Wall clock time and date at job start Wed Apr 1 2020 05:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47127 * 2 1 4 4 C 1.50689 * 109.47217 * 120.00302 * 2 1 3 5 5 H 1.08007 * 120.00335 * 119.99777 * 4 2 1 6 6 C 1.37882 * 120.00524 * 300.00150 * 4 2 1 7 7 N 1.31516 * 119.99182 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00658 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47249 * 89.99396 * 8 6 4 10 10 H 1.48504 * 109.46989 * 210.00128 * 8 6 4 11 11 H 1.48503 * 109.46766 * 329.99355 * 8 6 4 12 12 N 1.46505 * 109.46912 * 240.00560 * 2 1 3 13 13 C 1.46501 * 119.99776 * 299.99853 * 12 2 1 14 14 S 1.65597 * 119.99804 * 120.00201 * 12 2 1 15 15 O 1.42094 * 106.40769 * 336.45492 * 14 12 2 16 16 O 1.42104 * 106.39756 * 203.53348 * 14 12 2 17 17 N 1.65597 * 107.21946 * 89.99922 * 14 12 2 18 18 C 1.46501 * 120.00167 * 64.99519 * 17 14 12 19 19 H 1.08995 * 110.88507 * 338.81275 * 18 17 14 20 20 C 1.54631 * 110.96744 * 102.62246 * 18 17 14 21 21 C 1.51284 * 104.19385 * 142.91726 * 20 18 17 22 22 O 1.21280 * 124.94298 * 163.71989 * 21 20 18 23 23 N 1.34621 * 110.15232 * 343.76674 * 21 20 18 24 24 C 1.46498 * 124.47196 * 179.53197 * 23 21 20 25 25 C 1.52995 * 109.47686 * 240.02825 * 24 23 21 26 26 C 1.52999 * 109.46793 * 0.03060 * 24 23 21 27 27 C 1.53003 * 109.46889 * 120.02538 * 24 23 21 28 28 C 1.46768 * 111.17925 * 359.56068 * 23 21 20 29 29 H 1.09006 * 109.47085 * 299.99893 * 1 2 3 30 30 H 1.09004 * 109.47129 * 59.99185 * 1 2 3 31 31 H 1.08996 * 109.47499 * 179.97438 * 1 2 3 32 32 H 0.97005 * 119.99601 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.46896 * 270.00513 * 13 12 2 34 34 H 1.08995 * 109.46838 * 30.00340 * 13 12 2 35 35 H 1.08999 * 109.46907 * 150.00353 * 13 12 2 36 36 H 0.97005 * 119.99957 * 244.99821 * 17 14 12 37 37 H 1.09000 * 110.48694 * 261.59439 * 20 18 17 38 38 H 1.08995 * 110.48768 * 24.10704 * 20 18 17 39 39 H 1.08996 * 109.47137 * 59.99612 * 25 24 23 40 40 H 1.08999 * 109.47291 * 179.97438 * 25 24 23 41 41 H 1.09002 * 109.46903 * 300.00006 * 25 24 23 42 42 H 1.09004 * 109.47510 * 59.99848 * 26 24 23 43 43 H 1.08999 * 109.46992 * 179.97438 * 26 24 23 44 44 H 1.09002 * 109.47211 * 299.99089 * 26 24 23 45 45 H 1.09002 * 109.47109 * 60.00356 * 27 24 23 46 46 H 1.08999 * 109.47086 * 180.02562 * 27 24 23 47 47 H 1.09004 * 109.47183 * 300.00640 * 27 24 23 48 48 H 1.09002 * 110.24468 * 258.00978 * 28 23 21 49 49 H 1.09002 * 110.24463 * 136.09736 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2303 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8300 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.6305 -0.5443 4.4118 10 1 1.3444 -0.9493 5.1122 11 1 2.4879 -2.5656 3.7120 12 7 2.0183 -0.6905 -1.1963 13 6 1.6643 -2.0931 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.6903 1.4974 -2.1193 16 8 2.8227 -0.5644 -3.5259 17 7 4.5437 -0.1041 -1.8181 18 6 5.1356 -1.4440 -1.8416 19 1 4.3617 -2.2111 -1.8201 20 6 6.0559 -1.6207 -3.0716 21 6 7.2034 -2.4625 -2.5585 22 8 7.9947 -3.0587 -3.2580 23 7 7.2185 -2.4548 -1.2124 24 6 8.1928 -3.1764 -0.3899 25 6 7.4615 -4.1773 0.5068 26 6 9.1713 -3.9247 -1.2973 27 6 8.9631 -2.1806 0.4795 28 6 6.1306 -1.6294 -0.6746 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 0.7095 1.1616 3.4845 33 1 2.4156 -2.7376 -0.9718 34 1 0.6903 -2.3000 -0.9848 35 1 1.6237 -2.2850 -2.5004 36 1 5.0733 0.6551 -1.5282 37 1 5.5286 -2.1413 -3.8710 38 1 6.4163 -0.6531 -3.4207 39 1 6.9127 -4.8866 -0.1126 40 1 8.1865 -4.7144 1.1184 41 1 6.7644 -3.6441 1.1532 42 1 9.6924 -3.2116 -1.9362 43 1 9.8965 -4.4612 -0.6855 44 1 8.6225 -4.6342 -1.9167 45 1 8.2660 -1.6474 1.1259 46 1 9.6883 -2.7174 1.0911 47 1 9.4841 -1.4675 -0.1594 48 1 6.5157 -0.6627 -0.3500 49 1 5.6454 -2.1401 0.1572 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407977770.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:19 Heat of formation + Delta-G solvation = -126.664940 kcal Electronic energy + Delta-G solvation = -31151.857814 eV Core-core repulsion = 27047.129287 eV Total energy + Delta-G solvation = -4104.728527 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.80700 -38.37092 -37.99162 -37.81959 -37.48855 -36.87815 -34.45581 -34.14684 -30.87008 -30.21765 -28.79897 -28.22257 -27.64498 -27.24789 -26.91534 -23.09539 -22.56493 -22.30504 -20.56025 -19.62034 -18.84504 -18.41408 -18.23973 -17.71258 -17.30240 -16.95089 -16.68463 -16.16108 -15.69440 -15.16146 -15.10600 -14.92969 -14.79206 -14.73478 -14.61204 -14.53821 -14.10563 -13.63784 -13.62002 -13.41116 -13.21576 -13.17472 -13.12327 -13.04505 -12.90056 -12.86080 -12.74399 -12.70104 -12.62417 -12.58326 -12.31973 -12.19962 -12.08131 -12.04208 -11.93239 -11.82230 -11.12626 -10.86784 -10.43621 -10.28230 -9.68951 -9.62041 -8.03026 -6.17146 -0.30071 1.49204 1.52570 1.54030 1.60026 1.83135 2.06628 2.50305 2.61694 3.26482 3.32090 3.41822 3.44449 3.79861 3.86049 3.92184 3.95590 4.09734 4.13975 4.33216 4.54180 4.57028 4.70457 4.71677 4.77351 4.78928 4.84196 4.84823 4.89297 4.94058 4.97207 5.00073 5.02167 5.13756 5.20183 5.22910 5.23440 5.31150 5.37488 5.66276 5.68951 5.74696 5.90340 6.05931 6.12694 6.18306 6.35410 6.92626 7.15244 7.52772 9.01499 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010202 B = 0.004597 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.894448 B = 6089.756111 C = 8093.614105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.273 3.727 3 H 0.027 0.973 4 C -0.521 4.521 5 H 0.075 0.925 6 C 0.017 3.983 7 N -0.920 5.920 8 Si 0.954 3.046 9 H -0.277 1.277 10 H -0.296 1.296 11 H -0.262 1.262 12 N -0.995 5.995 13 C 0.089 3.911 14 S 2.799 3.201 15 O -1.015 7.015 16 O -1.001 7.001 17 N -1.103 6.103 18 C 0.151 3.849 19 H 0.113 0.887 20 C -0.169 4.169 21 C 0.519 3.481 22 O -0.563 6.563 23 N -0.604 5.604 24 C 0.165 3.835 25 C -0.156 4.156 26 C -0.132 4.132 27 C -0.153 4.153 28 C 0.098 3.902 29 H 0.068 0.932 30 H 0.017 0.983 31 H 0.045 0.955 32 H 0.261 0.739 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.425 0.575 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.053 0.947 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.049 0.951 43 H 0.078 0.922 44 H 0.048 0.952 45 H 0.064 0.936 46 H 0.085 0.915 47 H 0.052 0.948 48 H 0.093 0.907 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.514 -8.227 -3.156 15.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.169 3.831 3 H 0.045 0.955 4 C -0.560 4.560 5 H 0.093 0.907 6 C -0.183 4.183 7 N -0.560 5.560 8 Si 0.780 3.220 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.186 1.186 12 N -0.836 5.836 13 C -0.056 4.056 14 S 2.807 3.193 15 O -0.999 6.999 16 O -0.985 6.985 17 N -0.864 5.864 18 C 0.042 3.958 19 H 0.131 0.869 20 C -0.211 4.211 21 C 0.307 3.693 22 O -0.443 6.443 23 N -0.338 5.338 24 C 0.083 3.917 25 C -0.214 4.214 26 C -0.190 4.190 27 C -0.211 4.211 28 C -0.026 4.026 29 H 0.087 0.913 30 H 0.036 0.964 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.261 0.739 37 H 0.128 0.872 38 H 0.138 0.862 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.097 0.903 44 H 0.068 0.932 45 H 0.083 0.917 46 H 0.104 0.896 47 H 0.071 0.929 48 H 0.111 0.889 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 12.482 -8.127 -4.158 15.464 hybrid contribution 0.202 0.189 1.333 1.361 sum 12.684 -7.938 -2.826 15.228 Atomic orbital electron populations 1.21979 0.98286 1.00073 0.99891 1.18398 0.91701 0.91528 0.81459 0.95496 1.21618 1.31234 1.12941 0.90215 0.90692 1.25656 0.95305 0.95569 1.01766 1.70026 1.37649 1.24169 1.24106 0.85624 0.77787 0.79436 0.79136 1.20268 1.22209 1.18631 1.57548 1.65076 1.22490 1.38537 1.21532 1.02546 0.80358 1.01186 1.01193 0.72998 0.72045 0.73029 1.93560 1.84359 1.34763 1.87240 1.93542 1.86354 1.76205 1.42352 1.55773 1.31221 1.14849 1.84544 1.21501 0.96077 0.84119 0.94109 0.86866 1.22937 0.95610 1.02701 0.99875 1.21037 0.85374 0.80305 0.82549 1.90698 1.44473 1.47109 1.61976 1.48601 1.30647 1.48583 1.06013 1.20682 0.88031 0.92033 0.90987 1.22182 1.01284 0.98570 0.99395 1.21993 0.98400 1.00053 0.98515 1.22162 1.00533 0.98979 0.99467 1.22421 0.86736 0.96816 0.96671 0.91302 0.96353 0.93578 0.92986 0.91863 0.90810 0.90449 0.73857 0.87164 0.86169 0.92814 0.89570 0.91669 0.93227 0.90348 0.93241 0.91654 0.89630 0.92903 0.88903 0.88293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.43 8.95 71.98 0.64 -5.79 16 2 C 0.27 12.28 2.62 44.24 0.12 12.39 16 3 H 0.03 1.40 6.91 -2.39 -0.02 1.38 16 4 C -0.52 -23.93 8.37 25.60 0.21 -23.71 16 5 H 0.07 3.19 7.65 -2.91 -0.02 3.16 16 6 C 0.02 0.80 5.30 84.66 0.45 1.25 16 7 N -0.92 -48.60 11.32 21.45 0.24 -48.36 16 8 Si 0.95 38.38 29.54 68.60 2.03 40.41 16 9 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 10 H -0.30 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 12 N -0.99 -35.94 3.12 -520.46 -1.62 -37.57 16 13 C 0.09 2.64 9.36 127.77 1.20 3.84 16 14 S 2.80 95.62 6.06 -56.49 -0.34 95.28 16 15 O -1.01 -42.92 16.70 -128.00 -2.14 -45.06 16 16 O -1.00 -35.51 16.50 -128.00 -2.11 -37.62 16 17 N -1.10 -27.72 5.62 -164.99 -0.93 -28.65 16 18 C 0.15 3.27 3.73 46.05 0.17 3.44 16 19 H 0.11 2.38 6.79 -2.39 -0.02 2.36 16 20 C -0.17 -3.70 6.59 30.59 0.20 -3.49 16 21 C 0.52 12.93 7.85 87.87 0.69 13.62 16 22 O -0.56 -17.51 14.02 -3.03 -0.04 -17.55 16 23 N -0.60 -12.53 2.77 -770.73 -2.13 -14.67 16 24 C 0.17 3.02 1.20 3.60 0.00 3.02 16 25 C -0.16 -2.47 8.49 71.98 0.61 -1.86 16 26 C -0.13 -2.67 7.00 71.98 0.50 -2.17 16 27 C -0.15 -2.33 8.54 71.98 0.61 -1.71 16 28 C 0.10 1.88 6.32 86.83 0.55 2.43 16 29 H 0.07 3.46 6.07 -2.38 -0.01 3.45 16 30 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 1.90 6.66 -2.39 -0.02 1.89 16 32 H 0.26 13.30 8.31 -92.70 -0.77 12.53 16 33 H 0.06 1.60 7.50 -2.39 -0.02 1.59 16 34 H 0.07 2.25 6.43 -2.39 -0.02 2.23 16 35 H 0.08 2.07 7.02 -2.39 -0.02 2.06 16 36 H 0.43 9.16 8.70 -96.74 -0.84 8.31 16 37 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.12 2.39 8.08 -2.39 -0.02 2.37 16 39 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.06 1.03 7.21 -2.39 -0.02 1.01 16 42 H 0.05 1.19 7.07 -2.38 -0.02 1.17 16 43 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.05 1.19 7.09 -2.39 -0.02 1.17 16 45 H 0.06 0.97 7.90 -2.39 -0.02 0.96 16 46 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 48 H 0.09 1.60 7.89 -2.39 -0.02 1.58 16 49 H 0.10 1.84 7.12 -2.39 -0.02 1.82 16 Total: -1.00 -65.36 392.69 -0.97 -66.33 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.11 Total: 26.19 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 5.97 Total: 1.26 kcal Atomic # 7 Polarization: -124.80 SS G_CDS: -4.44 Total: -129.24 kcal Atomic # 8 Polarization: -95.93 SS G_CDS: -4.29 Total: -100.22 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Atomic # 16 Polarization: 95.62 SS G_CDS: -0.34 Total: 95.28 kcal Total: -65.36 -0.97 -66.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407977770.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.336 kcal (2) G-P(sol) polarization free energy of solvation -65.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds