Wall clock time and date at job start Wed Apr 1 2020 04:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47167 * 2 1 4 4 C 1.52998 * 109.47229 * 120.00432 * 2 1 3 5 5 C 1.52994 * 109.47280 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46997 * 299.99662 * 5 4 2 7 7 C 1.53011 * 109.47112 * 60.00064 * 6 5 4 8 8 C 1.52994 * 109.46667 * 300.00108 * 7 6 5 9 9 H 1.09001 * 109.46851 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.47004 * 299.99500 * 8 7 6 11 11 C 1.34775 * 120.00255 * 275.00092 * 10 8 7 12 12 O 1.21286 * 119.99920 * 0.02562 * 11 10 8 13 13 C 1.50704 * 119.99977 * 180.02562 * 11 10 8 14 14 N 1.46496 * 109.46961 * 180.02562 * 13 11 10 15 15 C 1.36940 * 120.00225 * 84.99972 * 14 13 11 16 16 H 1.08002 * 119.99862 * 212.69067 * 15 14 13 17 17 C 1.38808 * 119.99950 * 32.68315 * 15 14 13 18 18 N 1.31626 * 119.99858 * 24.26077 * 17 15 14 19 19 Si 1.86797 * 120.00292 * 204.25639 * 17 15 14 20 20 H 1.48501 * 109.46959 * 60.00568 * 19 17 15 21 21 H 1.48504 * 109.46990 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47183 * 300.00386 * 19 17 15 23 23 S 1.65599 * 119.99929 * 265.00023 * 14 13 11 24 24 O 1.42104 * 106.40098 * 208.42901 * 23 14 13 25 25 O 1.42095 * 106.40136 * 341.34773 * 23 14 13 26 26 N 1.65599 * 107.21973 * 94.88775 * 23 14 13 27 27 C 1.46501 * 119.99931 * 84.34079 * 26 23 14 28 28 C 1.46494 * 120.00088 * 264.34170 * 26 23 14 29 29 H 1.08998 * 109.47167 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47182 * 299.99864 * 1 2 3 31 31 H 1.08999 * 109.47400 * 59.99583 * 1 2 3 32 32 H 1.08998 * 109.47399 * 59.99710 * 4 2 1 33 33 H 1.08997 * 109.46797 * 299.99940 * 4 2 1 34 34 H 1.08999 * 109.47451 * 179.97438 * 5 4 2 35 35 H 1.09004 * 109.47515 * 59.99584 * 5 4 2 36 36 H 1.08992 * 109.47346 * 300.00274 * 6 5 4 37 37 H 1.09003 * 109.47358 * 179.97438 * 6 5 4 38 38 H 1.08997 * 109.47079 * 179.97438 * 7 6 5 39 39 H 1.09003 * 109.46389 * 59.99929 * 7 6 5 40 40 H 0.97000 * 119.99728 * 95.01025 * 10 8 7 41 41 H 1.09001 * 109.47071 * 300.00081 * 13 11 10 42 42 H 1.09000 * 109.46976 * 60.00296 * 13 11 10 43 43 H 0.96999 * 120.00053 * 179.97438 * 18 17 15 44 44 H 1.09004 * 109.47481 * 4.30524 * 27 26 23 45 45 H 1.09003 * 109.47221 * 124.30129 * 27 26 23 46 46 H 1.09002 * 109.47330 * 244.30285 * 27 26 23 47 47 H 1.08997 * 109.47262 * 89.99868 * 28 26 23 48 48 H 1.09000 * 109.47342 * 209.99915 * 28 26 23 49 49 H 1.09000 * 109.47195 * 329.99702 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5700 -0.7219 1.2489 6 6 4.0794 -1.4435 -0.0004 7 6 3.5694 -0.7222 -1.2497 8 6 2.0395 -0.7216 -1.2493 9 1 1.6761 -0.2081 -2.1395 10 7 1.5507 -2.1027 -1.2491 11 6 1.4214 -2.7720 -2.4117 12 8 1.7102 -2.2311 -3.4582 13 6 0.9180 -4.1925 -2.4115 14 7 0.8688 -4.6933 -3.7873 15 6 1.9905 -5.2297 -4.3612 16 1 2.1610 -5.1169 -5.4217 17 6 2.9084 -5.9180 -3.5800 18 7 2.5258 -6.4712 -2.4485 19 14 4.6866 -6.0595 -4.1343 20 1 5.2738 -4.7018 -4.2651 21 1 5.4572 -6.8381 -3.1316 22 1 4.7424 -6.7516 -5.4470 23 16 -0.5432 -4.6109 -4.6485 24 8 -0.5099 -5.6856 -5.5775 25 8 -1.5841 -4.4382 -3.6967 26 7 -0.4915 -3.2180 -5.5426 27 6 0.1870 -3.2059 -6.8410 28 6 -1.1241 -1.9980 -5.0353 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6767 -1.7490 1.2492 33 1 1.6767 -0.2075 2.1391 34 1 3.9334 -1.2354 2.1390 35 1 3.9338 0.3056 1.2486 36 1 3.7157 -2.4709 -0.0003 37 1 5.1695 -1.4435 -0.0009 38 1 3.9327 -1.2360 -2.1397 39 1 3.9332 0.3054 -1.2498 40 1 1.3199 -2.5353 -0.4121 41 1 1.5901 -4.8160 -1.8220 42 1 -0.0812 -4.2237 -1.9771 43 1 3.1671 -6.9525 -1.9027 44 1 0.5263 -4.2131 -7.0832 45 1 -0.5051 -2.8611 -7.6094 46 1 1.0445 -2.5344 -6.7967 47 1 -0.4017 -1.4315 -4.4476 48 1 -1.4666 -1.3908 -5.8733 49 1 -1.9746 -2.2637 -4.4076 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408007393.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:03 Heat of formation + Delta-G solvation = -113.165173 kcal Electronic energy + Delta-G solvation = -31928.405440 eV Core-core repulsion = 27824.262306 eV Total energy + Delta-G solvation = -4104.143133 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -39.94352 -37.83502 -36.21792 -35.34905 -35.11089 -34.72337 -33.23469 -32.43475 -31.31564 -29.95111 -27.54048 -27.13085 -25.98760 -24.09511 -23.74663 -22.47479 -21.37642 -20.46040 -18.76097 -18.48048 -17.65511 -16.84222 -16.55715 -16.22638 -15.31480 -15.24442 -15.12155 -14.78398 -14.51689 -14.07464 -13.96873 -13.92365 -13.59075 -13.33969 -13.21296 -12.95766 -12.70595 -12.27631 -12.15100 -12.02454 -11.89614 -11.77680 -11.74616 -11.57727 -11.52978 -11.35418 -11.16921 -10.91608 -10.86497 -10.81390 -10.74200 -10.69115 -10.51822 -10.47827 -10.25571 -10.20012 -9.93818 -9.36650 -8.91163 -8.48864 -8.33464 -7.70036 -6.24066 -3.90031 1.69620 3.25751 3.30008 3.36279 3.52058 3.67851 4.06385 4.31939 4.61872 4.63183 4.71695 4.76772 5.04453 5.10202 5.22039 5.39100 5.40244 5.42972 5.48774 5.49340 5.60040 5.62642 5.74771 5.79103 5.88164 5.88588 5.93954 5.94681 6.03434 6.07786 6.08102 6.19173 6.22411 6.26814 6.28364 6.32552 6.34144 6.45059 6.46451 6.52998 6.80259 7.07517 7.16280 7.32692 7.68437 8.13701 8.42304 9.02302 9.05780 9.40832 10.79917 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010373 B = 0.005353 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.729147 B = 5229.527797 C = 6830.286838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.077 0.923 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.130 4.130 8 C 0.154 3.846 9 H 0.082 0.918 10 N -0.734 5.734 11 C 0.494 3.506 12 O -0.526 6.526 13 C 0.092 3.908 14 N -0.831 5.831 15 C -0.283 4.283 16 H 0.087 0.913 17 C 0.038 3.962 18 N -0.871 5.871 19 Si 0.909 3.091 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.273 1.273 23 S 2.762 3.238 24 O -0.985 6.985 25 O -1.014 7.014 26 N -1.007 6.007 27 C 0.101 3.899 28 C 0.096 3.904 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.394 0.606 41 H 0.144 0.856 42 H 0.087 0.913 43 H 0.266 0.734 44 H 0.080 0.920 45 H 0.048 0.952 46 H 0.054 0.946 47 H 0.054 0.946 48 H 0.058 0.942 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.492 13.162 6.390 14.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 H 0.096 0.904 4 C -0.153 4.153 5 C -0.155 4.155 6 C -0.157 4.157 7 C -0.168 4.168 8 C 0.049 3.951 9 H 0.100 0.900 10 N -0.389 5.389 11 C 0.280 3.720 12 O -0.400 6.400 13 C -0.040 4.040 14 N -0.663 5.663 15 C -0.415 4.415 16 H 0.105 0.895 17 C -0.166 4.166 18 N -0.511 5.511 19 Si 0.736 3.264 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.198 1.198 23 S 2.776 3.224 24 O -0.968 6.968 25 O -0.998 6.998 26 N -0.846 5.846 27 C -0.045 4.045 28 C -0.051 4.051 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.228 0.772 41 H 0.161 0.839 42 H 0.105 0.895 43 H 0.076 0.924 44 H 0.098 0.902 45 H 0.067 0.933 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.015 12.813 5.667 14.047 hybrid contribution 1.342 0.165 0.252 1.375 sum 0.327 12.978 5.919 14.268 Atomic orbital electron populations 1.21817 0.94771 1.02452 1.01397 1.21401 0.95996 0.99570 0.94664 0.90423 1.21597 0.95689 1.00786 0.97225 1.21531 0.95492 1.00473 0.98008 1.21495 0.99875 1.00164 0.94138 1.21904 0.95858 1.00371 0.98709 1.20776 0.93149 0.83410 0.97791 0.89967 1.46251 1.69205 1.13889 1.09579 1.22208 0.77124 0.89504 0.83174 1.90600 1.48934 1.69170 1.31331 1.21321 1.03398 0.90490 0.88781 1.52591 1.24324 1.69049 1.20288 1.18838 0.97647 1.30386 0.94645 0.89516 1.25128 1.00090 0.94528 0.96900 1.69888 1.34469 1.31852 1.14907 0.86271 0.83272 0.78220 0.78594 1.20149 1.21156 1.19806 1.02757 0.73453 0.72903 0.73335 1.93495 1.87158 1.51568 1.64606 1.93433 1.57154 1.86995 1.62206 1.57673 1.68967 1.27193 1.30740 1.21328 0.96424 1.03232 0.83550 1.21345 0.97387 0.87197 0.99154 0.92111 0.92904 0.92635 0.91791 0.91992 0.92244 0.92317 0.91418 0.92484 0.91137 0.91970 0.77150 0.83906 0.89541 0.92386 0.90164 0.93332 0.92730 0.92702 0.92272 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.03 37.16 0.34 -1.12 16 2 C -0.10 -0.98 2.52 -90.62 -0.23 -1.21 16 3 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 4 C -0.12 -1.08 5.03 -26.73 -0.13 -1.21 16 5 C -0.12 -1.14 5.92 -26.73 -0.16 -1.29 16 6 C -0.12 -1.44 5.77 -26.73 -0.15 -1.59 16 7 C -0.13 -1.72 5.60 -26.73 -0.15 -1.87 16 8 C 0.15 2.03 2.23 -67.93 -0.15 1.88 16 9 H 0.08 1.22 7.58 -51.93 -0.39 0.83 16 10 N -0.73 -11.05 3.54 -53.80 -0.19 -11.24 16 11 C 0.49 9.71 7.83 -10.98 -0.09 9.62 16 12 O -0.53 -11.53 14.94 5.55 0.08 -11.45 16 13 C 0.09 2.01 5.75 -5.19 -0.03 1.98 16 14 N -0.83 -20.44 2.43 -61.09 -0.15 -20.59 16 15 C -0.28 -7.47 8.83 -15.06 -0.13 -7.60 16 16 H 0.09 2.28 7.94 -52.49 -0.42 1.87 16 17 C 0.04 0.99 4.97 -17.43 -0.09 0.91 16 18 N -0.87 -22.81 11.25 55.49 0.62 -22.19 16 19 Si 0.91 20.67 29.62 -169.99 -5.03 15.63 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 S 2.76 65.40 6.04 -107.50 -0.65 64.75 16 24 O -0.98 -26.02 16.14 -57.17 -0.92 -26.94 16 25 O -1.01 -24.46 15.13 -57.17 -0.86 -25.32 16 26 N -1.01 -19.92 3.64 -129.21 -0.47 -20.39 16 27 C 0.10 1.77 10.68 59.85 0.64 2.41 16 28 C 0.10 1.61 10.67 59.84 0.64 2.24 16 29 H 0.06 0.65 7.44 -51.93 -0.39 0.27 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.62 6.50 -51.93 -0.34 0.29 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.93 7.60 -51.93 -0.39 0.53 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.39 5.21 6.65 -40.82 -0.27 4.94 16 41 H 0.14 3.33 5.27 -51.93 -0.27 3.06 16 42 H 0.09 1.80 6.88 -51.93 -0.36 1.44 16 43 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 44 H 0.08 1.50 7.00 -51.93 -0.36 1.14 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.05 0.95 7.06 -51.93 -0.37 0.58 16 48 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 49 H 0.07 1.18 7.00 -51.93 -0.36 0.81 16 LS Contribution 391.77 15.07 5.90 5.90 Total: -1.00 -31.61 391.77 -9.50 -41.11 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -8.13 Total: 7.57 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 0.30 Total: 3.15 kcal Atomic # 7 Polarization: -74.23 SS G_CDS: -0.18 Total: -74.41 kcal Atomic # 8 Polarization: -62.00 SS G_CDS: -1.70 Total: -63.71 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.63 kcal Atomic # 16 Polarization: 65.40 SS G_CDS: -0.65 Total: 64.75 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.61 -9.50 -41.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408007393.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.053 kcal (2) G-P(sol) polarization free energy of solvation -31.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds