Wall clock time and date at job start Wed Apr 1 2020 05:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.47454 * 2 1 4 4 C 1.50696 * 109.47336 * 119.99857 * 2 1 3 5 5 H 1.08003 * 120.00278 * 95.27838 * 4 2 1 6 6 C 1.37880 * 120.00083 * 275.27650 * 4 2 1 7 7 N 1.31514 * 120.00052 * 354.78825 * 6 4 2 8 8 Si 1.86803 * 119.99987 * 174.78697 * 6 4 2 9 9 H 1.48505 * 109.46926 * 60.00293 * 8 6 4 10 10 H 1.48496 * 109.47235 * 299.99938 * 8 6 4 11 11 H 1.48505 * 109.47008 * 179.97438 * 8 6 4 12 12 N 1.46508 * 109.47246 * 239.99963 * 2 1 3 13 13 C 1.46495 * 119.99734 * 299.99890 * 12 2 1 14 14 S 1.65597 * 119.99971 * 119.99821 * 12 2 1 15 15 O 1.42105 * 106.40037 * 203.54257 * 14 12 2 16 16 O 1.42100 * 106.40222 * 336.46030 * 14 12 2 17 17 N 1.65599 * 107.21876 * 90.00060 * 14 12 2 18 18 C 1.46500 * 119.99743 * 65.00174 * 17 14 12 19 19 H 1.08996 * 110.43923 * 24.29621 * 18 17 14 20 20 C 1.54628 * 110.48823 * 146.84224 * 18 17 14 21 21 C 1.54476 * 101.76736 * 93.87452 * 20 18 17 22 22 N 1.46765 * 105.47525 * 25.41882 * 21 20 18 23 23 C 1.46494 * 124.35380 * 162.98007 * 22 21 20 24 24 C 1.53001 * 109.47241 * 59.99870 * 23 22 21 25 25 C 1.52992 * 109.47372 * 180.02562 * 23 22 21 26 26 C 1.53004 * 109.47089 * 300.00349 * 23 22 21 27 27 C 1.34750 * 111.34950 * 343.01654 * 22 21 20 28 28 O 1.21277 * 125.12015 * 180.38571 * 27 22 21 29 29 H 1.09001 * 109.47161 * 295.07752 * 1 2 3 30 30 H 1.09002 * 109.47694 * 55.08127 * 1 2 3 31 31 H 1.09002 * 109.47245 * 175.07968 * 1 2 3 32 32 H 0.97000 * 119.99528 * 5.12106 * 7 6 4 33 33 H 1.09004 * 109.47325 * 89.99536 * 13 12 2 34 34 H 1.09001 * 109.46976 * 209.99724 * 13 12 2 35 35 H 1.09006 * 109.47200 * 330.00115 * 13 12 2 36 36 H 0.96996 * 119.99895 * 245.00035 * 17 14 12 37 37 H 1.09000 * 110.96779 * 211.99909 * 20 18 17 38 38 H 1.09002 * 110.96617 * 335.72045 * 20 18 17 39 39 H 1.08997 * 110.24555 * 144.41670 * 21 20 18 40 40 H 1.09002 * 110.24927 * 266.33143 * 21 20 18 41 41 H 1.09001 * 109.46861 * 59.99631 * 24 23 22 42 42 H 1.08998 * 109.47226 * 179.97438 * 24 23 22 43 43 H 1.09004 * 109.47189 * 300.00646 * 24 23 22 44 44 H 1.08999 * 109.47477 * 59.99854 * 25 23 22 45 45 H 1.08998 * 109.47424 * 180.02562 * 25 23 22 46 46 H 1.09002 * 109.47543 * 300.00249 * 25 23 22 47 47 H 1.09000 * 109.47415 * 59.99377 * 26 23 22 48 48 H 1.08998 * 109.47052 * 180.02562 * 26 23 22 49 49 H 1.08999 * 109.46641 * 299.99460 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.2934 -1.7572 1.1809 6 6 2.1586 -0.0239 2.4195 7 7 1.9393 1.2723 2.4570 8 14 2.6411 -0.9350 3.9773 9 1 3.9696 -1.5710 3.7873 10 1 1.6292 -1.9809 4.2726 11 1 2.7089 0.0228 5.1101 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 16 2.9703 0.1142 -2.2863 15 8 2.8226 -0.5646 -3.5259 16 8 2.6902 1.4972 -2.1193 17 7 4.5437 -0.1042 -1.8181 18 6 5.1357 -1.4440 -1.8416 19 1 4.6119 -2.0791 -2.5561 20 6 6.6403 -1.3649 -2.1893 21 6 7.2863 -1.3293 -0.7866 22 7 6.3237 -1.9873 0.1047 23 6 6.6479 -2.4988 1.4386 24 6 7.1462 -1.3502 2.3180 25 6 5.3967 -3.1164 2.0661 26 6 7.7399 -3.5645 1.3246 27 6 5.1029 -2.0616 -0.4609 28 8 4.1219 -2.5503 0.0584 29 1 -0.3633 0.4356 0.9308 30 1 -0.3634 0.5882 -0.8426 31 1 -0.3634 -1.0239 -0.0881 32 1 1.6171 1.7327 1.6664 33 1 0.7375 -2.1445 -1.9992 34 1 2.4628 -2.5819 -1.9863 35 1 1.5295 -2.5968 -0.4707 36 1 5.0732 0.6550 -1.5282 37 1 6.9594 -2.2475 -2.7436 38 1 6.8646 -0.4549 -2.7459 39 1 8.2296 -1.8754 -0.7918 40 1 7.4496 -0.2984 -0.4725 41 1 6.3684 -0.5909 2.3992 42 1 7.3871 -1.7307 3.3106 43 1 8.0378 -0.9105 1.8708 44 1 5.0421 -3.9348 1.4395 45 1 5.6379 -3.4966 3.0587 46 1 4.6185 -2.3575 2.1473 47 1 8.6314 -3.1249 0.8773 48 1 7.9808 -3.9454 2.3170 49 1 7.3848 -4.3827 0.6981 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564913502.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:09 Heat of formation + Delta-G solvation = -101.100837 kcal Electronic energy + Delta-G solvation = -32848.198718 eV Core-core repulsion = 28744.578733 eV Total energy + Delta-G solvation = -4103.619984 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.58361 -36.80259 -36.52887 -36.22893 -36.06834 -35.29025 -33.09433 -32.53845 -29.33122 -29.02257 -27.34215 -27.26885 -26.38817 -25.46807 -24.56473 -22.19128 -21.12533 -20.88642 -19.18004 -18.39808 -17.40585 -17.06884 -16.67890 -16.58852 -15.98226 -15.34731 -14.92162 -14.60113 -14.16261 -14.11268 -13.76873 -13.64681 -13.56017 -13.32475 -12.99062 -12.91235 -12.87247 -12.42589 -12.10022 -11.94376 -11.86675 -11.75987 -11.69009 -11.59740 -11.55042 -11.40296 -11.28978 -11.24100 -11.12277 -11.10197 -11.01747 -10.86542 -10.53894 -10.44063 -10.15041 -9.96435 -9.91287 -8.90652 -8.62875 -8.38955 -8.28042 -7.69829 -6.26869 -3.97015 1.21231 2.83280 3.11585 3.42481 3.46220 3.61435 3.64957 4.11457 4.33581 4.45028 4.56421 4.76232 4.83645 4.97912 5.01499 5.06231 5.16403 5.29486 5.41134 5.42832 5.54994 5.64774 5.65971 5.71527 5.78296 5.79882 5.92156 5.99874 6.05005 6.06585 6.23199 6.29233 6.38170 6.47638 6.60143 6.64805 6.72803 6.84274 6.92386 7.00965 7.08309 7.25178 7.42827 7.49096 7.75204 8.22554 8.51547 8.76095 8.97485 9.71784 11.09221 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009242 B = 0.007571 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3029.005930 B = 3697.269038 C = 5742.404000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.251 3.749 3 H 0.055 0.945 4 C -0.580 4.580 5 H 0.077 0.923 6 C 0.020 3.980 7 N -0.917 5.917 8 Si 1.057 2.943 9 H -0.276 1.276 10 H -0.291 1.291 11 H -0.290 1.290 12 N -0.974 5.974 13 C 0.119 3.881 14 S 2.777 3.223 15 O -0.998 6.998 16 O -0.982 6.982 17 N -1.107 6.107 18 C 0.123 3.877 19 H 0.116 0.884 20 C -0.137 4.137 21 C 0.104 3.896 22 N -0.613 5.613 23 C 0.179 3.821 24 C -0.158 4.158 25 C -0.151 4.151 26 C -0.154 4.154 27 C 0.499 3.501 28 O -0.468 6.468 29 H 0.056 0.944 30 H 0.020 0.980 31 H 0.043 0.957 32 H 0.269 0.731 33 H 0.033 0.967 34 H 0.046 0.954 35 H 0.083 0.917 36 H 0.414 0.586 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.053 0.947 44 H 0.065 0.935 45 H 0.049 0.951 46 H 0.093 0.907 47 H 0.054 0.946 48 H 0.065 0.935 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.529 -8.026 -5.560 16.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.147 3.853 3 H 0.072 0.928 4 C -0.620 4.620 5 H 0.095 0.905 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.886 3.114 9 H -0.203 1.203 10 H -0.217 1.217 11 H -0.216 1.216 12 N -0.816 5.816 13 C -0.027 4.027 14 S 2.786 3.214 15 O -0.982 6.982 16 O -0.967 6.967 17 N -0.865 5.865 18 C 0.011 3.989 19 H 0.134 0.866 20 C -0.176 4.176 21 C -0.019 4.019 22 N -0.350 5.350 23 C 0.096 3.904 24 C -0.216 4.216 25 C -0.208 4.208 26 C -0.212 4.212 27 C 0.283 3.717 28 O -0.338 6.338 29 H 0.075 0.925 30 H 0.039 0.961 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.247 0.753 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.068 0.932 46 H 0.111 0.889 47 H 0.073 0.927 48 H 0.084 0.916 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.941 -7.783 -4.437 15.740 hybrid contribution 0.187 0.013 -1.038 1.055 sum 13.128 -7.770 -5.475 16.208 Atomic orbital electron populations 1.22116 0.98894 0.99730 0.99296 1.18855 0.90784 0.93183 0.82452 0.92756 1.22321 1.46245 0.99661 0.93793 0.90511 1.25668 0.95307 0.95947 1.01489 1.70791 1.43003 1.08212 1.33413 0.83810 0.76936 0.74952 0.75684 1.20274 1.21743 1.21559 1.57589 1.63813 1.21282 1.38937 1.21103 0.97871 0.81856 1.01896 1.02027 0.72650 0.73194 0.73532 1.93539 1.85835 1.76358 1.42424 1.93591 1.83422 1.32618 1.87027 1.56015 1.32883 1.12880 1.84706 1.21371 0.96113 0.85091 0.96306 0.86595 1.22895 0.93474 1.04531 0.96736 1.21941 0.92999 0.98004 0.89001 1.48348 1.10666 1.59770 1.16237 1.20364 0.96035 0.93053 0.80951 1.22193 1.01402 0.98765 0.99261 1.22330 0.96788 1.02861 0.98857 1.22179 0.98172 0.98659 1.02219 1.21194 0.82845 0.79779 0.87932 1.90827 1.33552 1.42667 1.66731 0.92549 0.96139 0.93774 0.91915 0.94879 0.93509 0.89875 0.75303 0.89016 0.88556 0.90637 0.91429 0.91391 0.91721 0.92819 0.91625 0.93201 0.88859 0.92691 0.91629 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.25 37.15 0.34 -2.90 16 2 C 0.25 6.14 2.36 -69.08 -0.16 5.98 16 3 H 0.05 1.49 5.43 -51.93 -0.28 1.20 16 4 C -0.58 -15.04 7.77 -34.44 -0.27 -15.31 16 5 H 0.08 2.01 4.97 -52.48 -0.26 1.75 16 6 C 0.02 0.55 5.45 -17.82 -0.10 0.45 16 7 N -0.92 -26.86 13.63 55.43 0.76 -26.10 16 8 Si 1.06 24.52 29.39 -169.99 -5.00 19.53 16 9 H -0.28 -5.86 5.48 56.52 0.31 -5.55 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 N -0.97 -20.76 3.12 -115.85 -0.36 -21.12 16 13 C 0.12 2.28 7.74 59.84 0.46 2.74 16 14 S 2.78 55.54 6.08 -107.50 -0.65 54.89 16 15 O -1.00 -20.54 16.59 -57.17 -0.95 -21.48 16 16 O -0.98 -22.76 16.70 -57.17 -0.95 -23.71 16 17 N -1.11 -17.71 5.58 -4.90 -0.03 -17.74 16 18 C 0.12 1.71 3.60 -67.94 -0.24 1.47 16 19 H 0.12 1.60 7.12 -51.93 -0.37 1.23 16 20 C -0.14 -1.27 6.82 -25.10 -0.17 -1.44 16 21 C 0.10 1.01 6.60 -3.12 -0.02 0.99 16 22 N -0.61 -8.18 2.77 -157.49 -0.44 -8.62 16 23 C 0.18 2.36 1.20 -131.82 -0.16 2.21 16 24 C -0.16 -2.03 8.54 37.16 0.32 -1.71 16 25 C -0.15 -2.43 6.85 37.15 0.25 -2.17 16 26 C -0.15 -1.54 8.49 37.16 0.32 -1.23 16 27 C 0.50 8.03 7.49 -10.71 -0.08 7.95 16 28 O -0.47 -9.02 10.22 5.56 0.06 -8.97 16 29 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.04 0.95 7.51 -51.93 -0.39 0.56 16 32 H 0.27 8.00 6.65 -40.82 -0.27 7.72 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.81 7.19 -51.93 -0.37 0.44 16 35 H 0.08 1.69 6.52 -51.93 -0.34 1.35 16 36 H 0.41 5.96 8.86 -34.47 -0.31 5.65 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.10 0.76 8.08 -51.93 -0.42 0.34 16 39 H 0.08 0.56 7.12 -51.93 -0.37 0.19 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.05 0.58 7.90 -51.93 -0.41 0.17 16 44 H 0.06 1.07 7.08 -51.93 -0.37 0.70 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.09 1.88 4.99 -51.93 -0.26 1.62 16 47 H 0.05 0.47 7.21 -51.93 -0.37 0.09 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 383.98 15.07 5.79 5.79 Total: -1.00 -33.37 383.98 -9.19 -42.57 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -7.91 Total: 7.95 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 0.49 Total: -2.98 kcal Atomic # 7 Polarization: -73.51 SS G_CDS: -0.07 Total: -73.58 kcal Atomic # 8 Polarization: -52.32 SS G_CDS: -1.85 Total: -54.16 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -5.00 Total: 19.53 kcal Atomic # 16 Polarization: 55.54 SS G_CDS: -0.65 Total: 54.89 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.37 -9.19 -42.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564913502.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.532 kcal (2) G-P(sol) polarization free energy of solvation -33.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds