Wall clock time and date at job start Wed Apr 1 2020 05:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47653 * 2 1 4 4 C 1.50699 * 109.47481 * 120.00349 * 2 1 3 5 5 O 1.21281 * 120.00032 * 99.99458 * 4 2 1 6 6 N 1.34780 * 119.99952 * 279.99968 * 4 2 1 7 7 C 1.46502 * 119.99824 * 179.97438 * 6 4 2 8 8 C 1.46500 * 119.99773 * 359.97438 * 6 4 2 9 9 S 1.81400 * 109.47132 * 240.00579 * 2 1 3 10 10 O 1.42106 * 110.54199 * 308.37179 * 9 2 1 11 11 O 1.42102 * 110.54681 * 171.62554 * 9 2 1 12 12 N 1.65600 * 104.45030 * 59.99672 * 9 2 1 13 13 C 1.46501 * 119.99844 * 65.00710 * 12 9 2 14 14 C 1.53000 * 109.46914 * 164.99825 * 13 12 9 15 15 C 1.53350 * 109.41773 * 295.12314 * 14 13 12 16 16 C 1.53198 * 109.14641 * 178.67869 * 15 14 13 17 17 N 1.46925 * 108.89335 * 54.57862 * 16 15 14 18 18 C 1.36931 * 120.63201 * 126.29969 * 17 16 15 19 19 H 1.08005 * 119.99889 * 331.83485 * 18 17 16 20 20 C 1.38813 * 120.00220 * 151.82683 * 18 17 16 21 21 N 1.31618 * 120.00004 * 343.08678 * 20 18 17 22 22 Si 1.86806 * 119.99953 * 163.08567 * 20 18 17 23 23 H 1.48496 * 109.47191 * 90.00149 * 22 20 18 24 24 H 1.48501 * 109.46981 * 210.00196 * 22 20 18 25 25 H 1.48500 * 109.46794 * 329.99854 * 22 20 18 26 26 C 1.46925 * 118.73856 * 306.31536 * 17 16 15 27 27 C 1.53044 * 109.45578 * 174.99670 * 14 13 12 28 28 H 1.09004 * 109.46606 * 299.99922 * 1 2 3 29 29 H 1.09004 * 109.47007 * 59.99638 * 1 2 3 30 30 H 1.08995 * 109.47077 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47085 * 359.97438 * 7 6 4 32 32 H 1.09004 * 109.46820 * 120.00442 * 7 6 4 33 33 H 1.08992 * 109.46911 * 239.99808 * 7 6 4 34 34 H 1.08996 * 109.47111 * 90.00254 * 8 6 4 35 35 H 1.09004 * 109.46422 * 209.99919 * 8 6 4 36 36 H 1.08994 * 109.47374 * 329.99593 * 8 6 4 37 37 H 0.97001 * 120.00090 * 245.00079 * 12 9 2 38 38 H 1.09000 * 109.47093 * 44.99608 * 13 12 9 39 39 H 1.08998 * 109.46676 * 284.99660 * 13 12 9 40 40 H 1.08997 * 109.45943 * 55.02788 * 14 13 12 41 41 H 1.08996 * 109.68537 * 58.71633 * 15 14 13 42 42 H 1.09000 * 109.47180 * 298.51549 * 15 14 13 43 43 H 1.08997 * 109.58387 * 294.71773 * 16 15 14 44 44 H 1.08993 * 109.58533 * 174.43928 * 16 15 14 45 45 H 0.96996 * 119.99787 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.58495 * 173.39541 * 26 17 16 47 47 H 1.09000 * 109.58924 * 293.68296 * 26 17 16 48 48 H 1.08996 * 109.49900 * 61.43384 * 27 14 13 49 49 H 1.09005 * 109.49524 * 301.33526 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.4064 -1.8617 1.1556 6 7 2.0660 -0.0665 2.4139 7 6 2.5539 -0.7574 3.6101 8 6 1.6146 1.3243 2.5041 9 16 2.1347 -0.8550 -1.4812 10 8 1.5221 -2.1312 -1.6053 11 8 3.5421 -0.7028 -1.6053 12 7 1.5164 0.0194 -2.7444 13 6 1.9457 1.4039 -2.9564 14 6 1.5366 1.8554 -4.3599 15 6 2.2961 1.0273 -5.4035 16 6 1.8575 1.4616 -6.8056 17 7 2.0428 2.9135 -6.9337 18 6 2.7726 3.4351 -7.9683 19 1 3.5657 2.8548 -8.4161 20 6 2.4928 4.7097 -8.4416 21 7 1.3463 5.2845 -8.1461 22 14 3.7437 5.6091 -9.4981 23 1 3.5010 5.2941 -10.9288 24 1 3.6113 7.0726 -9.2841 25 1 5.1130 5.1756 -9.1210 26 6 1.4305 3.7951 -5.9303 27 6 1.8730 3.3379 -4.5367 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 2.8425 -1.7756 3.3493 32 1 3.4173 -0.2256 4.0100 33 1 1.7645 -0.7849 4.3611 34 1 0.5484 1.3464 2.7292 35 1 2.1638 1.8338 3.2959 36 1 1.7959 1.8275 1.5544 37 1 0.8700 -0.3852 -3.3439 38 1 3.0291 1.4679 -2.8555 39 1 1.4731 2.0483 -2.2152 40 1 0.4645 1.7082 -4.4906 41 1 2.0746 -0.0308 -5.2645 42 1 3.3673 1.1934 -5.2896 43 1 0.8066 1.2129 -6.9531 44 1 2.4627 0.9486 -7.5530 45 1 1.1510 6.1753 -8.4766 46 1 1.7561 4.8216 -6.0986 47 1 0.3448 3.7386 -6.0082 48 1 2.9482 3.4822 -4.4308 49 1 1.3506 3.9224 -3.7792 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447749770.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:22 Heat of formation + Delta-G solvation = -84.436108 kcal Electronic energy + Delta-G solvation = -29812.220786 eV Core-core repulsion = 25709.323438 eV Total energy + Delta-G solvation = -4102.897348 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.56532 -38.18580 -37.19712 -36.26138 -35.98819 -35.36498 -33.84464 -32.65061 -30.66099 -29.63623 -28.61431 -27.00292 -26.53480 -24.79898 -23.90089 -22.16002 -21.20731 -20.56713 -19.44845 -18.93240 -18.29828 -17.37830 -17.16500 -16.61374 -16.43791 -16.14285 -15.87097 -14.95976 -14.70797 -14.65983 -14.21161 -14.14090 -13.89093 -13.50746 -13.44550 -13.25330 -13.18489 -13.00779 -12.84503 -12.79770 -12.55492 -12.43902 -12.38478 -12.18569 -12.11988 -12.02699 -11.80679 -11.35007 -10.99762 -10.98991 -10.69932 -10.53930 -10.51587 -10.24734 -10.22371 -9.89314 -9.69606 -9.46835 -9.38108 -9.32894 -8.46612 -6.65736 -5.78991 -3.20588 -0.02110 1.90982 2.29723 2.65935 3.37529 3.44583 3.47663 3.52462 3.76854 3.82817 4.29350 4.45928 4.50472 4.55173 4.73768 4.81142 4.88821 4.96307 5.03079 5.09161 5.09417 5.11740 5.31732 5.35142 5.39137 5.43032 5.50497 5.62386 5.76713 5.79981 5.87275 6.05620 6.17497 6.32733 6.52559 6.57896 6.58622 6.66913 6.76203 6.84252 6.88788 7.02453 7.35697 7.40094 7.64367 7.80503 8.46051 9.22422 9.85961 10.42640 11.29697 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022922 B = 0.002323 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.219611 B =12048.027581 C =12488.013717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.640 4.640 3 H 0.156 0.844 4 C 0.545 3.455 5 O -0.531 6.531 6 N -0.609 5.609 7 C 0.076 3.924 8 C 0.072 3.928 9 S 2.642 3.358 10 O -0.938 6.938 11 O -0.942 6.942 12 N -1.112 6.112 13 C 0.114 3.886 14 C -0.082 4.082 15 C -0.130 4.130 16 C 0.144 3.856 17 N -0.593 5.593 18 C -0.250 4.250 19 H 0.065 0.935 20 C 0.001 3.999 21 N -0.904 5.904 22 Si 0.901 3.099 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.171 3.829 27 C -0.135 4.135 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.420 0.580 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.052 0.948 42 H 0.061 0.939 43 H 0.016 0.984 44 H 0.053 0.947 45 H 0.253 0.747 46 H 0.087 0.913 47 H 0.017 0.983 48 H 0.058 0.942 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.521 -6.441 24.181 25.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.747 4.747 3 H 0.174 0.826 4 C 0.331 3.669 5 O -0.408 6.408 6 N -0.342 5.342 7 C -0.067 4.067 8 C -0.071 4.071 9 S 2.728 3.272 10 O -0.927 6.927 11 O -0.932 6.932 12 N -0.874 5.874 13 C -0.012 4.012 14 C -0.102 4.102 15 C -0.169 4.169 16 C 0.018 3.982 17 N -0.315 5.315 18 C -0.379 4.379 19 H 0.082 0.918 20 C -0.197 4.197 21 N -0.549 5.549 22 Si 0.731 3.269 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.045 3.955 27 C -0.175 4.175 28 H 0.098 0.902 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.256 0.744 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.034 0.966 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.105 0.895 47 H 0.035 0.965 48 H 0.077 0.923 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.699 -7.541 24.204 25.495 hybrid contribution -0.108 1.233 -0.312 1.277 sum -2.807 -6.307 23.893 24.870 Atomic orbital electron populations 1.21497 0.87042 1.05015 1.05212 1.31065 1.09760 1.16216 1.17644 0.82595 1.19332 0.77582 0.86068 0.83903 1.90856 1.48200 1.16600 1.85134 1.47546 1.64126 1.14039 1.08524 1.21820 0.99351 0.99562 0.85918 1.21963 1.00381 0.80991 1.03731 1.04398 0.74650 0.73776 0.74390 1.93585 1.77969 1.36653 1.84543 1.93605 1.28984 1.86156 1.84466 1.55629 1.61313 1.25696 1.44743 1.21612 1.00290 0.79863 0.99423 1.21296 1.00249 0.97035 0.91654 1.22133 1.00237 0.97525 0.96990 1.20908 0.97262 0.86531 0.93528 1.44049 1.60947 0.99524 1.27029 1.19184 1.09380 0.99463 1.09902 0.91770 1.25033 0.96199 0.99663 0.98852 1.70026 1.20786 1.15491 1.48625 0.86317 0.81349 0.79000 0.80245 1.21432 1.21599 1.20490 1.20754 0.94740 0.96354 0.83620 1.22225 1.01213 0.93254 1.00849 0.90242 0.89293 0.90033 0.89042 0.91577 0.91709 0.91783 0.90286 0.90425 0.74379 0.90293 0.92232 0.91050 0.92942 0.92042 0.96586 0.92877 0.93705 0.89456 0.96458 0.92311 0.93145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.83 8.98 37.16 0.33 -0.50 16 2 C -0.64 -5.58 2.54 -27.88 -0.07 -5.65 16 3 H 0.16 0.86 6.31 -51.92 -0.33 0.53 16 4 C 0.55 6.00 6.85 -10.98 -0.08 5.93 16 5 O -0.53 -7.99 15.17 4.23 0.06 -7.92 16 6 N -0.61 -4.70 3.27 -189.52 -0.62 -5.32 16 7 C 0.08 0.47 10.69 59.85 0.64 1.11 16 8 C 0.07 0.29 9.60 59.85 0.57 0.86 16 9 S 2.64 33.65 4.23 -107.50 -0.45 33.19 16 10 O -0.94 -14.76 17.71 -60.10 -1.06 -15.83 16 11 O -0.94 -15.44 17.50 -57.54 -1.01 -16.44 16 12 N -1.11 -11.90 5.08 -10.61 -0.05 -11.96 16 13 C 0.11 1.28 5.52 -4.04 -0.02 1.26 16 14 C -0.08 -1.19 2.18 -90.42 -0.20 -1.39 16 15 C -0.13 -2.16 5.28 -26.45 -0.14 -2.30 16 16 C 0.14 2.95 6.50 -3.71 -0.02 2.93 16 17 N -0.59 -14.48 2.99 -172.32 -0.52 -15.00 16 18 C -0.25 -6.78 9.58 -15.06 -0.14 -6.93 16 19 H 0.06 1.73 7.89 -52.48 -0.41 1.32 16 20 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 21 N -0.90 -25.79 11.20 55.49 0.62 -25.17 16 22 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.17 3.86 5.30 -3.71 -0.02 3.84 16 27 C -0.14 -2.29 5.36 -26.61 -0.14 -2.43 16 28 H 0.08 0.36 6.94 -51.93 -0.36 -0.01 16 29 H 0.09 0.43 7.91 -51.93 -0.41 0.02 16 30 H 0.08 0.62 8.11 -51.93 -0.42 0.19 16 31 H 0.09 0.74 6.90 -51.93 -0.36 0.39 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.18 7.66 -51.93 -0.40 -0.22 16 35 H 0.08 0.19 8.07 -51.93 -0.42 -0.23 16 36 H 0.08 0.25 5.94 -51.93 -0.31 -0.06 16 37 H 0.42 4.06 8.34 -34.47 -0.29 3.78 16 38 H 0.08 0.96 7.69 -51.93 -0.40 0.56 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.05 0.77 7.52 -51.93 -0.39 0.38 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 45 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.09 2.23 6.06 -51.93 -0.31 1.91 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 396.23 15.07 5.97 5.97 Total: -1.00 -37.17 396.23 -9.62 -46.79 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -8.16 Total: -1.45 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 0.63 Total: -3.33 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -0.57 Total: -57.45 kcal Atomic # 8 Polarization: -38.19 SS G_CDS: -2.01 Total: -40.20 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Atomic # 16 Polarization: 33.65 SS G_CDS: -0.45 Total: 33.19 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.17 -9.62 -46.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447749770.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.646 kcal (2) G-P(sol) polarization free energy of solvation -37.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds