Wall clock time and date at job start Wed Apr 1 2020 05:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.50701 * 109.46858 * 240.00187 * 2 1 3 5 5 H 1.08004 * 119.99849 * 240.00146 * 4 2 1 6 6 C 1.37871 * 120.00038 * 60.00151 * 4 2 1 7 7 N 1.31513 * 120.00443 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99926 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47220 * 59.99826 * 8 6 4 10 10 H 1.48502 * 109.47230 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47170 * 300.00174 * 8 6 4 12 12 N 1.46495 * 109.46784 * 120.00118 * 2 1 3 13 13 C 1.46502 * 120.00241 * 60.00307 * 12 2 1 14 14 S 1.65607 * 119.99857 * 239.99476 * 12 2 1 15 15 O 1.42104 * 106.39787 * 156.46373 * 14 12 2 16 16 O 1.42099 * 106.40090 * 23.54679 * 14 12 2 17 17 N 1.65591 * 107.21919 * 270.00170 * 14 12 2 18 18 C 1.46508 * 119.99973 * 65.00133 * 17 14 12 19 19 C 1.52999 * 109.47156 * 164.99545 * 18 17 14 20 20 N 1.46895 * 109.47191 * 179.97438 * 19 18 17 21 21 C 1.47053 * 110.99922 * 314.26633 * 20 19 18 22 22 C 1.55010 * 108.79529 * 181.56502 * 21 20 19 23 23 H 1.08999 * 112.15415 * 186.24317 * 22 21 20 24 24 C 1.54719 * 108.45343 * 311.29146 * 22 21 20 25 25 C 1.54549 * 103.82223 * 87.79131 * 24 22 21 26 26 C 1.54709 * 103.82412 * 0.02562 * 25 24 22 27 27 H 1.09001 * 112.16355 * 147.18690 * 26 25 24 28 28 C 1.47047 * 111.00174 * 190.00057 * 20 19 18 29 29 O 1.44651 * 106.58866 * 63.11759 * 22 21 20 30 30 H 1.08999 * 109.47075 * 300.00369 * 1 2 3 31 31 H 1.09003 * 109.46532 * 59.99817 * 1 2 3 32 32 H 1.08995 * 109.47354 * 179.97438 * 1 2 3 33 33 H 0.96995 * 120.00265 * 179.97438 * 7 6 4 34 34 H 1.08999 * 109.46821 * 269.99825 * 13 12 2 35 35 H 1.08998 * 109.47300 * 29.98965 * 13 12 2 36 36 H 1.08994 * 109.47544 * 150.00053 * 13 12 2 37 37 H 0.96998 * 120.00135 * 245.00144 * 17 14 12 38 38 H 1.09002 * 109.46762 * 44.99734 * 18 17 14 39 39 H 1.08996 * 109.46963 * 285.00120 * 18 17 14 40 40 H 1.09008 * 109.46899 * 60.00093 * 19 18 17 41 41 H 1.08998 * 109.47036 * 300.00578 * 19 18 17 42 42 H 1.08998 * 109.56660 * 301.60920 * 21 20 19 43 43 H 1.08994 * 109.57110 * 61.85222 * 21 20 19 44 44 H 1.09003 * 110.56048 * 206.38019 * 24 22 21 45 45 H 1.09001 * 110.55335 * 329.20618 * 24 22 21 46 46 H 1.09003 * 110.55622 * 241.41527 * 25 24 22 47 47 H 1.09006 * 110.55402 * 118.58578 * 25 24 22 48 48 H 1.09006 * 109.56951 * 58.38976 * 28 20 19 49 49 H 1.08994 * 109.67242 * 298.08921 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.8280 -2.5198 -4.0082 10 1 1.8279 -0.4191 -5.2205 11 1 3.8075 -1.1189 -4.0077 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4279 14 16 2.9705 0.1142 2.2862 15 8 2.8228 -0.5647 3.5259 16 8 2.6904 1.4972 2.1193 17 7 4.5437 -0.1043 1.8180 18 6 5.0140 0.4529 0.5473 19 6 6.5437 0.4449 0.5218 20 7 7.0152 1.0030 -0.7525 21 6 6.2655 0.4384 -1.8846 22 6 6.8291 1.0302 -3.2018 23 1 6.2421 0.7324 -4.0705 24 6 6.9262 2.5665 -3.0463 25 6 8.3229 2.7870 -2.4225 26 6 8.8943 1.3564 -2.2802 27 1 9.9763 1.3310 -2.4095 28 6 8.4619 0.7961 -0.9154 29 8 8.2045 0.5922 -3.2961 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 0.7088 1.1613 -3.4844 34 1 0.7376 -2.1444 1.9992 35 1 1.5294 -2.5969 0.4708 36 1 2.4628 -2.5819 1.9863 37 1 5.1540 -0.6012 2.3851 38 1 4.6542 1.4767 0.4442 39 1 4.6336 -0.1505 -0.2769 40 1 6.9035 -0.5790 0.6249 41 1 6.9240 1.0482 1.3461 42 1 6.3752 -0.6461 -1.8905 43 1 5.2112 0.6982 -1.7903 44 1 6.8598 3.0546 -4.0187 45 1 6.1466 2.9336 -2.3788 46 1 8.2351 3.2634 -1.4460 47 1 8.9484 3.3843 -3.0860 48 1 8.6856 -0.2698 -0.8710 49 1 8.9985 1.3150 -0.1212 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451883277.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:55 Heat of formation + Delta-G solvation = -104.800329 kcal Electronic energy + Delta-G solvation = -31450.347108 eV Core-core repulsion = 27346.566701 eV Total energy + Delta-G solvation = -4103.780407 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.72117 -36.97237 -36.58499 -36.15559 -35.25250 -34.19083 -32.65223 -31.90751 -31.43235 -29.11348 -28.47759 -25.56600 -25.32241 -25.19258 -24.41042 -21.77892 -20.97398 -20.77871 -19.56431 -18.89384 -17.34177 -16.90130 -16.73141 -16.52389 -15.96874 -15.89729 -15.17026 -14.98045 -14.67231 -14.39814 -14.24440 -13.92000 -13.72929 -13.51117 -13.22989 -12.85390 -12.73223 -12.67451 -12.12473 -12.00750 -11.79534 -11.73156 -11.60450 -11.47394 -11.41904 -11.37986 -11.24621 -11.15841 -10.99666 -10.96520 -10.88711 -10.74271 -10.48220 -10.41780 -10.25335 -10.10235 -9.58831 -9.38781 -9.02695 -8.54146 -8.34853 -8.00112 -6.15220 -4.24569 1.23780 3.18607 3.26574 3.27764 3.43169 3.85128 3.93471 4.16447 4.28588 4.63541 4.75542 4.78274 4.85189 4.94917 5.08077 5.13755 5.16781 5.22325 5.32208 5.43093 5.52257 5.60113 5.61466 5.68397 5.76746 5.85539 5.89536 5.95625 6.07027 6.15152 6.15934 6.18721 6.26199 6.29227 6.37946 6.63583 6.79472 6.85202 6.86207 6.97533 7.01689 7.09175 7.22998 7.50103 7.57409 7.73588 8.00328 8.20801 8.78565 9.41918 10.89305 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009877 B = 0.005031 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.242951 B = 5563.736018 C = 7534.494749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.267 3.733 3 H 0.059 0.941 4 C -0.528 4.528 5 H 0.061 0.939 6 C 0.069 3.931 7 N -0.883 5.883 8 Si 0.888 3.112 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.991 5.991 13 C 0.108 3.892 14 S 2.784 3.216 15 O -1.001 7.001 16 O -0.980 6.980 17 N -1.131 6.131 18 C 0.114 3.886 19 C 0.053 3.947 20 N -0.527 5.527 21 C 0.019 3.981 22 C 0.073 3.927 23 H 0.116 0.884 24 C -0.135 4.135 25 C -0.133 4.133 26 C 0.071 3.929 27 H 0.111 0.889 28 C 0.031 3.969 29 O -0.375 6.375 30 H 0.012 0.988 31 H 0.092 0.908 32 H 0.032 0.968 33 H 0.265 0.735 34 H 0.042 0.958 35 H 0.079 0.921 36 H 0.049 0.951 37 H 0.406 0.594 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.038 0.962 41 H 0.080 0.920 42 H 0.045 0.955 43 H 0.107 0.893 44 H 0.066 0.934 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.063 0.937 48 H 0.041 0.959 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.084 -0.136 1.842 13.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.077 0.923 4 C -0.567 4.567 5 H 0.080 0.920 6 C -0.134 4.134 7 N -0.520 5.520 8 Si 0.716 3.284 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.834 5.834 13 C -0.038 4.038 14 S 2.793 3.207 15 O -0.985 6.985 16 O -0.963 6.963 17 N -0.890 5.890 18 C -0.012 4.012 19 C -0.076 4.076 20 N -0.253 5.253 21 C -0.109 4.109 22 C 0.015 3.985 23 H 0.133 0.867 24 C -0.173 4.173 25 C -0.171 4.171 26 C 0.013 3.987 27 H 0.129 0.871 28 C -0.098 4.098 29 O -0.294 6.294 30 H 0.031 0.969 31 H 0.111 0.889 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.238 0.762 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.056 0.944 41 H 0.098 0.902 42 H 0.064 0.936 43 H 0.125 0.875 44 H 0.084 0.916 45 H 0.108 0.892 46 H 0.102 0.898 47 H 0.082 0.918 48 H 0.059 0.941 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 12.564 0.953 2.197 12.790 hybrid contribution 0.732 -1.810 -0.845 2.127 sum 13.296 -0.857 1.352 13.392 Atomic orbital electron populations 1.22052 0.98014 0.99644 1.00743 1.18746 0.91960 0.92712 0.80195 0.92309 1.21303 1.32219 1.13118 0.90100 0.92044 1.24882 0.94925 0.94872 0.98764 1.69863 1.35784 1.22402 1.23962 0.86725 0.79384 0.79853 0.82446 1.20366 1.21189 1.19904 1.57707 1.64401 1.21407 1.39851 1.21159 0.98930 0.81956 1.01775 1.01753 0.72591 0.73714 0.72668 1.93547 1.85959 1.76214 1.42749 1.93581 1.83822 1.32433 1.86510 1.56005 1.30716 1.70834 1.31448 1.21430 0.93756 1.00547 0.85458 1.22281 0.95168 0.98072 0.92100 1.62138 1.03095 1.58189 1.01883 1.23269 1.00051 0.97507 0.90043 1.23770 0.83348 0.94005 0.97366 0.86653 1.22791 0.98107 0.95256 1.01123 1.22791 0.96205 0.96263 1.01855 1.23416 0.97278 0.90966 0.87056 0.87149 1.22810 0.89231 0.99598 0.98117 1.89240 1.20530 1.63393 1.56213 0.96914 0.88928 0.94914 0.92504 0.93927 0.90247 0.93271 0.76222 0.89586 0.89637 0.94426 0.90169 0.93631 0.87539 0.91574 0.89244 0.89828 0.91777 0.94055 0.89882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 8.97 37.16 0.33 -3.02 16 2 C 0.27 6.18 2.62 -69.08 -0.18 6.00 16 3 H 0.06 1.51 6.91 -51.93 -0.36 1.15 16 4 C -0.53 -12.54 7.66 -34.44 -0.26 -12.81 16 5 H 0.06 1.43 7.33 -52.48 -0.38 1.04 16 6 C 0.07 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.88 -22.89 11.32 55.43 0.63 -22.26 16 8 Si 0.89 19.17 29.54 -169.99 -5.02 14.15 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 10 H -0.29 -6.28 7.11 56.52 0.40 -5.87 16 11 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 12 N -0.99 -19.81 3.12 -115.85 -0.36 -20.17 16 13 C 0.11 1.89 9.28 59.85 0.56 2.44 16 14 S 2.78 53.19 6.09 -107.50 -0.66 52.53 16 15 O -1.00 -20.20 17.21 -57.17 -0.98 -21.18 16 16 O -0.98 -21.92 16.17 -57.17 -0.92 -22.84 16 17 N -1.13 -17.20 6.05 -10.61 -0.06 -17.27 16 18 C 0.11 1.77 5.49 -4.04 -0.02 1.75 16 19 C 0.05 0.66 5.43 -3.83 -0.02 0.64 16 20 N -0.53 -6.78 3.95 -232.58 -0.92 -7.69 16 21 C 0.02 0.28 4.27 -2.68 -0.01 0.27 16 22 C 0.07 1.01 4.76 -24.76 -0.12 0.90 16 23 H 0.12 1.61 8.14 -51.93 -0.42 1.19 16 24 C -0.13 -1.67 6.26 -25.01 -0.16 -1.82 16 25 C -0.13 -1.42 6.25 -25.02 -0.16 -1.57 16 26 C 0.07 0.78 4.69 -25.45 -0.12 0.66 16 27 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 28 C 0.03 0.34 5.10 -3.36 -0.02 0.32 16 29 O -0.37 -5.30 11.23 -35.23 -0.40 -5.70 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 32 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 33 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.40 7.02 -51.93 -0.36 1.03 16 36 H 0.05 0.75 7.79 -51.93 -0.40 0.34 16 37 H 0.41 5.01 8.65 -34.46 -0.30 4.71 16 38 H 0.09 1.48 7.75 -51.93 -0.40 1.08 16 39 H 0.09 1.46 6.04 -51.93 -0.31 1.14 16 40 H 0.04 0.44 8.05 -51.92 -0.42 0.03 16 41 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.11 1.74 6.34 -51.93 -0.33 1.41 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.09 1.19 7.87 -51.93 -0.41 0.78 16 46 H 0.08 0.87 7.85 -51.93 -0.41 0.46 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.04 0.47 8.10 -51.93 -0.42 0.05 16 49 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 387.14 15.07 5.83 5.83 Total: -1.00 -29.45 387.14 -11.30 -40.75 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -8.16 Total: 8.49 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -0.27 Total: -4.65 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: -0.72 Total: -67.39 kcal Atomic # 8 Polarization: -47.42 SS G_CDS: -2.30 Total: -49.72 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Atomic # 16 Polarization: 53.19 SS G_CDS: -0.66 Total: 52.53 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.45 -11.30 -40.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451883277.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.054 kcal (2) G-P(sol) polarization free energy of solvation -29.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds