Wall clock time and date at job start Wed Apr 1 2020 04:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46694 * 2 1 4 4 C 1.52992 * 109.47487 * 240.00167 * 2 1 3 5 5 C 1.52995 * 109.47487 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47499 * 59.99723 * 5 4 2 7 7 C 1.52998 * 109.46694 * 300.00514 * 6 5 4 8 8 C 1.52995 * 109.47568 * 59.99528 * 7 6 5 9 9 H 1.09007 * 109.46694 * 59.99869 * 8 7 6 10 10 N 1.46503 * 109.47293 * 179.97438 * 8 7 6 11 11 C 1.34776 * 119.99964 * 275.00433 * 10 8 7 12 12 O 1.21276 * 120.00244 * 359.97438 * 11 10 8 13 13 C 1.50699 * 119.99607 * 179.97438 * 11 10 8 14 14 N 1.46504 * 109.47129 * 179.97438 * 13 11 10 15 15 C 1.36940 * 120.00271 * 275.00171 * 14 13 11 16 16 H 1.07998 * 120.00194 * 139.58202 * 15 14 13 17 17 C 1.38812 * 119.99378 * 319.58374 * 15 14 13 18 18 N 1.31626 * 119.99344 * 156.87039 * 17 15 14 19 19 Si 1.86801 * 120.00368 * 336.86091 * 17 15 14 20 20 H 1.48502 * 109.46831 * 95.26983 * 19 17 15 21 21 H 1.48494 * 109.47065 * 215.26771 * 19 17 15 22 22 H 1.48499 * 109.46898 * 335.26909 * 19 17 15 23 23 S 1.65602 * 120.00026 * 94.99929 * 14 13 11 24 24 O 1.42101 * 106.40443 * 162.00463 * 23 14 13 25 25 O 1.42098 * 106.40188 * 29.08373 * 23 14 13 26 26 N 1.65602 * 107.21843 * 275.54728 * 23 14 13 27 27 C 1.46503 * 120.00222 * 94.31556 * 26 23 14 28 28 C 1.46507 * 119.99804 * 274.32133 * 26 23 14 29 29 H 1.09003 * 109.47374 * 299.99768 * 1 2 3 30 30 H 1.09000 * 109.47541 * 60.00282 * 1 2 3 31 31 H 1.08999 * 109.47057 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46802 * 299.99948 * 4 2 1 33 33 H 1.09000 * 109.47097 * 59.99278 * 4 2 1 34 34 H 1.09003 * 109.47374 * 180.02562 * 5 4 2 35 35 H 1.08999 * 109.47057 * 299.99792 * 5 4 2 36 36 H 1.09000 * 109.46423 * 60.00189 * 6 5 4 37 37 H 1.08990 * 109.47239 * 180.02562 * 6 5 4 38 38 H 1.08999 * 109.47005 * 299.99407 * 7 6 5 39 39 H 1.09000 * 109.46813 * 180.02562 * 7 6 5 40 40 H 0.96997 * 119.99745 * 94.99852 * 10 8 7 41 41 H 1.09002 * 109.47440 * 59.99788 * 13 11 10 42 42 H 1.08996 * 109.47544 * 299.99648 * 13 11 10 43 43 H 0.97001 * 119.99370 * 179.97438 * 18 17 15 44 44 H 1.09006 * 109.47082 * 179.97438 * 27 26 23 45 45 H 1.08999 * 109.47361 * 300.00329 * 27 26 23 46 46 H 1.09000 * 109.46664 * 60.00388 * 27 26 23 47 47 H 1.09004 * 109.46384 * 265.54484 * 28 26 23 48 48 H 1.08998 * 109.46952 * 25.53920 * 28 26 23 49 49 H 1.08999 * 109.46956 * 145.54364 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7217 -1.2488 6 6 4.0795 -1.4433 0.0004 7 6 3.5694 -0.7221 1.2496 8 6 2.0395 -0.7215 1.2492 9 1 1.6758 -1.7491 1.2490 10 7 1.5511 -0.0314 2.4457 11 6 1.4220 -0.7043 3.6063 12 8 1.7096 -1.8813 3.6601 13 6 0.9201 0.0057 4.8371 14 7 0.8696 -0.9363 5.9579 15 6 -0.2285 -1.7358 6.1315 16 1 -0.1046 -2.7663 6.4299 17 6 -1.5011 -1.2215 5.9239 18 7 -2.4994 -2.0307 5.6391 19 14 -1.7967 0.6187 6.0489 20 1 -1.7223 1.2250 4.6954 21 1 -3.1413 0.8657 6.6287 22 1 -0.7616 1.2281 6.9220 23 16 2.1406 -1.0345 7.0150 24 8 1.6450 -1.6804 8.1797 25 8 2.7445 0.2516 7.0369 26 7 3.2544 -2.0627 6.3482 27 6 4.3605 -1.5272 5.5506 28 6 3.1336 -3.5080 6.5559 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6767 -1.7488 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.9334 -1.2351 -2.1391 35 1 3.9337 0.3058 -1.2486 36 1 3.7158 -2.4708 0.0001 37 1 5.1694 -1.4433 0.0008 38 1 3.9331 0.3055 1.2498 39 1 3.9328 -1.2358 2.1396 40 1 1.3208 0.9099 2.4026 41 1 -0.0788 0.3988 4.6480 42 1 1.5932 0.8272 5.0826 43 1 -3.3887 -1.6714 5.4944 44 1 4.9852 -2.3481 5.1984 45 1 3.9611 -0.9814 4.6958 46 1 4.9583 -0.8537 6.1647 47 1 3.7435 -3.8046 7.4093 48 1 2.0912 -3.7614 6.7487 49 1 3.4763 -4.0330 5.6643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408007396.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:10 Heat of formation + Delta-G solvation = -108.740366 kcal Electronic energy + Delta-G solvation = -31719.296082 eV Core-core repulsion = 27615.344823 eV Total energy + Delta-G solvation = -4103.951259 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -39.88908 -38.12291 -36.34497 -35.47050 -35.32681 -34.86542 -33.86097 -32.49625 -31.80490 -29.83110 -27.65935 -27.25833 -26.04986 -24.26477 -23.76719 -22.58918 -21.34033 -20.24722 -19.87435 -18.45936 -17.71791 -17.04236 -16.76696 -16.29602 -15.96058 -15.47269 -14.93617 -14.81416 -14.54268 -14.31798 -14.12340 -14.05712 -13.69674 -13.44581 -13.30469 -12.97635 -12.70141 -12.58716 -12.53995 -12.38244 -12.15855 -11.99610 -11.94391 -11.64735 -11.58512 -11.28462 -11.25284 -11.07834 -11.02941 -10.97799 -10.85736 -10.81287 -10.64537 -10.53044 -10.35308 -10.21724 -10.02776 -9.49359 -8.88421 -8.64671 -8.44582 -8.02418 -6.33913 -3.95570 1.53057 3.03330 3.19592 3.31109 3.34228 3.42716 3.87658 4.21857 4.37635 4.52471 4.61245 4.75751 4.95927 4.97814 5.09361 5.21447 5.28380 5.32077 5.35156 5.35550 5.40204 5.49766 5.62094 5.67085 5.68610 5.76803 5.81117 5.83096 5.90522 5.93529 5.94355 6.02092 6.04885 6.05443 6.06682 6.09926 6.23870 6.28047 6.29656 6.40462 6.46537 6.77559 6.87801 7.17800 7.73181 7.92376 8.35655 8.82431 9.12864 9.21177 10.77018 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011313 B = 0.004989 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.397830 B = 5611.204719 C = 7183.882299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 H 0.072 0.928 4 C -0.111 4.111 5 C -0.120 4.120 6 C -0.116 4.116 7 C -0.129 4.129 8 C 0.153 3.847 9 H 0.087 0.913 10 N -0.739 5.739 11 C 0.496 3.504 12 O -0.504 6.504 13 C 0.086 3.914 14 N -0.854 5.854 15 C -0.297 4.297 16 H 0.103 0.897 17 C 0.070 3.930 18 N -0.860 5.860 19 Si 0.858 3.142 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.260 1.260 23 S 2.766 3.234 24 O -0.972 6.972 25 O -1.014 7.014 26 N -1.006 6.006 27 C 0.107 3.893 28 C 0.109 3.891 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.394 0.606 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.271 0.729 44 H 0.069 0.931 45 H 0.048 0.952 46 H 0.053 0.947 47 H 0.043 0.957 48 H 0.076 0.924 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.120 4.261 -13.393 17.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 H 0.090 0.910 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.154 4.154 7 C -0.168 4.168 8 C 0.048 3.952 9 H 0.105 0.895 10 N -0.393 5.393 11 C 0.281 3.719 12 O -0.377 6.377 13 C -0.045 4.045 14 N -0.685 5.685 15 C -0.429 4.429 16 H 0.120 0.880 17 C -0.139 4.139 18 N -0.497 5.497 19 Si 0.685 3.315 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.184 1.184 23 S 2.779 3.221 24 O -0.955 6.955 25 O -0.997 6.997 26 N -0.845 5.845 27 C -0.040 4.040 28 C -0.037 4.037 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.227 0.773 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.062 0.938 48 H 0.094 0.906 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.294 3.752 -12.446 17.221 hybrid contribution -0.598 1.209 -0.601 1.477 sum 10.697 4.961 -13.048 17.587 Atomic orbital electron populations 1.21827 0.94611 1.02455 1.01659 1.21389 0.96149 0.99703 0.94379 0.90960 1.21550 0.95445 1.00951 0.96922 1.21560 0.95639 1.00687 0.97861 1.21486 1.00087 0.99680 0.94171 1.21935 0.95737 1.00755 0.98355 1.20889 0.93022 0.97716 0.83612 0.89514 1.46230 1.69408 1.13783 1.09874 1.21693 0.77319 0.88295 0.84639 1.90658 1.47475 1.15057 1.84480 1.21612 1.03113 0.93219 0.86563 1.53081 1.31811 1.49254 1.34403 1.18530 0.82260 0.93775 1.48337 0.87956 1.25361 0.95313 0.97654 0.95526 1.69884 1.01490 1.35587 1.42734 0.87216 0.78689 0.87083 0.78490 1.20263 1.21022 1.18409 1.02876 0.72498 0.72783 0.73925 1.93523 1.79538 1.76650 1.45809 1.93464 1.78354 1.40359 1.87533 1.57664 1.40947 1.17745 1.68163 1.21260 0.89268 0.98838 0.94608 1.21305 1.02669 0.79546 1.00206 0.92234 0.92841 0.92397 0.91667 0.91803 0.92125 0.92090 0.91791 0.92040 0.92072 0.91283 0.77283 0.88751 0.88358 0.91833 0.91230 0.93290 0.92810 0.93798 0.90565 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.03 37.16 0.34 -1.27 16 2 C -0.10 -0.97 2.30 -90.63 -0.21 -1.18 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.11 -0.97 5.20 -26.74 -0.14 -1.10 16 5 C -0.12 -0.98 5.92 -26.73 -0.16 -1.13 16 6 C -0.12 -1.10 5.92 -26.73 -0.16 -1.25 16 7 C -0.13 -1.46 5.49 -26.73 -0.15 -1.60 16 8 C 0.15 1.92 1.90 -67.93 -0.13 1.79 16 9 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 10 N -0.74 -10.55 4.38 -53.81 -0.24 -10.79 16 11 C 0.50 9.34 7.33 -10.99 -0.08 9.26 16 12 O -0.50 -10.81 15.70 5.56 0.09 -10.72 16 13 C 0.09 1.77 5.13 -5.19 -0.03 1.74 16 14 N -0.85 -20.43 1.99 -61.08 -0.12 -20.55 16 15 C -0.30 -8.08 9.10 -15.06 -0.14 -8.21 16 16 H 0.10 3.01 8.06 -52.49 -0.42 2.59 16 17 C 0.07 1.90 5.30 -17.43 -0.09 1.81 16 18 N -0.86 -24.57 13.97 55.49 0.78 -23.80 16 19 Si 0.86 20.30 25.24 -169.99 -4.29 16.01 16 20 H -0.28 -5.91 6.67 56.52 0.38 -5.53 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.26 -6.17 7.11 56.52 0.40 -5.77 16 23 S 2.77 63.51 6.00 -107.50 -0.64 62.86 16 24 O -0.97 -25.09 16.42 -57.17 -0.94 -26.03 16 25 O -1.01 -23.43 15.93 -57.17 -0.91 -24.34 16 26 N -1.01 -19.12 3.64 -129.19 -0.47 -19.59 16 27 C 0.11 1.67 10.25 59.85 0.61 2.28 16 28 C 0.11 1.87 10.29 59.85 0.62 2.49 16 29 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.39 4.63 8.39 -40.82 -0.34 4.29 16 41 H 0.09 1.98 3.50 -51.93 -0.18 1.80 16 42 H 0.10 1.79 6.99 -51.93 -0.36 1.43 16 43 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.07 0.90 7.85 -51.93 -0.41 0.49 16 45 H 0.05 0.78 7.32 -51.93 -0.38 0.40 16 46 H 0.05 0.79 8.04 -51.93 -0.42 0.37 16 47 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.08 1.47 7.75 -51.93 -0.40 1.07 16 49 H 0.06 0.95 8.02 -51.93 -0.42 0.53 16 LS Contribution 394.28 15.07 5.94 5.94 Total: -1.00 -32.85 394.28 -8.87 -41.72 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -8.35 Total: 5.66 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 0.29 Total: 3.62 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -0.05 Total: -74.72 kcal Atomic # 8 Polarization: -59.33 SS G_CDS: -1.76 Total: -61.09 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.29 Total: 16.01 kcal Atomic # 16 Polarization: 63.51 SS G_CDS: -0.64 Total: 62.86 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.85 -8.87 -41.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408007396.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.018 kcal (2) G-P(sol) polarization free energy of solvation -32.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds