Wall clock time and date at job start Wed Apr 1 2020 04:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47167 * 2 1 4 4 C 1.52998 * 109.47229 * 120.00432 * 2 1 3 5 5 C 1.52994 * 109.47280 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46997 * 299.99662 * 5 4 2 7 7 C 1.53011 * 109.47112 * 60.00064 * 6 5 4 8 8 C 1.52994 * 109.46667 * 300.00108 * 7 6 5 9 9 H 1.09001 * 109.46851 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.47004 * 299.99500 * 8 7 6 11 11 C 1.34775 * 120.00255 * 275.00092 * 10 8 7 12 12 O 1.21286 * 119.99920 * 0.02562 * 11 10 8 13 13 C 1.50704 * 119.99977 * 180.02562 * 11 10 8 14 14 N 1.46496 * 109.46961 * 180.02562 * 13 11 10 15 15 C 1.36940 * 120.00225 * 84.99972 * 14 13 11 16 16 H 1.08002 * 119.99862 * 212.69067 * 15 14 13 17 17 C 1.38808 * 119.99950 * 32.68315 * 15 14 13 18 18 N 1.31626 * 119.99858 * 24.26077 * 17 15 14 19 19 Si 1.86797 * 120.00292 * 204.25639 * 17 15 14 20 20 H 1.48501 * 109.46959 * 60.00568 * 19 17 15 21 21 H 1.48504 * 109.46990 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47183 * 300.00386 * 19 17 15 23 23 S 1.65599 * 119.99929 * 265.00023 * 14 13 11 24 24 O 1.42104 * 106.40098 * 208.42901 * 23 14 13 25 25 O 1.42095 * 106.40136 * 341.34773 * 23 14 13 26 26 N 1.65599 * 107.21973 * 94.88775 * 23 14 13 27 27 C 1.46501 * 119.99931 * 84.34079 * 26 23 14 28 28 C 1.46494 * 120.00088 * 264.34170 * 26 23 14 29 29 H 1.08998 * 109.47167 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47182 * 299.99864 * 1 2 3 31 31 H 1.08999 * 109.47400 * 59.99583 * 1 2 3 32 32 H 1.08998 * 109.47399 * 59.99710 * 4 2 1 33 33 H 1.08997 * 109.46797 * 299.99940 * 4 2 1 34 34 H 1.08999 * 109.47451 * 179.97438 * 5 4 2 35 35 H 1.09004 * 109.47515 * 59.99584 * 5 4 2 36 36 H 1.08992 * 109.47346 * 300.00274 * 6 5 4 37 37 H 1.09003 * 109.47358 * 179.97438 * 6 5 4 38 38 H 1.08997 * 109.47079 * 179.97438 * 7 6 5 39 39 H 1.09003 * 109.46389 * 59.99929 * 7 6 5 40 40 H 0.97000 * 119.99728 * 95.01025 * 10 8 7 41 41 H 1.09001 * 109.47071 * 300.00081 * 13 11 10 42 42 H 1.09000 * 109.46976 * 60.00296 * 13 11 10 43 43 H 0.96999 * 120.00053 * 179.97438 * 18 17 15 44 44 H 1.09004 * 109.47481 * 4.30524 * 27 26 23 45 45 H 1.09003 * 109.47221 * 124.30129 * 27 26 23 46 46 H 1.09002 * 109.47330 * 244.30285 * 27 26 23 47 47 H 1.08997 * 109.47262 * 89.99868 * 28 26 23 48 48 H 1.09000 * 109.47342 * 209.99915 * 28 26 23 49 49 H 1.09000 * 109.47195 * 329.99702 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5700 -0.7219 1.2489 6 6 4.0794 -1.4435 -0.0004 7 6 3.5694 -0.7222 -1.2497 8 6 2.0395 -0.7216 -1.2493 9 1 1.6761 -0.2081 -2.1395 10 7 1.5507 -2.1027 -1.2491 11 6 1.4214 -2.7720 -2.4117 12 8 1.7102 -2.2311 -3.4582 13 6 0.9180 -4.1925 -2.4115 14 7 0.8688 -4.6933 -3.7873 15 6 1.9905 -5.2297 -4.3612 16 1 2.1610 -5.1169 -5.4217 17 6 2.9084 -5.9180 -3.5800 18 7 2.5258 -6.4712 -2.4485 19 14 4.6866 -6.0595 -4.1343 20 1 5.2738 -4.7018 -4.2651 21 1 5.4572 -6.8381 -3.1316 22 1 4.7424 -6.7516 -5.4470 23 16 -0.5432 -4.6109 -4.6485 24 8 -0.5099 -5.6856 -5.5775 25 8 -1.5841 -4.4382 -3.6967 26 7 -0.4915 -3.2180 -5.5426 27 6 0.1870 -3.2059 -6.8410 28 6 -1.1241 -1.9980 -5.0353 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6767 -1.7490 1.2492 33 1 1.6767 -0.2075 2.1391 34 1 3.9334 -1.2354 2.1390 35 1 3.9338 0.3056 1.2486 36 1 3.7157 -2.4709 -0.0003 37 1 5.1695 -1.4435 -0.0009 38 1 3.9327 -1.2360 -2.1397 39 1 3.9332 0.3054 -1.2498 40 1 1.3199 -2.5353 -0.4121 41 1 1.5901 -4.8160 -1.8220 42 1 -0.0812 -4.2237 -1.9771 43 1 3.1671 -6.9525 -1.9027 44 1 0.5263 -4.2131 -7.0832 45 1 -0.5051 -2.8611 -7.6094 46 1 1.0445 -2.5344 -6.7967 47 1 -0.4017 -1.4315 -4.4476 48 1 -1.4666 -1.3908 -5.8733 49 1 -1.9746 -2.2637 -4.4076 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408007393.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:02 Heat of formation + Delta-G solvation = -134.373245 kcal Electronic energy + Delta-G solvation = -31929.325091 eV Core-core repulsion = 27824.262306 eV Total energy + Delta-G solvation = -4105.062784 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.17319 -39.19074 -38.14804 -36.95329 -36.88389 -36.64186 -34.46611 -33.38295 -33.25970 -31.07427 -28.98598 -28.67526 -27.03369 -25.85832 -25.33990 -23.46954 -22.35481 -21.75878 -20.36122 -19.89159 -19.39018 -18.54898 -18.35722 -17.79878 -17.00978 -16.61130 -16.38649 -16.23083 -15.85995 -15.53590 -15.45049 -15.11958 -15.00542 -14.78462 -14.59614 -14.19998 -13.89001 -13.68516 -13.63054 -13.48535 -13.33265 -13.21079 -13.11229 -13.05727 -12.81732 -12.74950 -12.63064 -12.57141 -12.51818 -12.43105 -12.36343 -12.25264 -12.05869 -11.76912 -11.38007 -11.22177 -11.16551 -10.87291 -10.65439 -9.92394 -9.76615 -9.57943 -8.20680 -5.91654 -0.11865 1.42578 1.44938 1.53202 1.93813 2.11454 2.43591 2.52605 2.79255 3.09891 3.61435 3.71588 3.86265 3.88602 3.99207 4.20034 4.22592 4.28039 4.41423 4.49927 4.52763 4.58833 4.60089 4.60609 4.73264 4.74841 4.75233 4.87122 4.90772 4.93652 4.94637 5.02217 5.10650 5.14925 5.17262 5.20486 5.33014 5.33365 5.36751 5.43731 5.48232 5.57293 5.67871 5.80855 5.84132 6.42020 6.77993 7.03930 7.41723 7.55395 8.82396 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010373 B = 0.005353 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.729147 B = 5229.527797 C = 6830.286838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 H 0.097 0.903 4 C -0.114 4.114 5 C -0.111 4.111 6 C -0.118 4.118 7 C -0.126 4.126 8 C 0.152 3.848 9 H 0.065 0.935 10 N -0.716 5.716 11 C 0.497 3.503 12 O -0.551 6.551 13 C 0.089 3.911 14 N -0.843 5.843 15 C -0.301 4.301 16 H 0.078 0.922 17 C 0.002 3.998 18 N -0.890 5.890 19 Si 0.962 3.038 20 H -0.280 1.280 21 H -0.277 1.277 22 H -0.270 1.270 23 S 2.768 3.232 24 O -1.019 7.019 25 O -1.025 7.025 26 N -1.006 6.006 27 C 0.097 3.903 28 C 0.093 3.907 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.045 0.955 37 H 0.058 0.942 38 H 0.030 0.970 39 H 0.084 0.916 40 H 0.404 0.596 41 H 0.130 0.870 42 H 0.091 0.909 43 H 0.269 0.731 44 H 0.061 0.939 45 H 0.086 0.914 46 H 0.059 0.941 47 H 0.047 0.953 48 H 0.097 0.903 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.224 15.439 7.549 17.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 H 0.115 0.885 4 C -0.152 4.152 5 C -0.148 4.148 6 C -0.156 4.156 7 C -0.165 4.165 8 C 0.048 3.952 9 H 0.084 0.916 10 N -0.371 5.371 11 C 0.282 3.718 12 O -0.429 6.429 13 C -0.042 4.042 14 N -0.675 5.675 15 C -0.434 4.434 16 H 0.096 0.904 17 C -0.201 4.201 18 N -0.531 5.531 19 Si 0.788 3.212 20 H -0.206 1.206 21 H -0.202 1.202 22 H -0.195 1.195 23 S 2.781 3.219 24 O -1.003 7.003 25 O -1.009 7.009 26 N -0.847 5.847 27 C -0.049 4.049 28 C -0.052 4.052 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.049 0.951 39 H 0.103 0.897 40 H 0.240 0.760 41 H 0.147 0.853 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.105 0.895 46 H 0.078 0.922 47 H 0.066 0.934 48 H 0.116 0.884 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.750 15.096 6.877 16.606 hybrid contribution 1.213 -0.481 -0.106 1.309 sum 0.463 14.616 6.771 16.114 Atomic orbital electron populations 1.21814 0.94509 1.01876 1.02175 1.21366 0.96102 1.00073 0.93074 0.88463 1.21617 0.95447 1.00561 0.97573 1.21495 0.95606 1.01029 0.96699 1.21482 1.00044 0.99116 0.94964 1.21857 0.95727 1.01293 0.97606 1.20953 0.93225 0.81942 0.99123 0.91637 1.46057 1.67758 1.14660 1.08605 1.21695 0.77255 0.88812 0.84041 1.90577 1.50303 1.69501 1.32477 1.21317 1.03475 0.91902 0.87549 1.52623 1.23954 1.69764 1.21142 1.18938 0.98729 1.31082 0.94636 0.90405 1.25775 1.02878 0.94313 0.97170 1.69958 1.35393 1.32188 1.15520 0.85461 0.79453 0.77862 0.78465 1.20586 1.20173 1.19495 1.02351 0.73160 0.73319 0.73024 1.93443 1.87568 1.53823 1.65422 1.93402 1.57464 1.87333 1.62660 1.57423 1.69248 1.26997 1.31031 1.21496 0.97548 1.02489 0.83334 1.21521 0.96871 0.86175 1.00611 0.93375 0.90791 0.93234 0.92547 0.89704 0.91277 0.90756 0.93651 0.92287 0.95142 0.89745 0.75965 0.85295 0.89063 0.92085 0.92016 0.89535 0.92215 0.93396 0.88431 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.03 71.98 0.65 -1.91 16 2 C -0.09 -1.53 2.52 -10.79 -0.03 -1.56 16 3 H 0.10 1.41 8.14 -2.39 -0.02 1.40 16 4 C -0.11 -1.78 5.03 30.59 0.15 -1.63 16 5 C -0.11 -1.81 5.92 30.59 0.18 -1.63 16 6 C -0.12 -2.72 5.77 30.60 0.18 -2.54 16 7 C -0.13 -3.25 5.60 30.60 0.17 -3.08 16 8 C 0.15 3.88 2.23 44.99 0.10 3.98 16 9 H 0.07 1.92 7.58 -2.39 -0.02 1.90 16 10 N -0.72 -21.62 3.54 -442.53 -1.57 -23.18 16 11 C 0.50 19.94 7.83 87.66 0.69 20.63 16 12 O -0.55 -24.71 14.94 -3.05 -0.05 -24.76 16 13 C 0.09 4.01 5.75 85.64 0.49 4.51 16 14 N -0.84 -42.63 2.43 -347.18 -0.84 -43.48 16 15 C -0.30 -16.37 8.83 84.03 0.74 -15.63 16 16 H 0.08 4.25 7.94 -2.91 -0.02 4.23 16 17 C 0.00 0.08 4.97 84.86 0.42 0.50 16 18 N -0.89 -47.51 11.25 21.65 0.24 -47.26 16 19 Si 0.96 42.97 29.62 68.60 2.03 45.00 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 21 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 23 S 2.77 133.56 6.04 -56.49 -0.34 133.22 16 24 O -1.02 -55.28 16.14 -128.00 -2.07 -57.35 16 25 O -1.02 -50.06 15.13 -128.00 -1.94 -52.00 16 26 N -1.01 -39.40 3.64 -562.70 -2.05 -41.45 16 27 C 0.10 3.31 10.68 127.77 1.36 4.68 16 28 C 0.09 3.02 10.67 127.77 1.36 4.38 16 29 H 0.05 0.96 7.44 -2.39 -0.02 0.94 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 0.97 6.50 -2.39 -0.02 0.96 16 33 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.04 1.23 7.60 -2.39 -0.02 1.21 16 37 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.40 10.61 6.65 -92.71 -0.62 10.00 16 41 H 0.13 6.23 5.27 -2.39 -0.01 6.22 16 42 H 0.09 3.91 6.88 -2.39 -0.02 3.90 16 43 H 0.27 13.55 8.31 -92.71 -0.77 12.78 16 44 H 0.06 2.34 7.00 -2.39 -0.02 2.33 16 45 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.05 1.62 7.06 -2.39 -0.02 1.61 16 48 H 0.10 2.40 8.07 -2.39 -0.02 2.38 16 49 H 0.07 2.22 7.00 -2.39 -0.02 2.20 16 Total: -1.00 -69.70 391.77 0.23 -69.47 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.33 Total: 31.09 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 6.48 Total: 10.69 kcal Atomic # 7 Polarization: -151.16 SS G_CDS: -4.21 Total: -155.37 kcal Atomic # 8 Polarization: -130.05 SS G_CDS: -4.05 Total: -134.10 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: 133.56 SS G_CDS: -0.34 Total: 133.22 kcal Total: -69.70 0.23 -69.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408007393.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.907 kcal (2) G-P(sol) polarization free energy of solvation -69.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds