -15.19129 -15.02495 -14.89645 -14.57293 -14.19188 -14.09731 -13.85413 -13.76158 -13.69024 -13.58894 -13.44239 -13.25247 -13.11106 -13.06567 -13.00703 -12.97013 -12.77691 -12.62042 -12.35445 -12.19892 -12.00709 -11.87428 -11.73439 -11.55662 -11.44670 -11.33639 -10.95906 -10.71670 -10.12681 -9.96820 -9.75741 -8.23877 -6.27237 -0.49952 1.35054 1.44062 1.50040 1.50660 1.72998 2.21825 2.35143 2.44191 3.10556 3.17377 3.36755 3.66647 3.77291 3.87586 3.95824 4.05312 4.11964 4.20301 4.38253 4.43414 4.44110 4.57539 4.62643 4.68423 4.72044 4.76686 4.78659 4.83560 4.87054 4.87905 4.99340 5.03258 5.06345 5.10389 5.14202 5.18310 5.23435 5.33481 5.47362 5.51464 5.56384 5.57021 5.79322 5.86529 6.30373 6.38735 6.77835 7.14577 7.37644 8.90481 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015748 B = 0.004663 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.556966 B = 6002.936288 C = 6710.920015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.104 4.104 3 C -0.139 4.139 4 C -0.111 4.111 5 C 0.146 3.854 6 H 0.114 0.886 7 C 0.520 3.480 8 O -0.578 6.578 9 N -0.699 5.699 10 C 0.088 3.912 11 C 0.105 3.895 12 N -1.004 6.004 13 S 2.793 3.207 14 O -0.995 6.995 15 O -0.992 6.992 16 N -0.989 5.989 17 C 0.096 3.904 18 C 0.239 3.761 19 H 0.051 0.949 20 C -0.163 4.163 21 C -0.507 4.507 22 H 0.054 0.946 23 C 0.036 3.964 24 N -0.932 5.932 25 Si 0.919 3.081 26 H -0.271 1.271 27 H -0.298 1.298 28 H -0.249 1.249 29 H 0.041 0.959 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.404 0.596 39 H 0.067 0.933 40 H 0.118 0.882 41 H 0.105 0.895 42 H 0.111 0.889 43 H 0.040 0.960 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.066 0.934 47 H 0.043 0.957 48 H 0.054 0.946 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.186 14.518 -0.738 14.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.197 4.197 4 C -0.151 4.151 5 C 0.036 3.964 6 H 0.132 0.868 7 C 0.305 3.695 8 O -0.458 6.458 9 N -0.348 5.348 10 C -0.038 4.038 11 C -0.020 4.020 12 N -0.844 5.844 13 S 2.804 3.196 14 O -0.979 6.979 15 O -0.976 6.976 16 N -0.830 5.830 17 C -0.049 4.049 18 C 0.134 3.866 19 H 0.069 0.931 20 C -0.222 4.222 21 C -0.546 4.546 22 H 0.072 0.928 23 C -0.164 4.164 24 N -0.572 5.572 25 Si 0.747 3.253 26 H -0.198 1.198 27 H -0.226 1.226 28 H -0.173 1.173 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.240 0.760 39 H 0.086 0.914 40 H 0.136 0.864 41 H 0.124 0.876 42 H 0.129 0.871 43 H 0.059 0.941 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.085 0.915 47 H 0.061 0.939 48 H 0.073 0.927 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.680 15.149 -0.413 15.170 hybrid contribution 0.450 -1.576 0.050 1.639 sum 1.130 13.573 -0.363 13.625 Atomic orbital electron populations 1.21861 0.95229 1.01270 1.02127 1.21223 0.96304 0.97136 0.97617 1.21779 1.01098 0.94448 1.02343 1.21928 1.02626 0.90529 0.99997 1.21206 1.00686 0.94033 0.80445 0.86848 1.20223 0.80008 0.79169 0.90115 1.90706 1.65547 1.64731 1.24854 1.45226 1.34885 1.44063 1.10639 1.21968 1.01825 0.98188 0.81779 1.21950 0.80214 0.99970 0.99828 1.58462 1.20858 1.72802 1.32231 1.01492 0.72511 0.72591 0.73035 1.93552 1.75229 1.87233 1.41906 1.93538 1.51866 1.66187 1.86004 1.57494 1.41841 1.23642 1.60001 1.21412 0.87340 1.03204 0.92990 1.18932 0.90986 0.85116 0.91579 0.93117 1.22413 1.00674 0.99682 0.99410 1.21214 1.33788 1.06131 0.93492 0.92762 1.25435 0.95076 0.95784 1.00082 1.69982 1.38359 1.13986 1.34857 0.86328 0.76714 0.79546 0.82716 1.19758 1.22612 1.17331 0.94033 0.92325 0.91726 0.90724 0.92239 0.91990 0.92084 0.89905 0.89678 0.76040 0.91420 0.86448 0.87636 0.87107 0.94112 0.90033 0.90003 0.91473 0.93881 0.92670 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.79 71.98 0.63 -2.77 16 2 C -0.10 -2.33 2.70 -10.79 -0.03 -2.36 16 3 C -0.14 -2.41 9.19 71.98 0.66 -1.75 16 4 C -0.11 -2.56 4.31 30.59 0.13 -2.43 16 5 C 0.15 4.08 2.34 44.06 0.10 4.19 16 6 H 0.11 3.43 5.65 -2.39 -0.01 3.42 16 7 C 0.52 15.66 6.97 87.79 0.61 16.27 16 8 O -0.58 -20.22 15.58 -3.05 -0.05 -20.27 16 9 N -0.70 -18.78 5.42 -467.10 -2.53 -21.31 16 10 C 0.09 2.25 7.34 86.53 0.63 2.88 16 11 C 0.11 2.60 6.39 86.23 0.55 3.15 16 12 N -1.00 -29.10 3.01 -494.71 -1.49 -30.59 16 13 S 2.79 96.16 6.13 -56.49 -0.35 95.81 16 14 O -1.00 -38.16 15.55 -128.00 -1.99 -40.15 16 15 O -0.99 -35.39 15.56 -128.00 -1.99 -37.38 16 16 N -0.99 -36.30 3.12 -520.46 -1.62 -37.93 16 17 C 0.10 3.17 9.90 127.77 1.26 4.44 16 18 C 0.24 9.95 2.21 44.25 0.10 10.05 16 19 H 0.05 2.18 5.97 -2.39 -0.01 2.17 16 20 C -0.16 -6.30 8.65 71.98 0.62 -5.68 16 21 C -0.51 -24.32 8.08 25.60 0.21 -24.11 16 22 H 0.05 2.89 7.88 -2.91 -0.02 2.87 16 23 C 0.04 1.82 5.45 84.66 0.46 2.28 16 24 N -0.93 -51.41 13.96 21.45 0.30 -51.11 16 25 Si 0.92 40.07 24.37 68.60 1.67 41.74 16 26 H -0.27 -11.53 6.87 99.48 0.68 -10.85 16 27 H -0.30 -13.14 7.11 99.48 0.71 -12.43 16 28 H -0.25 -10.29 6.53 99.48 0.65 -9.64 16 29 H 0.04 1.08 6.72 -2.39 -0.02 1.07 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.99 5.87 -2.38 -0.01 1.97 16 33 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.08 1.67 7.72 -2.39 -0.02 1.66 16 38 H 0.40 10.01 8.80 -92.70 -0.82 9.20 16 39 H 0.07 2.33 7.24 -2.39 -0.02 2.31 16 40 H 0.12 2.22 8.14 -2.38 -0.02 2.20 16 41 H 0.11 2.75 7.19 -2.39 -0.02 2.73 16 42 H 0.11 1.99 7.68 -2.39 -0.02 1.97 16 43 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.08 2.61 6.43 -2.39 -0.02 2.59 16 45 H 0.08 2.40 7.02 -2.39 -0.02 2.39 16 46 H 0.07 2.46 6.66 -2.38 -0.02 2.45 16 47 H 0.04 1.72 3.27 -2.39 -0.01 1.71 16 48 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -63.55 381.21 -2.03 -65.58 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: 0.07 Total: 31.44 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 5.95 Total: 4.17 kcal Atomic # 7 Polarization: -135.60 SS G_CDS: -5.35 Total: -140.94 kcal Atomic # 8 Polarization: -93.77 SS G_CDS: -4.03 Total: -97.80 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 1.67 Total: 41.74 kcal Atomic # 16 Polarization: 96.16 SS G_CDS: -0.35 Total: 95.81 kcal Total: -63.55 -2.03 -65.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407975474.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.784 kcal (2) G-P(sol) polarization free energy of solvation -63.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds