Wall clock time and date at job start Wed Apr 1 2020 04:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46694 * 2 1 4 4 C 1.52992 * 109.47487 * 240.00167 * 2 1 3 5 5 C 1.52995 * 109.47487 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47499 * 59.99723 * 5 4 2 7 7 C 1.52998 * 109.46694 * 300.00514 * 6 5 4 8 8 C 1.52995 * 109.47568 * 59.99528 * 7 6 5 9 9 H 1.09007 * 109.46694 * 59.99869 * 8 7 6 10 10 N 1.46503 * 109.47293 * 179.97438 * 8 7 6 11 11 C 1.34776 * 119.99964 * 275.00433 * 10 8 7 12 12 O 1.21276 * 120.00244 * 359.97438 * 11 10 8 13 13 C 1.50699 * 119.99607 * 179.97438 * 11 10 8 14 14 N 1.46504 * 109.47129 * 179.97438 * 13 11 10 15 15 C 1.36940 * 120.00271 * 275.00171 * 14 13 11 16 16 H 1.07998 * 120.00194 * 139.58202 * 15 14 13 17 17 C 1.38812 * 119.99378 * 319.58374 * 15 14 13 18 18 N 1.31626 * 119.99344 * 156.87039 * 17 15 14 19 19 Si 1.86801 * 120.00368 * 336.86091 * 17 15 14 20 20 H 1.48502 * 109.46831 * 95.26983 * 19 17 15 21 21 H 1.48494 * 109.47065 * 215.26771 * 19 17 15 22 22 H 1.48499 * 109.46898 * 335.26909 * 19 17 15 23 23 S 1.65602 * 120.00026 * 94.99929 * 14 13 11 24 24 O 1.42101 * 106.40443 * 162.00463 * 23 14 13 25 25 O 1.42098 * 106.40188 * 29.08373 * 23 14 13 26 26 N 1.65602 * 107.21843 * 275.54728 * 23 14 13 27 27 C 1.46503 * 120.00222 * 94.31556 * 26 23 14 28 28 C 1.46507 * 119.99804 * 274.32133 * 26 23 14 29 29 H 1.09003 * 109.47374 * 299.99768 * 1 2 3 30 30 H 1.09000 * 109.47541 * 60.00282 * 1 2 3 31 31 H 1.08999 * 109.47057 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46802 * 299.99948 * 4 2 1 33 33 H 1.09000 * 109.47097 * 59.99278 * 4 2 1 34 34 H 1.09003 * 109.47374 * 180.02562 * 5 4 2 35 35 H 1.08999 * 109.47057 * 299.99792 * 5 4 2 36 36 H 1.09000 * 109.46423 * 60.00189 * 6 5 4 37 37 H 1.08990 * 109.47239 * 180.02562 * 6 5 4 38 38 H 1.08999 * 109.47005 * 299.99407 * 7 6 5 39 39 H 1.09000 * 109.46813 * 180.02562 * 7 6 5 40 40 H 0.96997 * 119.99745 * 94.99852 * 10 8 7 41 41 H 1.09002 * 109.47440 * 59.99788 * 13 11 10 42 42 H 1.08996 * 109.47544 * 299.99648 * 13 11 10 43 43 H 0.97001 * 119.99370 * 179.97438 * 18 17 15 44 44 H 1.09006 * 109.47082 * 179.97438 * 27 26 23 45 45 H 1.08999 * 109.47361 * 300.00329 * 27 26 23 46 46 H 1.09000 * 109.46664 * 60.00388 * 27 26 23 47 47 H 1.09004 * 109.46384 * 265.54484 * 28 26 23 48 48 H 1.08998 * 109.46952 * 25.53920 * 28 26 23 49 49 H 1.08999 * 109.46956 * 145.54364 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7217 -1.2488 6 6 4.0795 -1.4433 0.0004 7 6 3.5694 -0.7221 1.2496 8 6 2.0395 -0.7215 1.2492 9 1 1.6758 -1.7491 1.2490 10 7 1.5511 -0.0314 2.4457 11 6 1.4220 -0.7043 3.6063 12 8 1.7096 -1.8813 3.6601 13 6 0.9201 0.0057 4.8371 14 7 0.8696 -0.9363 5.9579 15 6 -0.2285 -1.7358 6.1315 16 1 -0.1046 -2.7663 6.4299 17 6 -1.5011 -1.2215 5.9239 18 7 -2.4994 -2.0307 5.6391 19 14 -1.7967 0.6187 6.0489 20 1 -1.7223 1.2250 4.6954 21 1 -3.1413 0.8657 6.6287 22 1 -0.7616 1.2281 6.9220 23 16 2.1406 -1.0345 7.0150 24 8 1.6450 -1.6804 8.1797 25 8 2.7445 0.2516 7.0369 26 7 3.2544 -2.0627 6.3482 27 6 4.3605 -1.5272 5.5506 28 6 3.1336 -3.5080 6.5559 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6767 -1.7488 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.9334 -1.2351 -2.1391 35 1 3.9337 0.3058 -1.2486 36 1 3.7158 -2.4708 0.0001 37 1 5.1694 -1.4433 0.0008 38 1 3.9331 0.3055 1.2498 39 1 3.9328 -1.2358 2.1396 40 1 1.3208 0.9099 2.4026 41 1 -0.0788 0.3988 4.6480 42 1 1.5932 0.8272 5.0826 43 1 -3.3887 -1.6714 5.4944 44 1 4.9852 -2.3481 5.1984 45 1 3.9611 -0.9814 4.6958 46 1 4.9583 -0.8537 6.1647 47 1 3.7435 -3.8046 7.4093 48 1 2.0912 -3.7614 6.7487 49 1 3.4763 -4.0330 5.6643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408007396.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:09 Heat of formation + Delta-G solvation = -133.186592 kcal Electronic energy + Delta-G solvation = -31720.356150 eV Core-core repulsion = 27615.344823 eV Total energy + Delta-G solvation = -4105.011327 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.10761 -39.31360 -38.23037 -37.12927 -36.95191 -36.74618 -35.04870 -33.83625 -33.36298 -30.91826 -29.04548 -28.68536 -27.05279 -26.03192 -25.38544 -23.58857 -22.16763 -21.53809 -20.84752 -20.32980 -19.40933 -18.71995 -18.51202 -17.86012 -17.37576 -17.04651 -16.59338 -16.01337 -15.54891 -15.49953 -15.39292 -15.30067 -15.07058 -14.81462 -14.74766 -14.39502 -14.28624 -14.11523 -13.76057 -13.65386 -13.44909 -13.29815 -13.27748 -13.14318 -12.99020 -12.79374 -12.76502 -12.64808 -12.46946 -12.43997 -12.21558 -12.08740 -11.92376 -11.78182 -11.44794 -11.37123 -11.19217 -11.06857 -10.65910 -10.02650 -9.88516 -9.82307 -8.41806 -6.07041 -0.24206 1.16335 1.34408 1.43812 1.78408 1.94596 2.24226 2.38571 2.58066 2.96870 3.47296 3.66613 3.80369 3.89191 3.93354 4.01882 4.07204 4.21201 4.27014 4.30689 4.45038 4.50847 4.52579 4.53936 4.59249 4.60420 4.73308 4.78375 4.83310 4.87968 4.89234 4.96803 5.01125 5.11674 5.14456 5.19666 5.22465 5.30291 5.31505 5.38714 5.45108 5.56941 5.63233 5.71356 5.75577 6.18196 6.67702 7.06245 7.11979 7.42885 8.73439 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011313 B = 0.004989 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.397830 B = 5611.204719 C = 7183.882299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 H 0.094 0.906 4 C -0.109 4.109 5 C -0.115 4.115 6 C -0.114 4.114 7 C -0.124 4.124 8 C 0.151 3.849 9 H 0.052 0.948 10 N -0.721 5.721 11 C 0.497 3.503 12 O -0.538 6.538 13 C 0.075 3.925 14 N -0.864 5.864 15 C -0.301 4.301 16 H 0.061 0.939 17 C 0.022 3.978 18 N -0.907 5.907 19 Si 0.909 3.091 20 H -0.236 1.236 21 H -0.284 1.284 22 H -0.260 1.260 23 S 2.777 3.223 24 O -1.008 7.008 25 O -1.014 7.014 26 N -1.004 6.004 27 C 0.099 3.901 28 C 0.106 3.894 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.036 0.964 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.045 0.955 40 H 0.409 0.591 41 H 0.093 0.907 42 H 0.124 0.876 43 H 0.275 0.725 44 H 0.100 0.900 45 H 0.045 0.955 46 H 0.066 0.934 47 H 0.069 0.931 48 H 0.044 0.956 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.172 6.836 -15.728 21.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 H 0.113 0.887 4 C -0.147 4.147 5 C -0.152 4.152 6 C -0.152 4.152 7 C -0.162 4.162 8 C 0.047 3.953 9 H 0.071 0.929 10 N -0.375 5.375 11 C 0.281 3.719 12 O -0.414 6.414 13 C -0.055 4.055 14 N -0.696 5.696 15 C -0.433 4.433 16 H 0.078 0.922 17 C -0.182 4.182 18 N -0.546 5.546 19 Si 0.732 3.268 20 H -0.161 1.161 21 H -0.210 1.210 22 H -0.184 1.184 23 S 2.790 3.210 24 O -0.992 6.992 25 O -0.997 6.997 26 N -0.846 5.846 27 C -0.046 4.046 28 C -0.040 4.040 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.064 0.936 40 H 0.245 0.755 41 H 0.110 0.890 42 H 0.142 0.858 43 H 0.085 0.915 44 H 0.118 0.882 45 H 0.064 0.936 46 H 0.085 0.915 47 H 0.087 0.913 48 H 0.063 0.937 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 13.338 6.373 -14.841 20.947 hybrid contribution -1.113 0.325 0.084 1.163 sum 12.225 6.698 -14.757 20.300 Atomic orbital electron populations 1.21836 0.95347 1.01247 1.02166 1.21374 0.95427 1.00611 0.93374 0.88733 1.21557 0.96092 1.00278 0.96796 1.21541 0.94872 1.01396 0.97421 1.21479 1.00848 0.98860 0.94039 1.21875 0.94272 1.01692 0.98402 1.21018 0.94196 0.96197 0.83900 0.92944 1.46041 1.67969 1.14417 1.09048 1.21339 0.77362 0.87808 0.85401 1.90647 1.49290 1.16373 1.85077 1.21789 1.03814 0.93306 0.86631 1.53071 1.31086 1.49282 1.36160 1.18199 0.83758 0.92760 1.48568 0.92165 1.25984 0.94838 1.02222 0.95197 1.69986 1.02115 1.37779 1.44670 0.86382 0.78301 0.81618 0.80462 1.16087 1.21018 1.18404 1.02140 0.72495 0.72878 0.73532 1.93476 1.80481 1.77300 1.47943 1.93451 1.78054 1.40580 1.87635 1.57441 1.40817 1.17936 1.68415 1.21530 0.88484 1.00254 0.94285 1.21428 1.01390 0.78804 1.02357 0.93327 0.90717 0.94490 0.92971 0.89923 0.90833 0.90719 0.93225 0.90730 0.90356 0.93584 0.75451 0.88981 0.85824 0.91529 0.88170 0.93624 0.91521 0.91255 0.93666 0.89784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.03 71.98 0.65 -2.31 16 2 C -0.09 -1.55 2.30 -10.80 -0.02 -1.58 16 3 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 4 C -0.11 -1.61 5.20 30.59 0.16 -1.45 16 5 C -0.11 -1.48 5.92 30.59 0.18 -1.30 16 6 C -0.11 -1.91 5.92 30.59 0.18 -1.73 16 7 C -0.12 -2.56 5.49 30.59 0.17 -2.39 16 8 C 0.15 3.64 1.90 44.99 0.09 3.72 16 9 H 0.05 1.65 7.58 -2.38 -0.02 1.63 16 10 N -0.72 -19.55 4.38 -442.54 -1.94 -21.49 16 11 C 0.50 18.51 7.33 87.66 0.64 19.15 16 12 O -0.54 -23.54 15.70 -3.02 -0.05 -23.58 16 13 C 0.07 3.01 5.13 85.63 0.44 3.45 16 14 N -0.86 -41.90 1.99 -347.17 -0.69 -42.59 16 15 C -0.30 -17.10 9.10 84.03 0.76 -16.33 16 16 H 0.06 3.84 8.06 -2.91 -0.02 3.81 16 17 C 0.02 1.22 5.30 84.86 0.45 1.67 16 18 N -0.91 -53.84 13.97 21.65 0.30 -53.54 16 19 Si 0.91 41.52 25.24 68.60 1.73 43.25 16 20 H -0.24 -9.21 6.67 99.48 0.66 -8.55 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 22 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 23 S 2.78 128.06 6.00 -56.49 -0.34 127.72 16 24 O -1.01 -53.57 16.42 -128.00 -2.10 -55.67 16 25 O -1.01 -45.60 15.93 -128.00 -2.04 -47.64 16 26 N -1.00 -37.63 3.64 -562.65 -2.05 -39.68 16 27 C 0.10 2.91 10.25 127.77 1.31 4.22 16 28 C 0.11 3.64 10.29 127.77 1.31 4.96 16 29 H 0.05 1.06 7.45 -2.39 -0.02 1.04 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.41 8.56 8.39 -92.71 -0.78 7.78 16 41 H 0.09 3.73 3.50 -2.39 -0.01 3.72 16 42 H 0.12 4.26 6.99 -2.39 -0.02 4.24 16 43 H 0.28 15.11 8.31 -92.71 -0.77 14.34 16 44 H 0.10 2.32 7.85 -2.38 -0.02 2.30 16 45 H 0.05 1.37 7.32 -2.39 -0.02 1.35 16 46 H 0.07 1.79 8.04 -2.39 -0.02 1.77 16 47 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 48 H 0.04 1.83 7.75 -2.39 -0.02 1.81 16 49 H 0.08 2.50 8.02 -2.39 -0.02 2.48 16 Total: -1.00 -74.76 394.28 -0.73 -75.50 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 0.12 Total: 27.63 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 6.32 Total: 10.09 kcal Atomic # 7 Polarization: -152.92 SS G_CDS: -4.38 Total: -157.30 kcal Atomic # 8 Polarization: -122.70 SS G_CDS: -4.19 Total: -126.89 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 1.73 Total: 43.25 kcal Atomic # 16 Polarization: 128.06 SS G_CDS: -0.34 Total: 127.72 kcal Total: -74.76 -0.73 -75.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408007396.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.692 kcal (2) G-P(sol) polarization free energy of solvation -74.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds