Wall clock time and date at job start Wed Apr 1 2020 05:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47653 * 2 1 4 4 C 1.50699 * 109.47481 * 120.00349 * 2 1 3 5 5 O 1.21281 * 120.00032 * 99.99458 * 4 2 1 6 6 N 1.34780 * 119.99952 * 279.99968 * 4 2 1 7 7 C 1.46502 * 119.99824 * 179.97438 * 6 4 2 8 8 C 1.46500 * 119.99773 * 359.97438 * 6 4 2 9 9 S 1.81400 * 109.47132 * 240.00579 * 2 1 3 10 10 O 1.42106 * 110.54199 * 308.37179 * 9 2 1 11 11 O 1.42102 * 110.54681 * 171.62554 * 9 2 1 12 12 N 1.65600 * 104.45030 * 59.99672 * 9 2 1 13 13 C 1.46501 * 119.99844 * 65.00710 * 12 9 2 14 14 C 1.53000 * 109.46914 * 164.99825 * 13 12 9 15 15 C 1.53350 * 109.41773 * 295.12314 * 14 13 12 16 16 C 1.53198 * 109.14641 * 178.67869 * 15 14 13 17 17 N 1.46925 * 108.89335 * 54.57862 * 16 15 14 18 18 C 1.36931 * 120.63201 * 126.29969 * 17 16 15 19 19 H 1.08005 * 119.99889 * 331.83485 * 18 17 16 20 20 C 1.38813 * 120.00220 * 151.82683 * 18 17 16 21 21 N 1.31618 * 120.00004 * 343.08678 * 20 18 17 22 22 Si 1.86806 * 119.99953 * 163.08567 * 20 18 17 23 23 H 1.48496 * 109.47191 * 90.00149 * 22 20 18 24 24 H 1.48501 * 109.46981 * 210.00196 * 22 20 18 25 25 H 1.48500 * 109.46794 * 329.99854 * 22 20 18 26 26 C 1.46925 * 118.73856 * 306.31536 * 17 16 15 27 27 C 1.53044 * 109.45578 * 174.99670 * 14 13 12 28 28 H 1.09004 * 109.46606 * 299.99922 * 1 2 3 29 29 H 1.09004 * 109.47007 * 59.99638 * 1 2 3 30 30 H 1.08995 * 109.47077 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47085 * 359.97438 * 7 6 4 32 32 H 1.09004 * 109.46820 * 120.00442 * 7 6 4 33 33 H 1.08992 * 109.46911 * 239.99808 * 7 6 4 34 34 H 1.08996 * 109.47111 * 90.00254 * 8 6 4 35 35 H 1.09004 * 109.46422 * 209.99919 * 8 6 4 36 36 H 1.08994 * 109.47374 * 329.99593 * 8 6 4 37 37 H 0.97001 * 120.00090 * 245.00079 * 12 9 2 38 38 H 1.09000 * 109.47093 * 44.99608 * 13 12 9 39 39 H 1.08998 * 109.46676 * 284.99660 * 13 12 9 40 40 H 1.08997 * 109.45943 * 55.02788 * 14 13 12 41 41 H 1.08996 * 109.68537 * 58.71633 * 15 14 13 42 42 H 1.09000 * 109.47180 * 298.51549 * 15 14 13 43 43 H 1.08997 * 109.58387 * 294.71773 * 16 15 14 44 44 H 1.08993 * 109.58533 * 174.43928 * 16 15 14 45 45 H 0.96996 * 119.99787 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.58495 * 173.39541 * 26 17 16 47 47 H 1.09000 * 109.58924 * 293.68296 * 26 17 16 48 48 H 1.08996 * 109.49900 * 61.43384 * 27 14 13 49 49 H 1.09005 * 109.49524 * 301.33526 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.4064 -1.8617 1.1556 6 7 2.0660 -0.0665 2.4139 7 6 2.5539 -0.7574 3.6101 8 6 1.6146 1.3243 2.5041 9 16 2.1347 -0.8550 -1.4812 10 8 1.5221 -2.1312 -1.6053 11 8 3.5421 -0.7028 -1.6053 12 7 1.5164 0.0194 -2.7444 13 6 1.9457 1.4039 -2.9564 14 6 1.5366 1.8554 -4.3599 15 6 2.2961 1.0273 -5.4035 16 6 1.8575 1.4616 -6.8056 17 7 2.0428 2.9135 -6.9337 18 6 2.7726 3.4351 -7.9683 19 1 3.5657 2.8548 -8.4161 20 6 2.4928 4.7097 -8.4416 21 7 1.3463 5.2845 -8.1461 22 14 3.7437 5.6091 -9.4981 23 1 3.5010 5.2941 -10.9288 24 1 3.6113 7.0726 -9.2841 25 1 5.1130 5.1756 -9.1210 26 6 1.4305 3.7951 -5.9303 27 6 1.8730 3.3379 -4.5367 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 2.8425 -1.7756 3.3493 32 1 3.4173 -0.2256 4.0100 33 1 1.7645 -0.7849 4.3611 34 1 0.5484 1.3464 2.7292 35 1 2.1638 1.8338 3.2959 36 1 1.7959 1.8275 1.5544 37 1 0.8700 -0.3852 -3.3439 38 1 3.0291 1.4679 -2.8555 39 1 1.4731 2.0483 -2.2152 40 1 0.4645 1.7082 -4.4906 41 1 2.0746 -0.0308 -5.2645 42 1 3.3673 1.1934 -5.2896 43 1 0.8066 1.2129 -6.9531 44 1 2.4627 0.9486 -7.5530 45 1 1.1510 6.1753 -8.4766 46 1 1.7561 4.8216 -6.0986 47 1 0.3448 3.7386 -6.0082 48 1 2.9482 3.4822 -4.4308 49 1 1.3506 3.9224 -3.7792 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447749770.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:21 Heat of formation + Delta-G solvation = -113.546468 kcal Electronic energy + Delta-G solvation = -29813.483106 eV Core-core repulsion = 25709.323438 eV Total energy + Delta-G solvation = -4104.159668 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.29236 -39.57114 -38.28376 -37.12829 -36.91888 -36.62877 -34.63831 -34.15249 -32.28893 -31.26638 -29.00996 -28.06526 -27.50640 -25.59981 -25.29100 -23.70452 -22.64875 -21.39743 -20.70365 -19.98517 -19.13002 -18.61925 -18.18237 -17.85252 -17.32453 -16.94128 -16.73340 -16.56043 -15.79797 -15.68952 -15.46038 -15.25117 -14.94020 -14.76249 -14.73827 -14.23632 -14.03682 -13.84931 -13.66123 -13.57081 -13.40347 -13.31947 -13.27675 -13.19795 -13.16427 -13.01169 -12.95679 -12.94194 -12.74529 -12.52086 -12.24943 -11.96095 -11.78304 -11.76427 -11.46734 -11.30113 -11.10046 -11.06591 -10.50115 -10.34679 -9.87842 -8.62323 -7.85171 -5.29237 -0.95012 1.16862 1.46767 1.48342 1.58075 1.59273 1.88947 2.53039 2.73585 3.06831 3.07078 3.28948 3.65810 3.75074 3.77303 3.89385 4.02823 4.13633 4.23303 4.36090 4.47319 4.48318 4.57041 4.60749 4.63033 4.66450 4.73505 4.75226 4.83368 4.88540 4.90265 4.94989 5.02480 5.11117 5.12930 5.27796 5.29247 5.38085 5.39661 5.49629 5.60273 5.71247 5.88384 5.99829 6.09186 6.43218 6.71331 7.19647 7.92143 8.41939 9.20537 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022922 B = 0.002323 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.219611 B =12048.027581 C =12488.013717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.615 4.615 3 H 0.197 0.803 4 C 0.528 3.472 5 O -0.587 6.587 6 N -0.602 5.602 7 C 0.068 3.932 8 C 0.058 3.942 9 S 2.639 3.361 10 O -0.980 6.980 11 O -0.991 6.991 12 N -1.104 6.104 13 C 0.117 3.883 14 C -0.076 4.076 15 C -0.123 4.123 16 C 0.139 3.861 17 N -0.613 5.613 18 C -0.262 4.262 19 H 0.058 0.942 20 C -0.049 4.049 21 N -0.932 5.932 22 Si 0.963 3.037 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.274 1.274 26 C 0.173 3.827 27 C -0.123 4.123 28 H 0.108 0.892 29 H 0.112 0.888 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.426 0.574 38 H 0.070 0.930 39 H 0.110 0.890 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.046 0.954 43 H 0.017 0.983 44 H 0.042 0.958 45 H 0.250 0.750 46 H 0.051 0.949 47 H 0.000 1.000 48 H 0.050 0.950 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.412 -4.903 26.755 27.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.727 4.727 3 H 0.214 0.786 4 C 0.315 3.685 5 O -0.469 6.469 6 N -0.333 5.333 7 C -0.074 4.074 8 C -0.083 4.083 9 S 2.731 3.269 10 O -0.970 6.970 11 O -0.981 6.981 12 N -0.867 5.867 13 C -0.008 4.008 14 C -0.096 4.096 15 C -0.162 4.162 16 C 0.014 3.986 17 N -0.337 5.337 18 C -0.393 4.393 19 H 0.076 0.924 20 C -0.244 4.244 21 N -0.578 5.578 22 Si 0.791 3.209 23 H -0.214 1.214 24 H -0.215 1.215 25 H -0.199 1.199 26 C 0.048 3.952 27 C -0.162 4.162 28 H 0.127 0.873 29 H 0.131 0.869 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.263 0.737 38 H 0.088 0.912 39 H 0.127 0.873 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.065 0.935 43 H 0.035 0.965 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.070 0.930 47 H 0.018 0.982 48 H 0.069 0.931 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.580 -6.014 26.771 27.671 hybrid contribution 0.119 0.770 -1.040 1.299 sum -3.461 -5.244 25.731 26.487 Atomic orbital electron populations 1.21685 0.84828 1.04869 1.07806 1.30784 1.11376 1.16995 1.13507 0.78566 1.19773 0.77574 0.85750 0.85423 1.90839 1.50932 1.19075 1.86046 1.47759 1.62504 1.15372 1.07685 1.21975 1.01032 0.98439 0.85927 1.22358 1.01910 0.78718 1.05342 1.04019 0.73613 0.73595 0.75668 1.93528 1.78253 1.39500 1.85709 1.93546 1.32021 1.86766 1.85738 1.55324 1.61194 1.25398 1.44808 1.21620 1.00448 0.80455 0.98304 1.21198 1.00605 0.94836 0.92969 1.22028 0.99631 0.99241 0.95280 1.21049 0.97162 0.84536 0.95902 1.44343 1.60960 1.01250 1.27104 1.19452 1.09501 0.99840 1.10500 0.92410 1.25721 0.97810 1.00394 1.00510 1.70163 1.22233 1.15507 1.49917 0.85351 0.79358 0.77631 0.78541 1.21360 1.21506 1.19941 1.20652 0.93493 0.94577 0.86516 1.22021 1.00967 0.95395 0.97860 0.87333 0.86936 0.91717 0.91742 0.89629 0.89358 0.89793 0.88347 0.89103 0.73654 0.91178 0.87258 0.89762 0.90813 0.93466 0.96493 0.93985 0.94081 0.93031 0.98178 0.93127 0.89436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 8.98 71.98 0.65 -0.53 16 2 C -0.61 -8.79 2.54 29.85 0.08 -8.72 16 3 H 0.20 1.11 6.31 -2.39 -0.02 1.09 16 4 C 0.53 10.80 6.85 87.66 0.60 11.40 16 5 O -0.59 -18.10 15.17 -1.76 -0.03 -18.13 16 6 N -0.60 -7.58 3.27 -871.90 -2.85 -10.43 16 7 C 0.07 0.73 10.69 127.77 1.37 2.09 16 8 C 0.06 0.18 9.60 127.77 1.23 1.41 16 9 S 2.64 64.55 4.23 -56.49 -0.24 64.31 16 10 O -0.98 -31.36 17.71 -125.20 -2.22 -33.58 16 11 O -0.99 -32.48 17.50 -127.65 -2.23 -34.71 16 12 N -1.10 -20.67 5.08 -187.49 -0.95 -21.62 16 13 C 0.12 2.16 5.52 86.38 0.48 2.64 16 14 C -0.08 -1.98 2.18 -10.66 -0.02 -2.00 16 15 C -0.12 -3.95 5.28 30.78 0.16 -3.79 16 16 C 0.14 5.72 6.50 86.36 0.56 6.28 16 17 N -0.61 -30.35 2.99 -699.09 -2.09 -32.45 16 18 C -0.26 -14.55 9.58 84.03 0.81 -13.75 16 19 H 0.06 3.19 7.89 -2.91 -0.02 3.17 16 20 C -0.05 -2.72 4.92 84.86 0.42 -2.31 16 21 N -0.93 -54.23 11.20 21.65 0.24 -53.99 16 22 Si 0.96 44.87 29.59 68.60 2.03 46.90 16 23 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 24 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 25 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 26 C 0.17 7.80 5.30 86.36 0.46 8.26 16 27 C -0.12 -3.86 5.36 30.68 0.16 -3.69 16 28 H 0.11 0.38 6.94 -2.38 -0.02 0.37 16 29 H 0.11 0.50 7.91 -2.38 -0.02 0.48 16 30 H 0.06 0.84 8.11 -2.39 -0.02 0.82 16 31 H 0.06 1.06 6.90 -2.39 -0.02 1.05 16 32 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.08 0.00 7.66 -2.39 -0.02 -0.02 16 35 H 0.10 -0.02 8.07 -2.39 -0.02 -0.04 16 36 H 0.09 0.06 5.94 -2.39 -0.01 0.04 16 37 H 0.43 7.17 8.34 -96.74 -0.81 6.36 16 38 H 0.07 1.48 7.69 -2.39 -0.02 1.46 16 39 H 0.11 1.01 8.14 -2.39 -0.02 1.00 16 40 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.07 2.05 7.52 -2.39 -0.02 2.03 16 42 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 43 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.04 1.76 7.93 -2.39 -0.02 1.75 16 45 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 46 H 0.05 2.68 6.06 -2.39 -0.01 2.67 16 47 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 48 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 Total: -1.00 -87.32 396.23 -1.27 -88.58 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 0.14 Total: 7.83 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 6.94 Total: -2.71 kcal Atomic # 7 Polarization: -112.83 SS G_CDS: -5.66 Total: -118.48 kcal Atomic # 8 Polarization: -81.94 SS G_CDS: -4.48 Total: -86.42 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: 64.55 SS G_CDS: -0.24 Total: 64.31 kcal Total: -87.32 -1.27 -88.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447749770.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.962 kcal (2) G-P(sol) polarization free energy of solvation -87.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds