Wall clock time and date at job start Wed Apr 1 2020 04:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47636 * 2 1 4 4 C 1.53003 * 109.47390 * 120.00584 * 2 1 3 5 5 C 1.52998 * 109.47121 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47479 * 299.99923 * 5 4 2 7 7 C 1.53003 * 109.46882 * 59.99931 * 6 5 4 8 8 C 1.52996 * 109.47390 * 300.00024 * 7 6 5 9 9 H 1.09007 * 109.46909 * 300.00278 * 8 7 6 10 10 N 1.46495 * 109.47428 * 180.02562 * 8 7 6 11 11 C 1.34781 * 120.00023 * 84.99954 * 10 8 7 12 12 O 1.21282 * 119.99593 * 0.02562 * 11 10 8 13 13 C 1.50703 * 120.00100 * 180.02562 * 11 10 8 14 14 N 1.46502 * 109.46895 * 180.02562 * 13 11 10 15 15 C 1.36932 * 120.00090 * 85.00242 * 14 13 11 16 16 H 1.07998 * 119.99847 * 214.33933 * 15 14 13 17 17 C 1.38811 * 120.00195 * 34.33411 * 15 14 13 18 18 N 1.31621 * 119.99799 * 23.18363 * 17 15 14 19 19 Si 1.86806 * 120.00389 * 203.18502 * 17 15 14 20 20 H 1.48499 * 109.46792 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47073 * 119.99999 * 19 17 15 22 22 H 1.48498 * 109.46827 * 240.00402 * 19 17 15 23 23 S 1.65600 * 119.99781 * 264.99560 * 14 13 11 24 24 O 1.42097 * 106.40049 * 200.45696 * 23 14 13 25 25 O 1.42104 * 106.40328 * 333.38467 * 23 14 13 26 26 N 1.65603 * 107.21490 * 86.92177 * 23 14 13 27 27 C 1.46501 * 120.00137 * 90.00058 * 26 23 14 28 28 C 1.46500 * 119.99928 * 269.99576 * 26 23 14 29 29 H 1.08998 * 109.47036 * 299.99358 * 1 2 3 30 30 H 1.08990 * 109.47355 * 59.99768 * 1 2 3 31 31 H 1.09007 * 109.46909 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47189 * 59.99941 * 4 2 1 33 33 H 1.08998 * 109.47078 * 300.00032 * 4 2 1 34 34 H 1.08997 * 109.46921 * 60.00042 * 5 4 2 35 35 H 1.09007 * 109.47111 * 179.97438 * 5 4 2 36 36 H 1.08994 * 109.47440 * 179.97438 * 6 5 4 37 37 H 1.08997 * 109.47142 * 299.99984 * 6 5 4 38 38 H 1.08999 * 109.46839 * 60.00480 * 7 6 5 39 39 H 1.09001 * 109.46719 * 180.02562 * 7 6 5 40 40 H 0.96994 * 119.99938 * 265.00126 * 10 8 7 41 41 H 1.09006 * 109.46767 * 300.00263 * 13 11 10 42 42 H 1.09001 * 109.46623 * 59.99923 * 13 11 10 43 43 H 0.97003 * 120.00031 * 179.97438 * 18 17 15 44 44 H 1.08995 * 109.47241 * 89.99526 * 27 26 23 45 45 H 1.08997 * 109.47289 * 210.00179 * 27 26 23 46 46 H 1.09001 * 109.46569 * 329.99622 * 27 26 23 47 47 H 1.09005 * 109.47023 * 60.00468 * 28 26 23 48 48 H 1.09002 * 109.47256 * 180.02562 * 28 26 23 49 49 H 1.09001 * 109.47364 * 300.00419 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5700 -0.7219 1.2488 6 6 4.0795 -1.4434 -0.0005 7 6 3.5695 -0.7220 -1.2497 8 6 2.0395 -0.7215 -1.2494 9 1 1.6758 -1.7491 -1.2492 10 7 1.5511 -0.0313 -2.4457 11 6 1.4219 -0.7042 -3.6064 12 8 1.7096 -1.8812 -3.6602 13 6 0.9201 0.0059 -4.8372 14 7 0.8696 -0.9362 -5.9580 15 6 -0.2286 -1.7356 -6.1316 16 1 -0.1123 -2.7351 -6.5238 17 6 -1.4912 -1.2613 -5.8033 18 7 -1.7188 0.0346 -5.7684 19 14 -2.8673 -2.4622 -5.4111 20 1 -2.3570 -3.8525 -5.5204 21 1 -3.3561 -2.2209 -4.0298 22 1 -3.9826 -2.2679 -6.3720 23 16 2.1405 -1.0343 -7.0151 24 8 1.6308 -1.6276 -8.2014 25 8 2.7795 0.2348 -6.9932 26 7 3.2238 -2.1141 -6.3803 27 6 3.1199 -3.5371 -6.7128 28 6 4.2860 -1.6464 -5.4863 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6767 -1.7490 1.2491 33 1 1.6767 -0.2077 2.1392 34 1 3.9337 0.3056 1.2487 35 1 3.9334 -1.2355 2.1390 36 1 5.1695 -1.4433 -0.0010 37 1 3.7159 -2.4709 -0.0004 38 1 3.9332 0.3055 -1.2498 39 1 3.9321 -1.2363 -2.1397 40 1 1.3207 0.9099 -2.4026 41 1 -0.0789 0.3989 -4.6480 42 1 1.5932 0.8273 -5.0825 43 1 -2.6012 0.3660 -5.5394 44 1 3.7115 -3.7461 -7.6041 45 1 3.4941 -4.1330 -5.8804 46 1 2.0768 -3.7909 -6.9013 47 1 3.8417 -1.1735 -4.6105 48 1 4.8957 -2.4935 -5.1722 49 1 4.9110 -0.9242 -6.0114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408007395.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:05 Heat of formation + Delta-G solvation = -138.971575 kcal Electronic energy + Delta-G solvation = -31674.870147 eV Core-core repulsion = 27569.607965 eV Total energy + Delta-G solvation = -4105.262183 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.00565 -39.21875 -38.12755 -36.99687 -36.88407 -36.64611 -34.96491 -33.35163 -33.27890 -30.83081 -29.00194 -28.60674 -27.05686 -25.88225 -25.36344 -23.47425 -22.13796 -21.37954 -20.74275 -20.38108 -19.30802 -18.53312 -18.39602 -17.61940 -17.14693 -16.93567 -16.39330 -15.93397 -15.60184 -15.45686 -15.34633 -15.28693 -15.01677 -14.94158 -14.56742 -14.27141 -14.06319 -13.75023 -13.60591 -13.42683 -13.36461 -13.25648 -13.17800 -13.07535 -12.80113 -12.77893 -12.63483 -12.56542 -12.49616 -12.39296 -12.28641 -12.09424 -12.00879 -11.77621 -11.41840 -11.33499 -11.19067 -11.07765 -10.62554 -9.91641 -9.80436 -9.57548 -8.22164 -5.94838 -0.12561 1.40149 1.44416 1.56753 1.91428 2.09644 2.41935 2.51866 2.79741 3.07916 3.59150 3.68253 3.82532 3.95076 3.99144 4.16894 4.22335 4.31114 4.40033 4.47526 4.52762 4.53451 4.54868 4.59898 4.61729 4.74961 4.78811 4.83391 4.87910 4.89092 4.92729 5.01696 5.12554 5.14583 5.19843 5.22180 5.31047 5.31623 5.35394 5.39308 5.45768 5.58399 5.68034 5.77587 5.81834 6.42336 6.77332 7.01548 7.40968 7.53453 8.81335 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010471 B = 0.004984 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.473290 B = 5617.160399 C = 7306.274138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 H 0.090 0.910 4 C -0.108 4.108 5 C -0.115 4.115 6 C -0.113 4.113 7 C -0.125 4.125 8 C 0.152 3.848 9 H 0.055 0.945 10 N -0.722 5.722 11 C 0.497 3.503 12 O -0.548 6.548 13 C 0.090 3.910 14 N -0.844 5.844 15 C -0.300 4.300 16 H 0.076 0.924 17 C 0.001 3.999 18 N -0.891 5.891 19 Si 0.965 3.035 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.278 1.278 23 S 2.767 3.233 24 O -1.017 7.017 25 O -1.027 7.027 26 N -1.007 6.007 27 C 0.103 3.897 28 C 0.101 3.899 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.038 0.962 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.044 0.956 40 H 0.407 0.593 41 H 0.129 0.871 42 H 0.092 0.908 43 H 0.270 0.730 44 H 0.064 0.936 45 H 0.088 0.912 46 H 0.049 0.951 47 H 0.043 0.957 48 H 0.100 0.900 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.791 0.211 16.195 18.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 H 0.108 0.892 4 C -0.146 4.146 5 C -0.153 4.153 6 C -0.151 4.151 7 C -0.164 4.164 8 C 0.048 3.952 9 H 0.073 0.927 10 N -0.376 5.376 11 C 0.282 3.718 12 O -0.425 6.425 13 C -0.041 4.041 14 N -0.675 5.675 15 C -0.432 4.432 16 H 0.094 0.906 17 C -0.202 4.202 18 N -0.532 5.532 19 Si 0.790 3.210 20 H -0.195 1.195 21 H -0.201 1.201 22 H -0.204 1.204 23 S 2.780 3.220 24 O -1.001 7.001 25 O -1.011 7.011 26 N -0.848 5.848 27 C -0.042 4.042 28 C -0.044 4.044 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.243 0.757 41 H 0.146 0.854 42 H 0.110 0.890 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.107 0.893 46 H 0.068 0.932 47 H 0.061 0.939 48 H 0.118 0.882 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.039 -0.074 15.289 18.291 hybrid contribution -1.174 -0.321 0.103 1.222 sum 8.865 -0.395 15.393 17.767 Atomic orbital electron populations 1.21817 0.95256 1.01273 1.02090 1.21371 0.95517 1.00454 0.93491 0.89186 1.21553 0.96009 1.00347 0.96714 1.21543 0.94970 1.01305 0.97447 1.21474 1.00788 0.98922 0.93932 1.21888 0.94595 1.01462 0.98420 1.20993 0.93977 0.96243 0.84015 0.92709 1.46055 1.68034 1.14339 1.09145 1.21681 0.76636 0.87838 0.85641 1.90594 1.49930 1.16568 1.85398 1.21308 1.06044 0.91869 0.84901 1.52628 1.29640 1.49039 1.36225 1.19009 0.84767 0.95038 1.44418 0.90593 1.25851 0.99300 0.97227 0.97863 1.69977 1.23235 1.13065 1.46909 0.85312 0.78464 0.79289 0.77965 1.19497 1.20102 1.20414 1.02504 0.73033 0.72739 0.73674 1.93432 1.80213 1.79186 1.47272 1.93416 1.77535 1.42258 1.87886 1.57497 1.44301 1.19689 1.63297 1.21463 1.01641 0.79651 1.01477 1.21486 0.89539 1.01023 0.92331 0.90816 0.93449 0.94264 0.92720 0.89964 0.90960 0.90694 0.90837 0.92963 0.90812 0.93714 0.75749 0.85420 0.89001 0.92009 0.91750 0.89310 0.93233 0.93867 0.88174 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.03 71.98 0.65 -2.39 16 2 C -0.09 -1.66 2.30 -10.79 -0.02 -1.69 16 3 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 4 C -0.11 -1.65 5.20 30.59 0.16 -1.49 16 5 C -0.12 -1.57 5.92 30.59 0.18 -1.39 16 6 C -0.11 -1.98 5.92 30.59 0.18 -1.80 16 7 C -0.12 -2.79 5.49 30.59 0.17 -2.62 16 8 C 0.15 3.85 1.90 44.99 0.09 3.93 16 9 H 0.05 1.73 7.58 -2.38 -0.02 1.71 16 10 N -0.72 -21.30 4.38 -442.52 -1.94 -23.24 16 11 C 0.50 19.58 7.10 87.66 0.62 20.20 16 12 O -0.55 -24.16 15.03 -3.04 -0.05 -24.21 16 13 C 0.09 4.03 5.78 85.63 0.49 4.52 16 14 N -0.84 -42.80 2.42 -347.17 -0.84 -43.64 16 15 C -0.30 -16.41 8.73 84.03 0.73 -15.67 16 16 H 0.08 4.25 7.92 -2.91 -0.02 4.23 16 17 C 0.00 0.03 4.99 84.86 0.42 0.45 16 18 N -0.89 -47.63 11.30 21.65 0.24 -47.38 16 19 Si 0.96 42.97 29.61 68.60 2.03 45.00 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 21 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 22 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 23 S 2.77 134.62 6.03 -56.49 -0.34 134.28 16 24 O -1.02 -55.56 16.37 -128.00 -2.10 -57.66 16 25 O -1.03 -51.16 15.92 -128.00 -2.04 -53.20 16 26 N -1.01 -39.35 3.64 -562.68 -2.05 -41.40 16 27 C 0.10 3.50 10.26 127.77 1.31 4.81 16 28 C 0.10 3.26 10.23 127.77 1.31 4.57 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.05 1.10 7.45 -2.39 -0.02 1.09 16 31 H 0.04 0.92 8.14 -2.38 -0.02 0.91 16 32 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.41 10.03 8.39 -92.71 -0.78 9.25 16 41 H 0.13 6.11 5.34 -2.38 -0.01 6.10 16 42 H 0.09 3.89 6.96 -2.39 -0.02 3.87 16 43 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 44 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.09 2.51 7.92 -2.39 -0.02 2.49 16 46 H 0.05 1.89 7.79 -2.39 -0.02 1.88 16 47 H 0.04 1.47 6.39 -2.38 -0.02 1.46 16 48 H 0.10 2.53 7.79 -2.39 -0.02 2.51 16 49 H 0.06 1.83 8.01 -2.39 -0.02 1.81 16 Total: -1.00 -70.46 396.43 -0.62 -71.07 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: 0.16 Total: 28.95 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 6.29 Total: 11.43 kcal Atomic # 7 Polarization: -151.08 SS G_CDS: -4.58 Total: -155.67 kcal Atomic # 8 Polarization: -130.89 SS G_CDS: -4.18 Total: -135.07 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: 134.62 SS G_CDS: -0.34 Total: 134.28 kcal Total: -70.46 -0.62 -71.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408007395.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.897 kcal (2) G-P(sol) polarization free energy of solvation -70.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds