Wall clock time and date at job start Wed Apr 1 2020 05:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47127 * 2 1 4 4 C 1.50689 * 109.47217 * 120.00302 * 2 1 3 5 5 H 1.08007 * 120.00335 * 119.99777 * 4 2 1 6 6 C 1.37882 * 120.00524 * 300.00150 * 4 2 1 7 7 N 1.31516 * 119.99182 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00658 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47249 * 89.99396 * 8 6 4 10 10 H 1.48504 * 109.46989 * 210.00128 * 8 6 4 11 11 H 1.48503 * 109.46766 * 329.99355 * 8 6 4 12 12 N 1.46505 * 109.46912 * 240.00560 * 2 1 3 13 13 C 1.46501 * 119.99776 * 299.99853 * 12 2 1 14 14 S 1.65597 * 119.99804 * 120.00201 * 12 2 1 15 15 O 1.42094 * 106.40769 * 336.45492 * 14 12 2 16 16 O 1.42104 * 106.39756 * 203.53348 * 14 12 2 17 17 N 1.65597 * 107.21946 * 89.99922 * 14 12 2 18 18 C 1.46501 * 120.00167 * 64.99519 * 17 14 12 19 19 H 1.08995 * 110.88507 * 338.81275 * 18 17 14 20 20 C 1.54631 * 110.96744 * 102.62246 * 18 17 14 21 21 C 1.51284 * 104.19385 * 142.91726 * 20 18 17 22 22 O 1.21280 * 124.94298 * 163.71989 * 21 20 18 23 23 N 1.34621 * 110.15232 * 343.76674 * 21 20 18 24 24 C 1.46498 * 124.47196 * 179.53197 * 23 21 20 25 25 C 1.52995 * 109.47686 * 240.02825 * 24 23 21 26 26 C 1.52999 * 109.46793 * 0.03060 * 24 23 21 27 27 C 1.53003 * 109.46889 * 120.02538 * 24 23 21 28 28 C 1.46768 * 111.17925 * 359.56068 * 23 21 20 29 29 H 1.09006 * 109.47085 * 299.99893 * 1 2 3 30 30 H 1.09004 * 109.47129 * 59.99185 * 1 2 3 31 31 H 1.08996 * 109.47499 * 179.97438 * 1 2 3 32 32 H 0.97005 * 119.99601 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.46896 * 270.00513 * 13 12 2 34 34 H 1.08995 * 109.46838 * 30.00340 * 13 12 2 35 35 H 1.08999 * 109.46907 * 150.00353 * 13 12 2 36 36 H 0.97005 * 119.99957 * 244.99821 * 17 14 12 37 37 H 1.09000 * 110.48694 * 261.59439 * 20 18 17 38 38 H 1.08995 * 110.48768 * 24.10704 * 20 18 17 39 39 H 1.08996 * 109.47137 * 59.99612 * 25 24 23 40 40 H 1.08999 * 109.47291 * 179.97438 * 25 24 23 41 41 H 1.09002 * 109.46903 * 300.00006 * 25 24 23 42 42 H 1.09004 * 109.47510 * 59.99848 * 26 24 23 43 43 H 1.08999 * 109.46992 * 179.97438 * 26 24 23 44 44 H 1.09002 * 109.47211 * 299.99089 * 26 24 23 45 45 H 1.09002 * 109.47109 * 60.00356 * 27 24 23 46 46 H 1.08999 * 109.47086 * 180.02562 * 27 24 23 47 47 H 1.09004 * 109.47183 * 300.00640 * 27 24 23 48 48 H 1.09002 * 110.24468 * 258.00978 * 28 23 21 49 49 H 1.09002 * 110.24463 * 136.09736 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2303 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8300 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.6305 -0.5443 4.4118 10 1 1.3444 -0.9493 5.1122 11 1 2.4879 -2.5656 3.7120 12 7 2.0183 -0.6905 -1.1963 13 6 1.6643 -2.0931 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.6903 1.4974 -2.1193 16 8 2.8227 -0.5644 -3.5259 17 7 4.5437 -0.1041 -1.8181 18 6 5.1356 -1.4440 -1.8416 19 1 4.3617 -2.2111 -1.8201 20 6 6.0559 -1.6207 -3.0716 21 6 7.2034 -2.4625 -2.5585 22 8 7.9947 -3.0587 -3.2580 23 7 7.2185 -2.4548 -1.2124 24 6 8.1928 -3.1764 -0.3899 25 6 7.4615 -4.1773 0.5068 26 6 9.1713 -3.9247 -1.2973 27 6 8.9631 -2.1806 0.4795 28 6 6.1306 -1.6294 -0.6746 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 0.7095 1.1616 3.4845 33 1 2.4156 -2.7376 -0.9718 34 1 0.6903 -2.3000 -0.9848 35 1 1.6237 -2.2850 -2.5004 36 1 5.0733 0.6551 -1.5282 37 1 5.5286 -2.1413 -3.8710 38 1 6.4163 -0.6531 -3.4207 39 1 6.9127 -4.8866 -0.1126 40 1 8.1865 -4.7144 1.1184 41 1 6.7644 -3.6441 1.1532 42 1 9.6924 -3.2116 -1.9362 43 1 9.8965 -4.4612 -0.6855 44 1 8.6225 -4.6342 -1.9167 45 1 8.2660 -1.6474 1.1259 46 1 9.6883 -2.7174 1.0911 47 1 9.4841 -1.4675 -0.1594 48 1 6.5157 -0.6627 -0.3500 49 1 5.6454 -2.1401 0.1572 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407977770.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:20 Heat of formation + Delta-G solvation = -105.351024 kcal Electronic energy + Delta-G solvation = -31150.933573 eV Core-core repulsion = 27047.129287 eV Total energy + Delta-G solvation = -4103.804286 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.85514 -37.03175 -36.80543 -36.54665 -36.22272 -35.36264 -33.11098 -32.68892 -29.25574 -29.15896 -27.92862 -27.52368 -26.73585 -25.66214 -25.22044 -22.13842 -21.40377 -20.86268 -19.24555 -18.64972 -17.45400 -16.97655 -16.76615 -16.45360 -16.22521 -15.73129 -15.26660 -14.87652 -14.42793 -14.20330 -14.03484 -13.87199 -13.69852 -13.54193 -13.35866 -13.19317 -12.89849 -12.59552 -12.38205 -12.26315 -12.09693 -12.02919 -11.89602 -11.81123 -11.63421 -11.53943 -11.43685 -11.38990 -11.23884 -11.19585 -11.13719 -11.07853 -10.91108 -10.53361 -10.33289 -10.14794 -9.81572 -9.38255 -9.17752 -8.77890 -8.56097 -8.07012 -6.17074 -4.25879 1.10682 2.54244 2.79005 3.16610 3.24417 3.25853 3.32966 3.97080 4.26973 4.30145 4.37758 4.64224 4.70895 4.74057 4.79549 4.85592 4.98094 5.13661 5.32034 5.34247 5.38090 5.45670 5.48434 5.56660 5.59915 5.61915 5.66102 5.75576 5.81507 5.90914 6.03465 6.06645 6.11198 6.17861 6.26008 6.55275 6.55596 6.76707 6.79601 7.00701 7.05315 7.08372 7.41826 7.54998 7.70559 7.96508 8.13225 8.17963 8.76860 9.40732 10.87932 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010202 B = 0.004597 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.894448 B = 6089.756111 C = 8093.614105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.525 4.525 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.989 5.989 13 C 0.096 3.904 14 S 2.781 3.219 15 O -0.977 6.977 16 O -0.994 6.994 17 N -1.116 6.116 18 C 0.154 3.846 19 H 0.108 0.892 20 C -0.173 4.173 21 C 0.523 3.477 22 O -0.531 6.531 23 N -0.610 5.610 24 C 0.173 3.827 25 C -0.160 4.160 26 C -0.139 4.139 27 C -0.158 4.158 28 C 0.096 3.904 29 H 0.093 0.907 30 H 0.013 0.987 31 H 0.033 0.967 32 H 0.264 0.736 33 H 0.042 0.958 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.415 0.585 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.056 0.944 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.059 0.941 48 H 0.081 0.919 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.267 -6.722 -3.998 13.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.564 4.564 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.832 5.832 13 C -0.050 4.050 14 S 2.789 3.211 15 O -0.961 6.961 16 O -0.977 6.977 17 N -0.873 5.873 18 C 0.045 3.955 19 H 0.126 0.874 20 C -0.215 4.215 21 C 0.311 3.689 22 O -0.408 6.408 23 N -0.345 5.345 24 C 0.090 3.910 25 C -0.218 4.218 26 C -0.197 4.197 27 C -0.216 4.216 28 C -0.029 4.029 29 H 0.112 0.888 30 H 0.032 0.968 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.249 0.751 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.086 0.914 47 H 0.078 0.922 48 H 0.099 0.901 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.232 -6.606 -5.004 13.959 hybrid contribution 0.552 -0.259 1.657 1.765 sum 11.784 -6.865 -3.348 14.043 Atomic orbital electron populations 1.22073 0.98008 0.99652 1.00887 1.18742 0.91879 0.92728 0.80136 0.92294 1.21337 1.31969 1.13034 0.90067 0.91988 1.24922 0.94959 0.94962 0.98963 1.69877 1.36084 1.22559 1.23851 0.86565 0.78628 0.79892 0.82662 1.20698 1.21191 1.19951 1.57683 1.64250 1.21443 1.39809 1.21323 1.02050 0.81697 0.99978 1.01909 0.72500 0.73257 0.73403 1.93611 1.83343 1.32324 1.86824 1.93553 1.85832 1.76288 1.42022 1.56182 1.32726 1.13572 1.84781 1.21361 0.95664 0.85136 0.93357 0.87386 1.22959 0.96113 1.02405 1.00027 1.20872 0.85471 0.80525 0.82071 1.90708 1.43232 1.45694 1.61170 1.48520 1.30603 1.48982 1.06401 1.20473 0.88105 0.91477 0.90966 1.22209 1.01002 0.98975 0.99648 1.22091 0.98184 1.00778 0.98626 1.22197 1.00375 0.99330 0.99719 1.22396 0.87125 0.96182 0.97195 0.88836 0.96802 0.94785 0.92600 0.93948 0.90408 0.91894 0.75106 0.87147 0.87122 0.92002 0.91331 0.91748 0.91346 0.92542 0.91272 0.91878 0.91353 0.92221 0.90093 0.88937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 8.95 37.16 0.33 -2.97 16 2 C 0.27 6.07 2.62 -69.09 -0.18 5.88 16 3 H 0.06 1.49 6.91 -51.93 -0.36 1.13 16 4 C -0.52 -12.41 8.37 -34.44 -0.29 -12.70 16 5 H 0.06 1.40 7.65 -52.48 -0.40 1.00 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -23.20 11.32 55.43 0.63 -22.58 16 8 Si 0.89 19.23 29.54 -169.99 -5.02 14.21 16 9 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 12 N -0.99 -18.50 3.12 -115.86 -0.36 -18.86 16 13 C 0.10 1.53 9.36 59.85 0.56 2.09 16 14 S 2.78 48.91 6.06 -107.50 -0.65 48.26 16 15 O -0.98 -20.61 16.70 -57.17 -0.95 -21.56 16 16 O -0.99 -18.36 16.50 -57.17 -0.94 -19.30 16 17 N -1.12 -14.97 5.62 -3.50 -0.02 -14.99 16 18 C 0.15 1.84 3.73 -66.30 -0.25 1.59 16 19 H 0.11 1.28 6.79 -51.93 -0.35 0.92 16 20 C -0.17 -2.02 6.59 -26.74 -0.18 -2.20 16 21 C 0.52 6.80 7.85 -10.77 -0.08 6.72 16 22 O -0.53 -8.32 14.02 5.56 0.08 -8.24 16 23 N -0.61 -6.89 2.77 -157.51 -0.44 -7.33 16 24 C 0.17 1.76 1.20 -131.82 -0.16 1.60 16 25 C -0.16 -1.48 8.49 37.16 0.32 -1.17 16 26 C -0.14 -1.50 7.00 37.16 0.26 -1.24 16 27 C -0.16 -1.41 8.54 37.16 0.32 -1.09 16 28 C 0.10 1.04 6.32 -3.12 -0.02 1.02 16 29 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 30 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.03 0.71 6.66 -51.93 -0.35 0.36 16 32 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 33 H 0.04 0.60 7.50 -51.93 -0.39 0.21 16 34 H 0.08 1.26 6.43 -51.93 -0.33 0.93 16 35 H 0.06 0.92 7.02 -51.93 -0.36 0.55 16 36 H 0.42 4.81 8.70 -34.47 -0.30 4.51 16 37 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.11 1.19 8.08 -51.93 -0.42 0.77 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.61 7.21 -51.93 -0.37 0.24 16 42 H 0.07 0.84 7.07 -51.93 -0.37 0.47 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.85 7.09 -51.93 -0.37 0.48 16 45 H 0.06 0.56 7.90 -51.93 -0.41 0.15 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.08 0.81 7.89 -51.93 -0.41 0.40 16 49 H 0.09 1.01 7.12 -51.93 -0.37 0.64 16 LS Contribution 392.69 15.07 5.92 5.92 Total: -1.00 -30.67 392.69 -9.20 -39.87 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -7.97 Total: 5.55 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 0.54 Total: -0.94 kcal Atomic # 7 Polarization: -63.56 SS G_CDS: -0.19 Total: -63.75 kcal Atomic # 8 Polarization: -47.29 SS G_CDS: -1.82 Total: -49.11 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal Atomic # 16 Polarization: 48.91 SS G_CDS: -0.65 Total: 48.26 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.67 -9.20 -39.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407977770.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.483 kcal (2) G-P(sol) polarization free energy of solvation -30.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds