Wall clock time and date at job start Wed Apr 1 2020 05:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46811 * 2 1 4 4 C 1.53002 * 109.47126 * 119.99920 * 2 1 3 5 5 N 1.46497 * 109.47110 * 176.04447 * 4 2 1 6 6 C 1.45648 * 117.70372 * 275.26288 * 5 4 2 7 7 C 1.52986 * 110.77144 * 158.10082 * 6 5 4 8 8 N 1.47269 * 108.19096 * 46.72278 * 7 6 5 9 9 S 1.65604 * 121.35421 * 118.47215 * 8 7 6 10 10 O 1.42101 * 106.40176 * 150.26231 * 9 8 7 11 11 O 1.42101 * 106.39965 * 17.34077 * 9 8 7 12 12 N 1.65603 * 107.21593 * 263.80199 * 9 8 7 13 13 C 1.46497 * 120.00346 * 275.83437 * 12 9 8 14 14 C 1.46500 * 119.99659 * 95.84247 * 12 9 8 15 15 C 1.50705 * 109.46877 * 261.08224 * 14 12 9 16 16 H 1.07995 * 119.99838 * 357.93303 * 15 14 12 17 17 C 1.37876 * 119.99855 * 177.93077 * 15 14 12 18 18 N 1.31508 * 120.00398 * 0.02562 * 17 15 14 19 19 Si 1.86811 * 119.99779 * 180.27538 * 17 15 14 20 20 H 1.48495 * 109.46875 * 179.72434 * 19 17 15 21 21 H 1.48502 * 109.46910 * 299.72472 * 19 17 15 22 22 H 1.48502 * 109.46965 * 59.72564 * 19 17 15 23 23 C 1.47050 * 117.29286 * 298.75292 * 8 7 6 24 24 H 1.09001 * 109.56816 * 162.30710 * 23 8 7 25 25 C 1.53004 * 109.56379 * 282.65738 * 23 8 7 26 26 C 1.33379 * 117.70274 * 95.24278 * 5 4 2 27 27 O 1.21285 * 118.49215 * 4.31662 * 26 5 4 28 28 H 1.08994 * 109.47349 * 299.99802 * 1 2 3 29 29 H 1.08998 * 109.47173 * 60.00353 * 1 2 3 30 30 H 1.09002 * 109.46914 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47322 * 239.99683 * 2 1 3 32 32 H 1.08998 * 109.47084 * 305.28645 * 3 2 1 33 33 H 1.08993 * 109.47221 * 65.29319 * 3 2 1 34 34 H 1.09001 * 109.46381 * 185.29208 * 3 2 1 35 35 H 1.08999 * 109.46833 * 56.04023 * 4 2 1 36 36 H 1.09005 * 109.46973 * 296.04304 * 4 2 1 37 37 H 1.08994 * 109.21830 * 37.76669 * 6 5 4 38 38 H 1.08993 * 109.18179 * 278.40494 * 6 5 4 39 39 H 1.09004 * 109.72162 * 287.05114 * 7 6 5 40 40 H 1.09002 * 109.72370 * 166.39896 * 7 6 5 41 41 H 1.08998 * 109.47206 * 270.00859 * 13 12 9 42 42 H 1.09005 * 109.47041 * 30.00405 * 13 12 9 43 43 H 1.09000 * 109.47414 * 150.00155 * 13 12 9 44 44 H 1.09000 * 109.47142 * 141.08740 * 14 12 9 45 45 H 1.08996 * 109.47665 * 21.08490 * 14 12 9 46 46 H 0.97006 * 120.00484 * 179.97438 * 18 17 15 47 47 H 1.09005 * 109.47209 * 65.02082 * 25 23 8 48 48 H 1.09000 * 109.47250 * 185.01946 * 25 23 8 49 49 H 1.09005 * 109.47336 * 305.01918 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5019 -0.8043 1.2026 6 6 4.0940 -1.9101 0.4623 7 6 5.5299 -1.5801 0.0503 8 7 6.2280 -1.0241 1.2218 9 16 7.5552 -1.7733 1.8698 10 8 8.3578 -0.7474 2.4377 11 8 8.0312 -2.6738 0.8789 12 7 7.0246 -2.7048 3.1320 13 6 6.8338 -2.1055 4.4551 14 6 6.7463 -4.1282 2.9255 15 6 5.2647 -4.3278 2.7352 16 1 4.5936 -3.4840 2.7983 17 6 4.7660 -5.5877 2.4805 18 7 5.5830 -6.6154 2.4041 19 14 2.9302 -5.8340 2.2369 20 1 2.6541 -7.2689 1.9725 21 1 2.2069 -5.4082 3.4620 22 1 2.4706 -5.0205 1.0826 23 6 5.6950 0.2200 1.7966 24 1 6.0831 0.3511 2.8067 25 6 6.1134 1.4069 0.9264 26 6 4.1972 0.1383 1.8406 27 8 3.5914 0.9649 2.4892 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6014 1.9829 -0.8388 33 1 1.7561 1.9282 0.9335 34 1 3.1259 1.4439 -0.0948 35 1 1.6199 -1.7264 1.2854 36 1 1.7357 -0.1680 2.1379 37 1 3.4998 -2.1029 -0.4309 38 1 4.0968 -2.8008 1.0905 39 1 5.5219 -0.8461 -0.7555 40 1 6.0348 -2.4870 -0.2825 41 1 7.7593 -2.1823 5.0257 42 1 6.5622 -1.0558 4.3428 43 1 6.0377 -2.6324 4.9813 44 1 7.0802 -4.6936 3.7955 45 1 7.2767 -4.4775 2.0397 46 1 5.2321 -7.5019 2.2253 47 1 5.6463 1.3206 -0.0547 48 1 5.7943 2.3352 1.4002 49 1 7.1976 1.4105 0.8136 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494286110.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:30 Heat of formation + Delta-G solvation = -107.549363 kcal Electronic energy + Delta-G solvation = -32325.227884 eV Core-core repulsion = 28221.328270 eV Total energy + Delta-G solvation = -4103.899614 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.61658 -36.91055 -36.73428 -36.50699 -35.56998 -35.34173 -33.85970 -32.58193 -31.05825 -28.47070 -27.82797 -27.21709 -26.58858 -25.20496 -23.74215 -23.34428 -22.28305 -20.23759 -19.27634 -17.93130 -17.53859 -17.30880 -16.90522 -16.51482 -16.09217 -15.79366 -15.43029 -14.84487 -14.57287 -14.41267 -14.00355 -13.85032 -13.52295 -13.42736 -13.31810 -12.89397 -12.79963 -12.47445 -12.37323 -12.26051 -12.24269 -12.20156 -11.85031 -11.82679 -11.76827 -11.63312 -11.43611 -11.29039 -11.21715 -11.16946 -11.03992 -10.99545 -10.83614 -10.68849 -10.61426 -10.25610 -9.85576 -9.80154 -8.88671 -8.59283 -8.45651 -8.11041 -6.20124 -4.26954 1.06487 2.71701 3.01491 3.14294 3.22379 3.23844 3.30868 3.97894 4.25836 4.48133 4.69158 4.74467 4.83632 4.87825 4.98366 5.06968 5.13071 5.15848 5.24402 5.39182 5.46217 5.51330 5.55786 5.59721 5.61624 5.68282 5.79299 5.82118 5.84280 5.88008 5.99454 6.02058 6.02553 6.07328 6.19218 6.23397 6.30204 6.34163 6.40686 6.50905 6.68021 7.25829 7.33520 7.54278 7.59031 7.76302 8.07062 8.26592 8.77370 9.38285 10.87797 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009134 B = 0.006526 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3064.834867 B = 4289.687348 C = 6440.572154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 C -0.138 4.138 4 C 0.105 3.895 5 N -0.588 5.588 6 C 0.082 3.918 7 C 0.115 3.885 8 N -1.006 6.006 9 S 2.784 3.216 10 O -0.991 6.991 11 O -0.970 6.970 12 N -0.994 5.994 13 C 0.106 3.894 14 C 0.243 3.757 15 C -0.540 4.540 16 H 0.064 0.936 17 C 0.067 3.933 18 N -0.886 5.886 19 Si 0.888 3.112 20 H -0.286 1.286 21 H -0.277 1.277 22 H -0.274 1.274 23 C 0.145 3.855 24 H 0.116 0.884 25 C -0.151 4.151 26 C 0.521 3.479 27 O -0.552 6.552 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.117 0.883 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.075 0.925 44 H 0.036 0.964 45 H 0.055 0.945 46 H 0.266 0.734 47 H 0.061 0.939 48 H 0.075 0.925 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.271 11.963 -5.044 14.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.130 4.130 3 C -0.195 4.195 4 C -0.018 4.018 5 N -0.318 5.318 6 C -0.042 4.042 7 C -0.011 4.011 8 N -0.845 5.845 9 S 2.794 3.206 10 O -0.975 6.975 11 O -0.954 6.954 12 N -0.837 5.837 13 C -0.041 4.041 14 C 0.121 3.879 15 C -0.579 4.579 16 H 0.082 0.918 17 C -0.137 4.137 18 N -0.524 5.524 19 Si 0.715 3.285 20 H -0.212 1.212 21 H -0.202 1.202 22 H -0.199 1.199 23 C 0.036 3.964 24 H 0.134 0.866 25 C -0.210 4.210 26 C 0.308 3.692 27 O -0.430 6.430 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.121 0.879 39 H 0.091 0.909 40 H 0.135 0.865 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.094 0.906 44 H 0.054 0.946 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.094 0.906 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.616 12.228 -5.025 14.003 hybrid contribution -1.540 -0.531 -0.012 1.629 sum -6.155 11.697 -5.036 14.145 Atomic orbital electron populations 1.21757 0.94684 1.01794 1.01889 1.21471 0.95862 0.97117 0.98555 1.21773 1.00734 0.95396 1.01632 1.21684 0.79791 1.01149 0.99132 1.47084 1.06761 1.26483 1.51499 1.22147 0.93944 0.90524 0.97575 1.21676 0.91743 1.00635 0.87073 1.58718 1.49682 1.34318 1.41733 1.01915 0.73166 0.72391 0.73172 1.93557 1.65887 1.59009 1.79083 1.93578 1.78406 1.64223 1.59175 1.57664 1.83206 1.21945 1.20859 1.21245 1.01475 0.96369 0.84982 1.19248 0.96587 0.73201 0.98817 1.21488 0.92567 0.93740 1.50114 0.91793 1.24935 0.97726 0.95900 0.95100 1.69911 1.34705 0.99758 1.47998 0.86741 0.85530 0.77431 0.78780 1.21155 1.20222 1.19903 1.20930 0.90329 0.85603 0.99575 0.86618 1.22029 1.02763 0.96585 0.99662 1.19963 0.89890 0.80788 0.78562 1.90685 1.69910 1.40319 1.42084 0.92481 0.92593 0.92596 0.91220 0.93437 0.92013 0.93182 0.90680 0.89022 0.90172 0.87882 0.90896 0.86478 0.93426 0.93385 0.90598 0.94582 0.92699 0.92429 0.92035 0.90596 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.19 37.16 0.34 -0.98 16 2 C -0.11 -1.20 3.11 -90.62 -0.28 -1.48 16 3 C -0.14 -1.57 8.00 37.16 0.30 -1.27 16 4 C 0.11 1.38 4.82 -4.04 -0.02 1.36 16 5 N -0.59 -8.51 2.62 -175.05 -0.46 -8.97 16 6 C 0.08 1.17 6.51 -4.51 -0.03 1.14 16 7 C 0.11 1.62 6.44 -3.63 -0.02 1.60 16 8 N -1.01 -15.94 3.01 -107.90 -0.32 -16.27 16 9 S 2.78 52.88 6.05 -107.50 -0.65 52.23 16 10 O -0.99 -19.54 16.62 -57.17 -0.95 -20.49 16 11 O -0.97 -20.94 15.11 -57.17 -0.86 -21.80 16 12 N -0.99 -19.82 3.24 -123.05 -0.40 -20.22 16 13 C 0.11 1.81 10.29 59.85 0.62 2.42 16 14 C 0.24 5.74 5.43 -5.19 -0.03 5.71 16 15 C -0.54 -13.09 8.51 -34.44 -0.29 -13.38 16 16 H 0.06 1.50 6.40 -52.49 -0.34 1.16 16 17 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -24.06 13.29 55.43 0.74 -23.32 16 19 Si 0.89 19.34 29.54 -169.99 -5.02 14.32 16 20 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 C 0.15 2.14 2.94 -69.09 -0.20 1.94 16 24 H 0.12 1.73 6.69 -51.93 -0.35 1.38 16 25 C -0.15 -1.85 9.34 37.16 0.35 -1.51 16 26 C 0.52 8.10 5.41 -11.91 -0.06 8.04 16 27 O -0.55 -9.57 15.00 5.55 0.08 -9.49 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.73 7.79 -51.93 -0.40 0.33 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.78 7.81 -51.93 -0.41 0.37 16 34 H 0.05 0.62 6.93 -51.93 -0.36 0.26 16 35 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 36 H 0.09 1.31 6.94 -51.93 -0.36 0.95 16 37 H 0.08 0.95 7.71 -51.93 -0.40 0.55 16 38 H 0.10 1.80 5.69 -51.93 -0.30 1.50 16 39 H 0.07 0.83 7.67 -51.93 -0.40 0.43 16 40 H 0.12 1.78 6.92 -51.93 -0.36 1.42 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.73 6.95 -51.93 -0.36 0.37 16 43 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 44 H 0.04 0.90 8.13 -51.93 -0.42 0.48 16 45 H 0.06 1.42 6.80 -51.93 -0.35 1.07 16 46 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 47 H 0.06 0.68 7.70 -51.93 -0.40 0.28 16 48 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 392.78 15.07 5.92 5.92 Total: -1.00 -30.14 392.78 -9.50 -39.64 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -8.13 Total: 3.25 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 0.56 Total: 5.19 kcal Atomic # 7 Polarization: -68.33 SS G_CDS: -0.45 Total: -68.78 kcal Atomic # 8 Polarization: -50.05 SS G_CDS: -1.73 Total: -51.78 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.32 kcal Atomic # 16 Polarization: 52.88 SS G_CDS: -0.65 Total: 52.23 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.14 -9.50 -39.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494286110.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.905 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds