Wall clock time and date at job start Wed Apr 1 2020 04:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47121 * 2 1 4 4 N 1.46500 * 109.46824 * 180.02562 * 3 2 1 5 5 C 1.45649 * 117.70983 * 89.99992 * 4 3 2 6 6 C 1.52986 * 110.77672 * 158.11744 * 5 4 3 7 7 N 1.47274 * 108.18285 * 46.72721 * 6 5 4 8 8 S 1.65599 * 121.35099 * 118.47672 * 7 6 5 9 9 O 1.42104 * 106.40282 * 210.07779 * 8 7 6 10 10 O 1.42097 * 106.40587 * 342.99916 * 8 7 6 11 11 N 1.65608 * 107.21934 * 96.54057 * 8 7 6 12 12 C 1.46491 * 120.00086 * 97.95068 * 11 8 7 13 13 C 1.46494 * 119.99552 * 277.94846 * 11 8 7 14 14 C 1.50709 * 109.47264 * 94.40936 * 13 11 8 15 15 H 1.08004 * 119.99626 * 0.02562 * 14 13 11 16 16 C 1.37870 * 120.00368 * 179.97438 * 14 13 11 17 17 N 1.31512 * 119.99914 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00170 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47042 * 89.99984 * 18 16 14 20 20 H 1.48502 * 109.47544 * 210.00478 * 18 16 14 21 21 H 1.48505 * 109.47002 * 330.00587 * 18 16 14 22 22 C 1.47050 * 117.29567 * 298.49094 * 7 6 5 23 23 C 1.52999 * 109.56791 * 162.56266 * 22 7 6 24 24 C 1.53002 * 109.56855 * 282.92415 * 22 7 6 25 25 C 1.33383 * 117.70216 * 270.01588 * 4 3 2 26 26 O 1.21278 * 118.49148 * 4.30014 * 25 4 3 27 27 H 1.09000 * 109.46602 * 60.00011 * 1 2 3 28 28 H 1.09001 * 109.47379 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47192 * 300.00037 * 1 2 3 30 30 H 1.08997 * 109.46856 * 239.99293 * 2 1 3 31 31 H 1.09000 * 109.46602 * 119.99989 * 2 1 3 32 32 H 1.08992 * 109.47373 * 59.99917 * 3 2 1 33 33 H 1.09000 * 109.47374 * 299.99517 * 3 2 1 34 34 H 1.08998 * 109.21273 * 37.78207 * 5 4 3 35 35 H 1.08997 * 109.18124 * 278.43293 * 5 4 3 36 36 H 1.08992 * 109.72184 * 287.05743 * 6 5 4 37 37 H 1.08996 * 109.72212 * 166.39577 * 6 5 4 38 38 H 1.09003 * 109.46970 * 90.00529 * 12 11 8 39 39 H 1.09000 * 109.46915 * 209.99531 * 12 11 8 40 40 H 1.08993 * 109.47253 * 329.99962 * 12 11 8 41 41 H 1.09003 * 109.47391 * 214.40706 * 13 11 8 42 42 H 1.09001 * 109.47768 * 334.41326 * 13 11 8 43 43 H 0.97006 * 119.99991 * 179.97438 * 17 16 14 44 44 H 1.08996 * 109.46812 * 60.76511 * 23 22 7 45 45 H 1.09003 * 109.46924 * 180.75971 * 23 22 7 46 46 H 1.08995 * 109.46938 * 300.76548 * 23 22 7 47 47 H 1.08994 * 109.47133 * 59.99690 * 24 22 7 48 48 H 1.08996 * 109.46707 * 179.97438 * 24 22 7 49 49 H 1.09003 * 109.46640 * 299.99409 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1817 1.4425 -1.2904 6 6 5.6092 1.9756 -1.1541 7 7 6.2372 1.3169 0.0038 8 16 7.5829 0.3677 -0.1700 9 8 7.5158 -0.6151 0.8542 10 8 7.6713 0.0459 -1.5512 11 7 8.8979 1.3134 0.1749 12 6 9.5074 1.2630 1.5060 13 6 9.4515 2.2003 -0.8512 14 6 8.8571 3.5769 -0.6993 15 1 8.1390 3.7716 0.0836 16 6 9.2307 4.5879 -1.5591 17 7 10.1054 4.3509 -2.5121 18 14 8.4944 6.2942 -1.3704 19 1 9.3400 7.0995 -0.4530 20 1 8.4341 6.9570 -2.6979 21 1 7.1236 6.1827 -0.8101 22 6 5.6205 1.5362 1.3206 23 6 6.1114 0.4688 2.3006 24 6 5.9997 2.9248 1.8393 25 6 4.1256 1.4418 1.1801 26 8 3.4539 1.3615 2.1866 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6768 1.9563 -0.8900 34 1 3.6281 2.0733 -1.9858 35 1 4.2144 0.4243 -1.6778 36 1 5.5858 3.0537 -0.9959 37 1 6.1746 1.7480 -2.0578 38 1 10.2829 0.4972 1.5218 39 1 9.9487 2.2318 1.7404 40 1 8.7443 1.0227 2.2462 41 1 10.5340 2.2574 -0.7366 42 1 9.2109 1.8078 -1.8392 43 1 10.3679 5.0621 -3.1173 44 1 7.1941 0.5405 2.4035 45 1 5.6430 0.6247 3.2724 46 1 5.8469 -0.5193 1.9240 47 1 5.6439 3.6829 1.1416 48 1 5.5414 3.0858 2.8150 49 1 7.0836 2.9950 1.9305 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408366003.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:11 Heat of formation + Delta-G solvation = -110.062917 kcal Electronic energy + Delta-G solvation = -32260.790031 eV Core-core repulsion = 28156.781421 eV Total energy + Delta-G solvation = -4104.008609 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.90664 -38.72930 -38.06508 -37.41846 -37.14481 -36.92148 -34.45616 -34.32761 -32.68676 -29.66759 -29.58200 -28.40600 -27.56950 -26.73084 -24.71860 -24.07786 -23.83210 -22.35420 -20.66447 -19.31783 -18.88748 -18.51017 -18.27908 -17.95264 -17.16410 -16.99698 -16.69960 -16.35193 -15.97888 -15.64009 -15.34477 -15.14350 -14.99899 -14.74731 -14.60459 -14.11286 -14.00223 -13.93235 -13.72543 -13.66434 -13.55632 -13.20640 -13.07589 -13.02652 -12.99836 -12.93266 -12.87344 -12.78003 -12.66187 -12.40688 -12.35848 -12.18171 -12.15624 -11.77908 -11.63119 -11.62345 -11.56957 -11.02657 -10.54010 -10.10337 -9.76689 -9.69930 -8.11687 -6.24591 -0.37728 1.46157 1.46820 1.48948 1.56954 1.72497 1.99709 2.45337 2.52815 3.20535 3.24517 3.32321 3.53211 3.82011 3.90352 3.98303 4.04210 4.06910 4.12942 4.27980 4.37927 4.46705 4.51115 4.56875 4.68760 4.70612 4.73902 4.75459 4.77014 4.84943 4.89491 4.96748 4.99196 5.05911 5.15968 5.19265 5.23051 5.26555 5.32462 5.38718 5.40862 5.51657 5.58489 5.80402 5.95053 6.15502 6.32629 6.88742 7.02185 7.45929 8.96476 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012259 B = 0.004786 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.436709 B = 5849.385503 C = 6752.157830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.104 3.896 4 N -0.597 5.597 5 C 0.101 3.899 6 C 0.104 3.896 7 N -0.996 5.996 8 S 2.795 3.205 9 O -0.992 6.992 10 O -1.009 7.009 11 N -1.000 6.000 12 C 0.092 3.908 13 C 0.260 3.740 14 C -0.533 4.533 15 H 0.079 0.921 16 C 0.017 3.983 17 N -0.929 5.929 18 Si 0.952 3.048 19 H -0.281 1.281 20 H -0.290 1.290 21 H -0.256 1.256 22 C 0.171 3.829 23 C -0.156 4.156 24 C -0.147 4.147 25 C 0.523 3.477 26 O -0.569 6.569 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.039 0.961 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.126 0.874 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.018 0.982 42 H 0.018 0.982 43 H 0.264 0.736 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.082 0.918 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.398 -3.664 4.804 15.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C -0.017 4.017 4 N -0.328 5.328 5 C -0.023 4.023 6 C -0.022 4.022 7 N -0.836 5.836 8 S 2.806 3.194 9 O -0.976 6.976 10 O -0.993 6.993 11 N -0.841 5.841 12 C -0.054 4.054 13 C 0.136 3.864 14 C -0.572 4.572 15 H 0.097 0.903 16 C -0.183 4.183 17 N -0.569 5.569 18 Si 0.778 3.222 19 H -0.207 1.207 20 H -0.216 1.216 21 H -0.180 1.180 22 C 0.081 3.919 23 C -0.214 4.214 24 C -0.206 4.206 25 C 0.310 3.690 26 O -0.448 6.448 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.126 0.874 34 H 0.144 0.856 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.122 0.878 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.073 0.927 44 H 0.105 0.895 45 H 0.102 0.898 46 H 0.089 0.911 47 H 0.082 0.918 48 H 0.101 0.899 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.572 -4.562 4.893 16.035 hybrid contribution 0.378 1.267 -0.217 1.340 sum -14.195 -3.295 4.675 15.304 Atomic orbital electron populations 1.21643 0.93434 1.02383 1.02527 1.21810 0.97576 0.96597 1.01469 1.21817 0.77969 0.97807 1.04151 1.47352 1.08069 1.71488 1.05858 1.21990 0.92650 1.03289 0.84400 1.21868 0.93002 0.98758 0.88544 1.58366 1.44865 1.67372 1.12975 1.01446 0.72326 0.73589 0.72045 1.93653 1.86732 1.59061 1.58147 1.93511 1.86619 1.83506 1.35678 1.57556 1.45945 1.59580 1.21030 1.21616 0.98768 1.03096 0.81892 1.18777 0.94385 0.88157 0.85055 1.21846 1.25435 0.94718 1.15231 0.90335 1.25703 0.95366 1.02449 0.94772 1.70067 1.33547 1.34425 1.18862 0.85643 0.79563 0.79900 0.77090 1.20704 1.21620 1.18012 1.20545 0.89058 0.99116 0.83224 1.22584 1.02953 0.97054 0.98779 1.22110 1.03437 0.93205 1.01880 1.20138 0.90107 0.75454 0.83342 1.90657 1.65959 1.51620 1.36572 0.90970 0.92152 0.92794 0.91453 0.94228 0.90900 0.87379 0.85644 0.90827 0.89418 0.87765 0.92513 0.90428 0.90209 0.96406 0.96396 0.92737 0.89540 0.89751 0.91123 0.91838 0.89904 0.90341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.91 71.98 0.71 -1.31 16 2 C -0.14 -2.59 6.25 30.59 0.19 -2.40 16 3 C 0.10 2.05 5.16 86.38 0.45 2.49 16 4 N -0.60 -14.64 2.81 -826.40 -2.32 -16.96 16 5 C 0.10 2.17 6.57 86.53 0.57 2.74 16 6 C 0.10 2.95 6.41 86.23 0.55 3.50 16 7 N -1.00 -32.02 2.99 -473.14 -1.42 -33.44 16 8 S 2.80 105.69 5.84 -56.49 -0.33 105.36 16 9 O -0.99 -37.23 12.08 -128.00 -1.55 -38.78 16 10 O -1.01 -44.42 15.45 -128.00 -1.98 -46.40 16 11 N -1.00 -38.88 3.22 -543.25 -1.75 -40.63 16 12 C 0.09 2.89 10.34 127.77 1.32 4.21 16 13 C 0.26 12.30 5.42 85.64 0.46 12.77 16 14 C -0.53 -25.46 9.39 25.60 0.24 -25.22 16 15 H 0.08 3.49 7.29 -2.91 -0.02 3.47 16 16 C 0.02 0.83 5.46 84.65 0.46 1.30 16 17 N -0.93 -51.06 13.29 21.44 0.28 -50.77 16 18 Si 0.95 39.38 29.54 68.60 2.03 41.40 16 19 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 22 C 0.17 5.14 1.01 2.67 0.00 5.14 16 23 C -0.16 -4.68 6.61 71.98 0.48 -4.21 16 24 C -0.15 -4.11 8.66 71.98 0.62 -3.48 16 25 C 0.52 15.68 6.34 87.79 0.56 16.24 16 26 O -0.57 -19.34 15.63 -3.02 -0.05 -19.39 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 1.64 7.23 -2.39 -0.02 1.62 16 33 H 0.11 1.44 7.80 -2.39 -0.02 1.42 16 34 H 0.13 1.80 7.84 -2.39 -0.02 1.78 16 35 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.09 2.44 7.51 -2.39 -0.02 2.42 16 37 H 0.10 3.26 6.95 -2.39 -0.02 3.25 16 38 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.08 2.40 8.07 -2.39 -0.02 2.39 16 40 H 0.08 2.19 5.07 -2.39 -0.01 2.18 16 41 H 0.02 0.91 8.11 -2.39 -0.02 0.89 16 42 H 0.02 0.96 7.05 -2.39 -0.02 0.94 16 43 H 0.26 13.83 8.31 -92.70 -0.77 13.06 16 44 H 0.09 2.55 3.72 -2.39 -0.01 2.54 16 45 H 0.08 2.34 7.87 -2.39 -0.02 2.32 16 46 H 0.07 2.33 6.73 -2.39 -0.02 2.32 16 47 H 0.06 1.78 7.50 -2.39 -0.02 1.76 16 48 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.08 2.23 7.63 -2.39 -0.02 2.21 16 Total: -1.00 -65.46 389.51 0.48 -64.98 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.94 Total: 22.86 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 6.62 Total: 11.77 kcal Atomic # 7 Polarization: -136.61 SS G_CDS: -5.20 Total: -141.81 kcal Atomic # 8 Polarization: -100.99 SS G_CDS: -3.57 Total: -104.56 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.40 kcal Atomic # 16 Polarization: 105.69 SS G_CDS: -0.33 Total: 105.36 kcal Total: -65.46 0.48 -64.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408366003.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.086 kcal (2) G-P(sol) polarization free energy of solvation -65.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds