Wall clock time and date at job start Wed Apr 1 2020 04:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47121 * 2 1 4 4 N 1.46500 * 109.46824 * 180.02562 * 3 2 1 5 5 C 1.45649 * 117.70983 * 89.99992 * 4 3 2 6 6 C 1.52986 * 110.77672 * 158.11744 * 5 4 3 7 7 N 1.47274 * 108.18285 * 46.72721 * 6 5 4 8 8 S 1.65599 * 121.35099 * 118.47672 * 7 6 5 9 9 O 1.42104 * 106.40282 * 210.07779 * 8 7 6 10 10 O 1.42097 * 106.40587 * 342.99916 * 8 7 6 11 11 N 1.65608 * 107.21934 * 96.54057 * 8 7 6 12 12 C 1.46491 * 120.00086 * 97.95068 * 11 8 7 13 13 C 1.46494 * 119.99552 * 277.94846 * 11 8 7 14 14 C 1.50709 * 109.47264 * 94.40936 * 13 11 8 15 15 H 1.08004 * 119.99626 * 0.02562 * 14 13 11 16 16 C 1.37870 * 120.00368 * 179.97438 * 14 13 11 17 17 N 1.31512 * 119.99914 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00170 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47042 * 89.99984 * 18 16 14 20 20 H 1.48502 * 109.47544 * 210.00478 * 18 16 14 21 21 H 1.48505 * 109.47002 * 330.00587 * 18 16 14 22 22 C 1.47050 * 117.29567 * 298.49094 * 7 6 5 23 23 C 1.52999 * 109.56791 * 162.56266 * 22 7 6 24 24 C 1.53002 * 109.56855 * 282.92415 * 22 7 6 25 25 C 1.33383 * 117.70216 * 270.01588 * 4 3 2 26 26 O 1.21278 * 118.49148 * 4.30014 * 25 4 3 27 27 H 1.09000 * 109.46602 * 60.00011 * 1 2 3 28 28 H 1.09001 * 109.47379 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47192 * 300.00037 * 1 2 3 30 30 H 1.08997 * 109.46856 * 239.99293 * 2 1 3 31 31 H 1.09000 * 109.46602 * 119.99989 * 2 1 3 32 32 H 1.08992 * 109.47373 * 59.99917 * 3 2 1 33 33 H 1.09000 * 109.47374 * 299.99517 * 3 2 1 34 34 H 1.08998 * 109.21273 * 37.78207 * 5 4 3 35 35 H 1.08997 * 109.18124 * 278.43293 * 5 4 3 36 36 H 1.08992 * 109.72184 * 287.05743 * 6 5 4 37 37 H 1.08996 * 109.72212 * 166.39577 * 6 5 4 38 38 H 1.09003 * 109.46970 * 90.00529 * 12 11 8 39 39 H 1.09000 * 109.46915 * 209.99531 * 12 11 8 40 40 H 1.08993 * 109.47253 * 329.99962 * 12 11 8 41 41 H 1.09003 * 109.47391 * 214.40706 * 13 11 8 42 42 H 1.09001 * 109.47768 * 334.41326 * 13 11 8 43 43 H 0.97006 * 119.99991 * 179.97438 * 17 16 14 44 44 H 1.08996 * 109.46812 * 60.76511 * 23 22 7 45 45 H 1.09003 * 109.46924 * 180.75971 * 23 22 7 46 46 H 1.08995 * 109.46938 * 300.76548 * 23 22 7 47 47 H 1.08994 * 109.47133 * 59.99690 * 24 22 7 48 48 H 1.08996 * 109.46707 * 179.97438 * 24 22 7 49 49 H 1.09003 * 109.46640 * 299.99409 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1817 1.4425 -1.2904 6 6 5.6092 1.9756 -1.1541 7 7 6.2372 1.3169 0.0038 8 16 7.5829 0.3677 -0.1700 9 8 7.5158 -0.6151 0.8542 10 8 7.6713 0.0459 -1.5512 11 7 8.8979 1.3134 0.1749 12 6 9.5074 1.2630 1.5060 13 6 9.4515 2.2003 -0.8512 14 6 8.8571 3.5769 -0.6993 15 1 8.1390 3.7716 0.0836 16 6 9.2307 4.5879 -1.5591 17 7 10.1054 4.3509 -2.5121 18 14 8.4944 6.2942 -1.3704 19 1 9.3400 7.0995 -0.4530 20 1 8.4341 6.9570 -2.6979 21 1 7.1236 6.1827 -0.8101 22 6 5.6205 1.5362 1.3206 23 6 6.1114 0.4688 2.3006 24 6 5.9997 2.9248 1.8393 25 6 4.1256 1.4418 1.1801 26 8 3.4539 1.3615 2.1866 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6768 1.9563 -0.8900 34 1 3.6281 2.0733 -1.9858 35 1 4.2144 0.4243 -1.6778 36 1 5.5858 3.0537 -0.9959 37 1 6.1746 1.7480 -2.0578 38 1 10.2829 0.4972 1.5218 39 1 9.9487 2.2318 1.7404 40 1 8.7443 1.0227 2.2462 41 1 10.5340 2.2574 -0.7366 42 1 9.2109 1.8078 -1.8392 43 1 10.3679 5.0621 -3.1173 44 1 7.1941 0.5405 2.4035 45 1 5.6430 0.6247 3.2724 46 1 5.8469 -0.5193 1.9240 47 1 5.6439 3.6829 1.1416 48 1 5.5414 3.0858 2.8150 49 1 7.0836 2.9950 1.9305 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408366003.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:12 Heat of formation + Delta-G solvation = -90.234238 kcal Electronic energy + Delta-G solvation = -32259.930195 eV Core-core repulsion = 28156.781421 eV Total energy + Delta-G solvation = -4103.148773 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.74104 -37.27399 -36.78725 -36.24259 -35.55542 -35.32843 -33.42138 -32.56304 -31.50072 -28.47962 -27.90337 -27.15912 -26.62828 -25.13082 -23.56139 -22.74745 -22.30777 -21.44169 -19.32424 -17.87801 -17.60474 -16.91054 -16.80665 -16.51587 -15.95802 -15.57870 -15.37390 -15.02533 -14.67823 -14.46868 -14.18174 -13.70617 -13.63581 -13.40784 -13.31034 -13.08142 -12.57892 -12.52291 -12.40496 -12.31121 -12.19317 -12.08672 -12.01413 -11.93334 -11.63341 -11.50626 -11.38451 -11.33449 -11.23747 -11.19324 -11.14514 -10.74902 -10.70703 -10.57432 -10.28307 -10.10915 -9.82310 -9.75979 -8.87332 -8.66393 -8.56805 -8.09432 -6.18309 -4.25346 1.12812 2.66895 2.88252 3.18366 3.25971 3.27054 3.33985 4.01338 4.29120 4.41416 4.68777 4.72486 4.84480 4.88595 5.01589 5.10631 5.14634 5.16525 5.22274 5.30342 5.32064 5.46021 5.51253 5.55225 5.63745 5.82606 5.84660 5.88029 5.90460 5.95293 6.00013 6.03446 6.06776 6.11863 6.16528 6.25923 6.39805 6.45030 6.48790 6.66027 6.71548 7.26843 7.35705 7.43793 7.54742 7.79004 8.07485 8.18648 8.80620 9.41286 10.89517 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012259 B = 0.004786 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.436709 B = 5849.385503 C = 6752.157830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.107 3.893 4 N -0.600 5.600 5 C 0.099 3.901 6 C 0.111 3.889 7 N -0.998 5.998 8 S 2.786 3.214 9 O -0.990 6.990 10 O -0.978 6.978 11 N -0.994 5.994 12 C 0.099 3.901 13 C 0.245 3.755 14 C -0.540 4.540 15 H 0.066 0.934 16 C 0.066 3.934 17 N -0.889 5.889 18 Si 0.891 3.109 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C 0.174 3.826 23 C -0.158 4.158 24 C -0.152 4.152 25 C 0.528 3.472 26 O -0.545 6.545 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.117 0.883 38 H 0.045 0.955 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.038 0.962 42 H 0.047 0.953 43 H 0.265 0.735 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.064 0.936 48 H 0.070 0.930 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.332 -4.594 4.366 13.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C -0.016 4.016 4 N -0.331 5.331 5 C -0.026 4.026 6 C -0.015 4.015 7 N -0.836 5.836 8 S 2.796 3.204 9 O -0.974 6.974 10 O -0.962 6.962 11 N -0.837 5.837 12 C -0.047 4.047 13 C 0.123 3.877 14 C -0.579 4.579 15 H 0.084 0.916 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.198 1.198 22 C 0.083 3.917 23 C -0.216 4.216 24 C -0.210 4.210 25 C 0.314 3.686 26 O -0.422 6.422 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.135 0.865 38 H 0.063 0.937 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.104 0.896 45 H 0.092 0.908 46 H 0.104 0.896 47 H 0.083 0.917 48 H 0.089 0.911 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.494 -5.474 4.450 14.348 hybrid contribution -0.252 1.630 -0.101 1.652 sum -12.747 -3.845 4.349 14.006 Atomic orbital electron populations 1.21677 0.95224 1.01797 1.01788 1.21855 0.96043 0.97259 1.02654 1.21624 0.79548 0.97260 1.03151 1.47258 1.06934 1.72762 1.06186 1.21889 0.94111 1.02214 0.84369 1.21717 0.91494 0.98562 0.89702 1.58562 1.45695 1.67481 1.11862 1.01861 0.72140 0.73518 0.72875 1.93649 1.86603 1.58709 1.58459 1.93554 1.86071 1.82807 1.33801 1.57634 1.45250 1.60250 1.20526 1.21395 0.97814 1.02407 0.83090 1.19208 0.95514 0.87694 0.85280 1.21589 1.26009 0.94715 1.15589 0.91592 1.24938 0.94976 0.98826 0.95010 1.69934 1.31764 1.33330 1.17664 0.86617 0.79608 0.84379 0.77493 1.20657 1.21171 1.19799 1.20442 0.88718 0.98648 0.83888 1.22632 1.02871 0.97839 0.98232 1.22145 1.03663 0.93937 1.01299 1.20185 0.90324 0.75270 0.82811 1.90668 1.65685 1.50193 1.35693 0.92727 0.92596 0.92547 0.91935 0.91400 0.89730 0.90620 0.89465 0.91353 0.89691 0.86489 0.93665 0.90692 0.92215 0.94391 0.93475 0.92565 0.89602 0.90843 0.89643 0.91670 0.91136 0.89958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.14 -1.46 6.25 -26.73 -0.17 -1.63 16 3 C 0.11 1.19 5.16 -4.04 -0.02 1.16 16 4 N -0.60 -8.00 2.81 -174.89 -0.49 -8.49 16 5 C 0.10 1.19 6.57 -4.51 -0.03 1.16 16 6 C 0.11 1.66 6.41 -3.63 -0.02 1.63 16 7 N -1.00 -16.49 2.99 -100.90 -0.30 -16.79 16 8 S 2.79 52.81 5.84 -107.50 -0.63 52.18 16 9 O -0.99 -18.82 12.08 -57.17 -0.69 -19.51 16 10 O -0.98 -21.18 15.45 -57.17 -0.88 -22.07 16 11 N -0.99 -19.37 3.22 -123.06 -0.40 -19.77 16 12 C 0.10 1.61 10.34 59.84 0.62 2.23 16 13 C 0.25 5.70 5.42 -5.19 -0.03 5.67 16 14 C -0.54 -12.99 9.39 -34.44 -0.32 -13.31 16 15 H 0.07 1.51 7.29 -52.48 -0.38 1.13 16 16 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -24.10 13.29 55.43 0.74 -23.36 16 18 Si 0.89 19.56 29.54 -169.99 -5.02 14.54 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 22 C 0.17 2.73 1.01 -132.79 -0.13 2.59 16 23 C -0.16 -2.46 6.61 37.16 0.25 -2.21 16 24 C -0.15 -2.25 8.66 37.16 0.32 -1.93 16 25 C 0.53 8.29 6.34 -11.73 -0.07 8.21 16 26 O -0.55 -9.56 15.63 5.56 0.09 -9.47 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.03 7.23 -51.93 -0.38 0.66 16 33 H 0.08 0.66 7.80 -51.93 -0.41 0.26 16 34 H 0.09 0.80 7.84 -51.93 -0.41 0.40 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 1.26 7.51 -51.93 -0.39 0.87 16 37 H 0.12 1.85 6.95 -51.93 -0.36 1.48 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 40 H 0.06 0.86 5.07 -51.93 -0.26 0.60 16 41 H 0.04 0.94 8.11 -51.93 -0.42 0.52 16 42 H 0.05 1.21 7.05 -51.93 -0.37 0.84 16 43 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 44 H 0.09 1.32 3.72 -51.93 -0.19 1.13 16 45 H 0.07 1.06 7.87 -51.93 -0.41 0.65 16 46 H 0.08 1.44 6.73 -51.93 -0.35 1.09 16 47 H 0.06 0.99 7.50 -51.93 -0.39 0.60 16 48 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.08 1.25 7.63 -51.93 -0.40 0.85 16 LS Contribution 389.51 15.07 5.87 5.87 Total: -1.00 -30.39 389.51 -9.11 -39.49 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -8.04 Total: 3.06 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 0.66 Total: 4.31 kcal Atomic # 7 Polarization: -67.95 SS G_CDS: -0.45 Total: -68.41 kcal Atomic # 8 Polarization: -49.56 SS G_CDS: -1.49 Total: -51.04 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Atomic # 16 Polarization: 52.81 SS G_CDS: -0.63 Total: 52.18 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.39 -9.11 -39.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408366003.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.739 kcal (2) G-P(sol) polarization free energy of solvation -30.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds