Wall clock time and date at job start Wed Apr 1 2020 05:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46617 * 2 1 4 4 C 1.50695 * 109.47476 * 120.00333 * 2 1 3 5 5 O 1.21280 * 120.00061 * 119.99663 * 4 2 1 6 6 N 1.34777 * 119.99513 * 300.00212 * 4 2 1 7 7 C 1.46494 * 120.00451 * 359.97438 * 6 4 2 8 8 C 1.46506 * 119.99488 * 180.02562 * 6 4 2 9 9 C 1.50693 * 109.47381 * 89.99713 * 8 6 4 10 10 H 1.07996 * 120.00375 * 0.02562 * 9 8 6 11 11 C 1.37879 * 120.00110 * 179.97438 * 9 8 6 12 12 N 1.31512 * 119.99947 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00283 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47083 * 89.99870 * 13 11 9 15 15 H 1.48492 * 109.47066 * 210.00355 * 13 11 9 16 16 H 1.48500 * 109.46867 * 330.00288 * 13 11 9 17 17 N 1.46899 * 109.47133 * 240.00576 * 2 1 3 18 18 C 1.46262 * 111.00216 * 71.71620 * 17 2 1 19 19 C 1.47543 * 114.37664 * 148.55756 * 18 17 2 20 20 C 1.54945 * 109.73395 * 62.21761 * 19 18 17 21 21 N 1.44674 * 109.52534 * 290.52646 * 20 19 18 22 22 S 1.65602 * 118.54594 * 269.05599 * 21 20 19 23 23 C 1.81399 * 104.45046 * 89.99990 * 22 21 20 24 24 O 1.42101 * 104.27482 * 206.07140 * 22 21 20 25 25 O 1.42097 * 104.27730 * 333.92843 * 22 21 20 26 26 C 1.47777 * 122.90762 * 89.07549 * 21 20 19 27 27 C 1.44771 * 110.99772 * 308.22865 * 17 2 1 28 28 H 1.09003 * 109.47293 * 187.57085 * 1 2 3 29 29 H 1.09004 * 109.47235 * 307.57227 * 1 2 3 30 30 H 1.09000 * 109.47522 * 67.57508 * 1 2 3 31 31 H 1.09003 * 109.47221 * 90.00137 * 7 6 4 32 32 H 1.09007 * 109.47214 * 210.00386 * 7 6 4 33 33 H 1.08996 * 109.46967 * 330.00058 * 7 6 4 34 34 H 1.09007 * 109.46975 * 209.99907 * 8 6 4 35 35 H 1.09000 * 109.46941 * 329.99217 * 8 6 4 36 36 H 0.97004 * 120.00286 * 180.02562 * 12 11 9 37 37 H 1.08995 * 108.50104 * 27.28731 * 18 17 2 38 38 H 1.09005 * 108.50173 * 269.81979 * 18 17 2 39 39 H 1.09004 * 109.42588 * 182.29827 * 19 18 17 40 40 H 1.09002 * 109.42484 * 302.19402 * 19 18 17 41 41 H 1.09000 * 109.46522 * 50.54510 * 20 19 18 42 42 H 1.09004 * 109.46364 * 170.51992 * 20 19 18 43 43 H 1.09010 * 109.47029 * 59.99500 * 23 22 21 44 44 H 1.08999 * 109.47498 * 179.97438 * 23 22 21 45 45 H 1.09000 * 109.47034 * 299.99985 * 23 22 21 46 46 H 1.09009 * 109.05974 * 78.64281 * 26 21 20 47 47 H 1.09000 * 109.06810 * 197.57437 * 26 21 20 48 48 H 1.08998 * 109.43470 * 97.79256 * 27 17 2 49 49 H 1.08999 * 109.39731 * 337.90250 * 27 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1190 6 7 1.7068 -0.2500 2.4545 7 6 0.8649 0.9413 2.5890 8 6 2.1957 -0.9404 3.6506 9 6 3.5230 -0.3563 4.0605 10 1 3.9587 0.4488 3.4876 11 6 4.1807 -0.8492 5.1675 12 7 3.6500 -1.8294 5.8654 13 14 5.8264 -0.1258 5.6752 14 1 5.6027 0.9998 6.6175 15 1 6.6435 -1.1727 6.3396 16 1 6.5412 0.3706 4.4719 17 7 2.0197 -0.6924 -1.1995 18 6 1.7905 0.1121 -2.3993 19 6 2.8010 -0.0726 -3.4584 20 6 2.7826 -1.5423 -3.9487 21 7 3.2969 -2.4057 -2.9080 22 16 4.9193 -2.7366 -2.8842 23 6 5.6332 -1.4279 -1.8506 24 8 5.0108 -3.9946 -2.2297 25 8 5.3282 -2.5829 -4.2364 26 6 2.4384 -3.0056 -1.8654 27 6 1.4041 -1.9958 -1.3338 28 1 -0.3634 -1.0187 0.1354 29 1 -0.3634 0.6266 0.8145 30 1 -0.3634 0.3920 -0.9499 31 1 -0.1832 0.6438 2.6222 32 1 1.1229 1.4666 3.5087 33 1 1.0288 1.6001 1.7362 34 1 1.4777 -0.8153 4.4613 35 1 2.3171 -2.0016 3.4335 36 1 4.1125 -2.1760 6.6445 37 1 1.7773 1.1637 -2.1133 38 1 0.8123 -0.1444 -2.8062 39 1 2.5764 0.5910 -4.2935 40 1 3.7886 0.1643 -3.0625 41 1 1.7596 -1.8323 -4.1886 42 1 3.4049 -1.6362 -4.8387 43 1 5.1941 -1.4721 -0.8538 44 1 6.7116 -1.5692 -1.7789 45 1 5.4226 -0.4564 -2.2977 46 1 1.9143 -3.8638 -2.2863 47 1 3.0644 -3.3426 -1.0391 48 1 0.5681 -1.9320 -2.0303 49 1 1.0410 -2.3266 -0.3607 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408089402.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:50 Heat of formation + Delta-G solvation = -99.861645 kcal Electronic energy + Delta-G solvation = -31466.896323 eV Core-core repulsion = 27363.330074 eV Total energy + Delta-G solvation = -4103.566249 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.36579 -39.51045 -38.25564 -37.08237 -36.63477 -36.42970 -34.73930 -33.74603 -31.99619 -30.27421 -29.53646 -28.11948 -27.43373 -26.73315 -25.73225 -23.98453 -22.47463 -21.22827 -19.99761 -19.53610 -18.67450 -18.60785 -17.96069 -17.48603 -17.31078 -17.13506 -16.61155 -16.34563 -16.17751 -15.66108 -15.43249 -14.92879 -14.61114 -14.46922 -14.34488 -14.20392 -14.17416 -13.96361 -13.92390 -13.63781 -13.44002 -13.27541 -13.20344 -13.16467 -13.14445 -12.92539 -12.84210 -12.58274 -12.37083 -12.32504 -12.26570 -12.12382 -12.02932 -11.89852 -11.67635 -11.54936 -11.46639 -10.63038 -10.30784 -9.78962 -9.33280 -9.10290 -8.20844 -6.35207 -0.63851 1.35307 1.38564 1.48129 1.68469 1.97886 2.29783 2.43196 2.88513 3.03240 3.08767 3.20776 3.70550 3.80066 3.95572 4.02488 4.10934 4.13418 4.16244 4.19804 4.23579 4.45251 4.56340 4.63142 4.67862 4.69457 4.74721 4.81974 4.85937 4.88776 4.92064 4.96361 4.99396 5.05867 5.07599 5.12900 5.27236 5.28124 5.37794 5.45470 5.59320 5.84479 5.90080 6.09250 6.16248 6.37226 6.73965 6.91269 7.31789 7.62610 8.85579 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011696 B = 0.003955 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.385031 B = 7078.225092 C = 8544.140784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.080 3.920 3 H 0.120 0.880 4 C 0.498 3.502 5 O -0.574 6.574 6 N -0.612 5.612 7 C 0.078 3.922 8 C 0.263 3.737 9 C -0.537 4.537 10 H 0.052 0.948 11 C 0.008 3.992 12 N -0.929 5.929 13 Si 0.963 3.037 14 H -0.263 1.263 15 H -0.284 1.284 16 H -0.273 1.273 17 N -0.530 5.530 18 C 0.059 3.941 19 C -0.143 4.143 20 C 0.108 3.892 21 N -0.974 5.974 22 S 2.616 3.384 23 C -0.655 4.655 24 O -1.004 7.004 25 O -0.983 6.983 26 C 0.136 3.864 27 C 0.064 3.936 28 H 0.049 0.951 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.019 0.981 35 H -0.004 1.004 36 H 0.266 0.734 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.114 0.886 40 H 0.060 0.940 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.117 0.883 44 H 0.133 0.867 45 H 0.148 0.852 46 H 0.076 0.924 47 H 0.057 0.943 48 H 0.070 0.930 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.556 9.403 -20.559 24.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.032 4.032 3 H 0.138 0.862 4 C 0.286 3.714 5 O -0.453 6.453 6 N -0.344 5.344 7 C -0.064 4.064 8 C 0.142 3.858 9 C -0.576 4.576 10 H 0.071 0.929 11 C -0.191 4.191 12 N -0.569 5.569 13 Si 0.788 3.212 14 H -0.188 1.188 15 H -0.209 1.209 16 H -0.198 1.198 17 N -0.254 5.254 18 C -0.068 4.068 19 C -0.182 4.182 20 C -0.017 4.017 21 N -0.811 5.811 22 S 2.711 3.289 23 C -0.807 4.807 24 O -0.995 6.995 25 O -0.974 6.974 26 C 0.010 3.990 27 C -0.066 4.066 28 H 0.068 0.932 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.037 0.963 35 H 0.015 0.985 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.132 0.868 40 H 0.079 0.921 41 H 0.116 0.884 42 H 0.111 0.889 43 H 0.136 0.864 44 H 0.151 0.849 45 H 0.167 0.833 46 H 0.094 0.906 47 H 0.076 0.924 48 H 0.088 0.912 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.291 7.988 -20.861 23.498 hybrid contribution 0.259 0.396 1.569 1.638 sum -7.032 8.384 -19.293 22.180 Atomic orbital electron populations 1.22612 0.93041 1.03130 1.05177 1.21676 0.95688 0.98242 0.87580 0.86193 1.21248 0.80202 0.84853 0.85146 1.90634 1.39197 1.28675 1.86758 1.48121 1.50590 1.29562 1.06164 1.22051 0.94158 0.86667 1.03497 1.18660 0.93396 0.91688 0.82101 1.21695 1.05926 1.18822 1.11123 0.92937 1.25816 1.01588 0.95270 0.96415 1.70047 1.40711 1.27303 1.18840 0.85483 0.79085 0.78303 0.78352 1.18797 1.20946 1.19808 1.60508 1.59944 1.02944 1.02008 1.21068 0.98657 0.97736 0.89329 1.21651 1.00358 0.97105 0.99092 1.21641 1.02334 0.88903 0.88822 1.56755 1.24168 1.62450 1.37737 1.04412 0.74251 0.75787 0.74408 1.30427 1.13429 1.20067 1.16735 1.93547 1.86238 1.41440 1.78280 1.93519 1.82209 1.87926 1.33734 1.21656 0.93663 0.94823 0.88818 1.22169 0.94825 0.89410 1.00233 0.93233 0.89416 0.88966 0.91032 0.92111 0.88750 0.96320 0.98540 0.92545 0.90051 0.92386 0.86827 0.92125 0.88400 0.88930 0.86379 0.84883 0.83350 0.90587 0.92396 0.91161 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.00 8.11 71.98 0.58 -2.42 16 2 C 0.08 1.87 1.81 44.17 0.08 1.95 16 3 H 0.12 2.38 6.96 -2.39 -0.02 2.36 16 4 C 0.50 18.78 6.45 87.66 0.57 19.34 16 5 O -0.57 -27.40 14.65 -3.03 -0.04 -27.45 16 6 N -0.61 -24.23 2.86 -851.14 -2.43 -26.66 16 7 C 0.08 2.10 8.79 127.77 1.12 3.22 16 8 C 0.26 13.88 5.16 85.63 0.44 14.32 16 9 C -0.54 -30.50 9.39 25.60 0.24 -30.26 16 10 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 11 C 0.01 0.46 5.46 84.66 0.46 0.92 16 12 N -0.93 -56.29 13.29 21.45 0.28 -56.00 16 13 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 14 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 15 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 16 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 17 N -0.53 -11.65 3.82 -891.02 -3.41 -15.06 16 18 C 0.06 0.78 4.14 84.72 0.35 1.13 16 19 C -0.14 -1.74 6.02 29.55 0.18 -1.56 16 20 C 0.11 1.69 5.65 87.39 0.49 2.18 16 21 N -0.97 -22.39 2.76 -511.44 -1.41 -23.80 16 22 S 2.62 71.68 5.95 -56.49 -0.34 71.34 16 23 C -0.65 -15.74 10.89 113.37 1.24 -14.50 16 24 O -1.00 -36.90 16.70 -127.65 -2.13 -39.04 16 25 O -0.98 -28.65 16.39 -127.65 -2.09 -30.74 16 26 C 0.14 3.58 6.25 86.48 0.54 4.12 16 27 C 0.06 1.47 3.54 87.05 0.31 1.78 16 28 H 0.05 0.98 6.76 -2.39 -0.02 0.97 16 29 H 0.09 1.29 4.78 -2.39 -0.01 1.28 16 30 H 0.09 1.00 7.21 -2.39 -0.02 0.98 16 31 H 0.07 1.56 7.12 -2.39 -0.02 1.54 16 32 H 0.06 1.78 8.07 -2.38 -0.02 1.76 16 33 H 0.09 1.81 5.92 -2.39 -0.01 1.79 16 34 H 0.02 1.01 8.07 -2.38 -0.02 0.99 16 35 H 0.00 -0.22 7.42 -2.39 -0.02 -0.23 16 36 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 37 H 0.08 0.85 7.41 -2.39 -0.02 0.84 16 38 H 0.06 0.57 6.92 -2.38 -0.02 0.55 16 39 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.06 0.87 6.22 -2.39 -0.01 0.85 16 41 H 0.10 1.16 8.10 -2.39 -0.02 1.14 16 42 H 0.09 1.48 6.70 -2.39 -0.02 1.46 16 43 H 0.12 3.58 8.14 -2.38 -0.02 3.56 16 44 H 0.13 2.76 8.14 -2.39 -0.02 2.75 16 45 H 0.15 2.76 6.34 -2.39 -0.02 2.74 16 46 H 0.08 1.75 8.14 -2.38 -0.02 1.74 16 47 H 0.06 2.00 7.22 -2.39 -0.02 1.98 16 48 H 0.07 1.17 7.14 -2.39 -0.02 1.15 16 49 H 0.06 1.67 5.46 -2.39 -0.01 1.66 16 Total: -1.00 -83.41 381.47 -1.99 -85.40 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.95 Total: 14.86 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 6.60 Total: 0.21 kcal Atomic # 7 Polarization: -114.56 SS G_CDS: -6.97 Total: -121.52 kcal Atomic # 8 Polarization: -92.96 SS G_CDS: -4.27 Total: -97.23 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: 71.68 SS G_CDS: -0.34 Total: 71.34 kcal Total: -83.41 -1.99 -85.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408089402.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.458 kcal (2) G-P(sol) polarization free energy of solvation -83.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds