Wall clock time and date at job start Wed Apr 1 2020 04:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.70149 * 2 1 4 4 C 1.52758 * 109.51304 * 239.87682 * 2 1 3 5 5 C 1.53045 * 109.38469 * 185.70747 * 4 2 1 6 6 C 1.53037 * 109.53850 * 61.23794 * 5 4 2 7 7 C 1.53198 * 109.31307 * 298.63818 * 6 5 4 8 8 H 1.09000 * 109.58358 * 294.84461 * 7 6 5 9 9 C 1.53001 * 109.70196 * 174.49318 * 7 6 5 10 10 N 1.46921 * 108.77388 * 54.63256 * 7 6 5 11 11 C 1.34785 * 120.62729 * 126.36789 * 10 7 6 12 12 O 1.21275 * 120.00188 * 338.32257 * 11 10 7 13 13 C 1.50701 * 119.99625 * 158.31567 * 11 10 7 14 14 N 1.46502 * 109.47152 * 191.68665 * 13 11 10 15 15 C 1.36936 * 119.99667 * 84.99964 * 14 13 11 16 16 H 1.08004 * 119.99510 * 218.11685 * 15 14 13 17 17 C 1.38807 * 120.00044 * 38.12646 * 15 14 13 18 18 N 1.31622 * 120.00098 * 21.66041 * 17 15 14 19 19 Si 1.86805 * 120.00096 * 201.67135 * 17 15 14 20 20 H 1.48501 * 109.46671 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47334 * 119.99169 * 19 17 15 22 22 H 1.48494 * 109.47047 * 239.99866 * 19 17 15 23 23 S 1.65601 * 120.00103 * 265.00911 * 14 13 11 24 24 O 1.42100 * 106.40004 * 197.96041 * 23 14 13 25 25 O 1.42102 * 106.39917 * 330.87484 * 23 14 13 26 26 N 1.65600 * 107.22199 * 84.41506 * 23 14 13 27 27 C 1.46498 * 119.99693 * 83.54024 * 26 23 14 28 28 C 1.46498 * 119.99980 * 263.54201 * 26 23 14 29 29 H 1.08995 * 109.47696 * 308.42751 * 1 2 3 30 30 H 1.09003 * 109.47250 * 68.42655 * 1 2 3 31 31 H 1.08997 * 109.47246 * 188.41936 * 1 2 3 32 32 H 1.08998 * 109.56630 * 65.67618 * 4 2 1 33 33 H 1.08995 * 109.38943 * 305.62953 * 4 2 1 34 34 H 1.09009 * 109.45798 * 301.22293 * 5 4 2 35 35 H 1.09000 * 109.46254 * 181.26408 * 5 4 2 36 36 H 1.08998 * 109.50090 * 178.68682 * 6 5 4 37 37 H 1.08998 * 109.49560 * 58.58497 * 6 5 4 38 38 H 1.09001 * 109.46884 * 303.05049 * 9 7 6 39 39 H 1.09001 * 109.47309 * 63.04850 * 9 7 6 40 40 H 1.09000 * 109.47040 * 183.05495 * 9 7 6 41 41 H 1.08991 * 109.47682 * 311.68911 * 13 11 10 42 42 H 1.09000 * 109.46650 * 71.69187 * 13 11 10 43 43 H 0.97001 * 119.99463 * 180.02562 * 18 17 15 44 44 H 1.09007 * 109.46993 * 89.99615 * 27 26 23 45 45 H 1.08997 * 109.46988 * 209.99955 * 27 26 23 46 46 H 1.09005 * 109.47645 * 330.00177 * 27 26 23 47 47 H 1.08996 * 109.47519 * 359.97438 * 28 26 23 48 48 H 1.09001 * 109.47153 * 120.00303 * 28 26 23 49 49 H 1.09001 * 109.46599 * 239.99603 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7226 -1.2454 5 6 3.5639 -0.8463 -1.1724 6 6 3.9523 -1.6686 0.0584 7 6 3.4643 -0.9517 1.3213 8 1 3.9927 -0.0047 1.4312 9 6 3.7256 -1.8300 2.5466 10 7 2.0225 -0.6994 1.1945 11 6 1.1672 -1.1068 2.1533 12 8 1.4854 -1.9989 2.9106 13 6 -0.1846 -0.4536 2.2842 14 7 -0.8052 -0.8641 3.5461 15 6 -0.5140 -0.1916 4.7029 16 1 -0.4097 -0.7339 5.6311 17 6 -0.3531 1.1869 4.6826 18 7 -0.8772 1.8963 3.7056 19 14 0.6074 2.0354 6.0416 20 1 1.0897 1.0217 7.0138 21 1 1.7688 2.7507 5.4547 22 1 -0.2731 3.0080 6.7371 23 16 -1.8587 -2.1415 3.5737 24 8 -2.5922 -2.0305 4.7857 25 8 -2.4743 -2.1816 2.2936 26 7 -0.9525 -3.5218 3.7002 27 6 -0.4918 -3.9777 5.0140 28 6 -0.6114 -4.2869 2.4983 29 1 -0.3634 0.6387 0.8050 30 1 -0.3634 0.3779 -0.9557 31 1 -0.3633 -1.0166 0.1505 32 1 1.7634 -0.1567 -2.1349 33 1 1.5965 -1.7170 -1.2940 34 1 4.0058 0.1476 -1.0994 35 1 3.9315 -1.3417 -2.0710 36 1 5.0363 -1.7760 0.0970 37 1 3.4904 -2.6540 -0.0019 38 1 3.2358 -2.7945 2.4133 39 1 4.7988 -1.9806 2.6634 40 1 3.3284 -1.3406 3.4358 41 1 -0.0672 0.6299 2.2726 42 1 -0.8179 -0.7594 1.4514 43 1 -0.7644 2.8597 3.6912 44 1 -1.2364 -4.6446 5.4488 45 1 0.4526 -4.5104 4.9032 46 1 -0.3490 -3.1172 5.6678 47 1 -1.0384 -3.7977 1.6229 48 1 0.4725 -4.3366 2.3947 49 1 -1.0149 -5.2959 2.5834 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408008436.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:17 Heat of formation + Delta-G solvation = -65.927165 kcal Electronic energy + Delta-G solvation = -32944.457774 eV Core-core repulsion = 28842.363034 eV Total energy + Delta-G solvation = -4102.094740 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -41.67279 -38.47225 -38.10166 -37.22398 -36.85692 -36.59809 -35.19256 -33.59704 -33.16487 -30.09745 -29.34671 -28.87487 -26.86149 -26.03221 -25.35839 -23.82477 -22.46887 -21.88936 -20.37726 -20.05503 -19.21592 -18.61656 -18.39233 -17.23739 -16.98852 -16.82900 -16.47035 -16.21025 -15.66989 -15.48370 -15.18795 -15.10028 -14.99041 -14.80921 -14.47708 -14.21053 -13.90666 -13.80910 -13.57645 -13.41010 -13.30777 -13.28480 -13.11352 -12.95531 -12.83004 -12.78258 -12.72050 -12.57839 -12.53967 -12.36389 -12.24688 -12.16598 -11.92569 -11.66193 -11.51023 -11.40669 -11.35019 -10.83629 -10.27136 -9.87296 -9.43182 -9.21526 -8.22027 -5.97800 -0.07882 1.39282 1.43672 1.55731 1.81680 2.08033 2.34353 2.48788 2.81462 3.06646 3.65300 3.72716 3.84617 3.93159 3.98081 4.01702 4.18885 4.27503 4.33082 4.41685 4.47962 4.52643 4.59238 4.62627 4.72131 4.77783 4.80132 4.86041 4.89357 4.91303 4.94397 4.96636 5.05245 5.12318 5.17026 5.19401 5.24570 5.26130 5.31440 5.40615 5.47143 5.56892 5.70412 5.85533 5.93493 6.43954 6.65623 7.02714 7.41665 7.50796 8.81168 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009994 B = 0.006279 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.916415 B = 4458.562766 C = 5524.731723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.142 3.858 3 H 0.079 0.921 4 C -0.123 4.123 5 C -0.114 4.114 6 C -0.121 4.121 7 C 0.140 3.860 8 H 0.069 0.931 9 C -0.128 4.128 10 N -0.623 5.623 11 C 0.501 3.499 12 O -0.531 6.531 13 C 0.073 3.927 14 N -0.847 5.847 15 C -0.304 4.304 16 H 0.073 0.927 17 C 0.003 3.997 18 N -0.888 5.888 19 Si 0.964 3.036 20 H -0.270 1.270 21 H -0.274 1.274 22 H -0.279 1.279 23 S 2.760 3.240 24 O -1.022 7.022 25 O -1.030 7.030 26 N -1.003 6.003 27 C 0.109 3.891 28 C 0.098 3.902 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.032 0.968 41 H 0.126 0.874 42 H 0.119 0.881 43 H 0.270 0.730 44 H 0.060 0.940 45 H 0.086 0.914 46 H 0.047 0.953 47 H 0.065 0.935 48 H 0.063 0.937 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.252 -5.421 -11.175 16.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.039 3.961 3 H 0.096 0.904 4 C -0.161 4.161 5 C -0.152 4.152 6 C -0.160 4.160 7 C 0.038 3.962 8 H 0.087 0.913 9 C -0.185 4.185 10 N -0.361 5.361 11 C 0.288 3.712 12 O -0.408 6.408 13 C -0.056 4.056 14 N -0.679 5.679 15 C -0.438 4.438 16 H 0.090 0.910 17 C -0.201 4.201 18 N -0.528 5.528 19 Si 0.789 3.211 20 H -0.194 1.194 21 H -0.199 1.199 22 H -0.205 1.205 23 S 2.774 3.226 24 O -1.006 7.006 25 O -1.014 7.014 26 N -0.844 5.844 27 C -0.036 4.036 28 C -0.047 4.047 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.075 0.925 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.143 0.857 42 H 0.136 0.864 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.104 0.896 46 H 0.066 0.934 47 H 0.084 0.916 48 H 0.082 0.918 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.386 -5.787 -10.862 16.104 hybrid contribution 0.507 0.700 1.012 1.331 sum 10.893 -5.087 -9.850 15.542 Atomic orbital electron populations 1.23251 0.95035 1.02323 1.05030 1.21192 0.94006 0.96232 0.84660 0.90354 1.21889 0.96645 1.00980 0.96628 1.21514 0.94996 1.00787 0.97886 1.21935 1.01639 0.98807 0.93590 1.21326 0.79908 0.98460 0.96522 0.91267 1.21997 0.99851 1.00453 0.96215 1.48373 1.06886 1.59875 1.20973 1.21724 0.87669 0.82204 0.79582 1.90592 1.76821 1.28670 1.44688 1.23278 0.91734 1.03934 0.86669 1.52852 1.56755 1.45806 1.12512 1.19024 1.47355 0.90107 0.87274 0.90957 1.25949 0.97679 0.96694 0.99765 1.70018 1.41280 1.06925 1.34538 0.85320 0.78486 0.78271 0.79016 1.19429 1.19903 1.20459 1.02789 0.74194 0.73985 0.71592 1.93417 1.71211 1.86868 1.49100 1.93396 1.76163 1.87711 1.44107 1.57400 1.71631 1.41887 1.13478 1.21315 1.00464 0.99790 0.82060 1.21473 1.01370 0.96471 0.85417 0.90504 0.88582 0.92523 0.88508 0.92287 0.91087 0.89879 0.89340 0.92553 0.92054 0.91993 0.94847 0.85700 0.86385 0.92022 0.92139 0.89561 0.93446 0.91632 0.91831 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.76 7.07 71.98 0.51 -5.25 16 2 C 0.14 3.63 3.44 44.83 0.15 3.78 16 3 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 4 C -0.12 -2.30 5.34 30.53 0.16 -2.14 16 5 C -0.11 -1.82 5.89 30.62 0.18 -1.64 16 6 C -0.12 -2.36 5.38 30.67 0.16 -2.20 16 7 C 0.14 3.74 3.49 44.98 0.16 3.90 16 8 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 9 C -0.13 -3.84 7.64 71.98 0.55 -3.29 16 10 N -0.62 -19.69 2.98 -772.13 -2.30 -21.99 16 11 C 0.50 20.00 6.86 87.66 0.60 20.60 16 12 O -0.53 -22.45 11.08 -3.01 -0.03 -22.48 16 13 C 0.07 3.27 3.40 85.63 0.29 3.56 16 14 N -0.85 -43.07 2.39 -347.18 -0.83 -43.90 16 15 C -0.30 -16.64 8.78 84.03 0.74 -15.90 16 16 H 0.07 4.06 7.86 -2.91 -0.02 4.03 16 17 C 0.00 0.16 4.99 84.86 0.42 0.59 16 18 N -0.89 -47.26 11.46 21.65 0.25 -47.02 16 19 Si 0.96 42.62 29.61 68.60 2.03 44.65 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 22 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 23 S 2.76 136.02 5.99 -56.49 -0.34 135.68 16 24 O -1.02 -56.93 16.58 -128.00 -2.12 -59.05 16 25 O -1.03 -51.64 15.21 -128.00 -1.95 -53.59 16 26 N -1.00 -39.81 3.21 -562.69 -1.81 -41.62 16 27 C 0.11 3.84 10.34 127.77 1.32 5.16 16 28 C 0.10 3.20 10.32 127.77 1.32 4.52 16 29 H 0.08 2.73 4.54 -2.39 -0.01 2.71 16 30 H 0.10 2.14 8.13 -2.39 -0.02 2.12 16 31 H 0.06 1.80 6.04 -2.39 -0.01 1.79 16 32 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.07 1.04 8.14 -2.38 -0.02 1.03 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.06 2.01 6.76 -2.39 -0.02 1.99 16 39 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.03 1.24 6.81 -2.39 -0.02 1.22 16 41 H 0.13 5.98 4.11 -2.39 -0.01 5.97 16 42 H 0.12 5.09 3.23 -2.39 -0.01 5.08 16 43 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 44 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 45 H 0.09 2.57 8.07 -2.39 -0.02 2.55 16 46 H 0.05 1.87 7.89 -2.38 -0.02 1.85 16 47 H 0.06 2.25 6.75 -2.39 -0.02 2.23 16 48 H 0.06 1.99 7.68 -2.39 -0.02 1.97 16 49 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -69.24 378.52 0.42 -68.82 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: 0.95 Total: 28.82 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 6.57 Total: 11.68 kcal Atomic # 7 Polarization: -149.83 SS G_CDS: -4.69 Total: -154.52 kcal Atomic # 8 Polarization: -131.02 SS G_CDS: -4.10 Total: -135.12 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: 136.02 SS G_CDS: -0.34 Total: 135.68 kcal Total: -69.24 0.42 -68.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408008436.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.891 kcal (2) G-P(sol) polarization free energy of solvation -69.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds