Wall clock time and date at job start Wed Apr 1 2020 05:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.47454 * 2 1 4 4 C 1.50696 * 109.47336 * 119.99857 * 2 1 3 5 5 H 1.08003 * 120.00278 * 95.27838 * 4 2 1 6 6 C 1.37880 * 120.00083 * 275.27650 * 4 2 1 7 7 N 1.31514 * 120.00052 * 354.78825 * 6 4 2 8 8 Si 1.86803 * 119.99987 * 174.78697 * 6 4 2 9 9 H 1.48505 * 109.46926 * 60.00293 * 8 6 4 10 10 H 1.48496 * 109.47235 * 299.99938 * 8 6 4 11 11 H 1.48505 * 109.47008 * 179.97438 * 8 6 4 12 12 N 1.46508 * 109.47246 * 239.99963 * 2 1 3 13 13 C 1.46495 * 119.99734 * 299.99890 * 12 2 1 14 14 S 1.65597 * 119.99971 * 119.99821 * 12 2 1 15 15 O 1.42105 * 106.40037 * 203.54257 * 14 12 2 16 16 O 1.42100 * 106.40222 * 336.46030 * 14 12 2 17 17 N 1.65599 * 107.21876 * 90.00060 * 14 12 2 18 18 C 1.46500 * 119.99743 * 65.00174 * 17 14 12 19 19 H 1.08996 * 110.43923 * 24.29621 * 18 17 14 20 20 C 1.54628 * 110.48823 * 146.84224 * 18 17 14 21 21 C 1.54476 * 101.76736 * 93.87452 * 20 18 17 22 22 N 1.46765 * 105.47525 * 25.41882 * 21 20 18 23 23 C 1.46494 * 124.35380 * 162.98007 * 22 21 20 24 24 C 1.53001 * 109.47241 * 59.99870 * 23 22 21 25 25 C 1.52992 * 109.47372 * 180.02562 * 23 22 21 26 26 C 1.53004 * 109.47089 * 300.00349 * 23 22 21 27 27 C 1.34750 * 111.34950 * 343.01654 * 22 21 20 28 28 O 1.21277 * 125.12015 * 180.38571 * 27 22 21 29 29 H 1.09001 * 109.47161 * 295.07752 * 1 2 3 30 30 H 1.09002 * 109.47694 * 55.08127 * 1 2 3 31 31 H 1.09002 * 109.47245 * 175.07968 * 1 2 3 32 32 H 0.97000 * 119.99528 * 5.12106 * 7 6 4 33 33 H 1.09004 * 109.47325 * 89.99536 * 13 12 2 34 34 H 1.09001 * 109.46976 * 209.99724 * 13 12 2 35 35 H 1.09006 * 109.47200 * 330.00115 * 13 12 2 36 36 H 0.96996 * 119.99895 * 245.00035 * 17 14 12 37 37 H 1.09000 * 110.96779 * 211.99909 * 20 18 17 38 38 H 1.09002 * 110.96617 * 335.72045 * 20 18 17 39 39 H 1.08997 * 110.24555 * 144.41670 * 21 20 18 40 40 H 1.09002 * 110.24927 * 266.33143 * 21 20 18 41 41 H 1.09001 * 109.46861 * 59.99631 * 24 23 22 42 42 H 1.08998 * 109.47226 * 179.97438 * 24 23 22 43 43 H 1.09004 * 109.47189 * 300.00646 * 24 23 22 44 44 H 1.08999 * 109.47477 * 59.99854 * 25 23 22 45 45 H 1.08998 * 109.47424 * 180.02562 * 25 23 22 46 46 H 1.09002 * 109.47543 * 300.00249 * 25 23 22 47 47 H 1.09000 * 109.47415 * 59.99377 * 26 23 22 48 48 H 1.08998 * 109.47052 * 180.02562 * 26 23 22 49 49 H 1.08999 * 109.46641 * 299.99460 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.2934 -1.7572 1.1809 6 6 2.1586 -0.0239 2.4195 7 7 1.9393 1.2723 2.4570 8 14 2.6411 -0.9350 3.9773 9 1 3.9696 -1.5710 3.7873 10 1 1.6292 -1.9809 4.2726 11 1 2.7089 0.0228 5.1101 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 16 2.9703 0.1142 -2.2863 15 8 2.8226 -0.5646 -3.5259 16 8 2.6902 1.4972 -2.1193 17 7 4.5437 -0.1042 -1.8181 18 6 5.1357 -1.4440 -1.8416 19 1 4.6119 -2.0791 -2.5561 20 6 6.6403 -1.3649 -2.1893 21 6 7.2863 -1.3293 -0.7866 22 7 6.3237 -1.9873 0.1047 23 6 6.6479 -2.4988 1.4386 24 6 7.1462 -1.3502 2.3180 25 6 5.3967 -3.1164 2.0661 26 6 7.7399 -3.5645 1.3246 27 6 5.1029 -2.0616 -0.4609 28 8 4.1219 -2.5503 0.0584 29 1 -0.3633 0.4356 0.9308 30 1 -0.3634 0.5882 -0.8426 31 1 -0.3634 -1.0239 -0.0881 32 1 1.6171 1.7327 1.6664 33 1 0.7375 -2.1445 -1.9992 34 1 2.4628 -2.5819 -1.9863 35 1 1.5295 -2.5968 -0.4707 36 1 5.0732 0.6550 -1.5282 37 1 6.9594 -2.2475 -2.7436 38 1 6.8646 -0.4549 -2.7459 39 1 8.2296 -1.8754 -0.7918 40 1 7.4496 -0.2984 -0.4725 41 1 6.3684 -0.5909 2.3992 42 1 7.3871 -1.7307 3.3106 43 1 8.0378 -0.9105 1.8708 44 1 5.0421 -3.9348 1.4395 45 1 5.6379 -3.4966 3.0587 46 1 4.6185 -2.3575 2.1473 47 1 8.6314 -3.1249 0.8773 48 1 7.9808 -3.9454 2.3170 49 1 7.3848 -4.3827 0.6981 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564913502.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:08 Heat of formation + Delta-G solvation = -126.339128 kcal Electronic energy + Delta-G solvation = -32849.293132 eV Core-core repulsion = 28744.578733 eV Total energy + Delta-G solvation = -4104.714399 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.64842 -38.45483 -38.05944 -37.57273 -37.33982 -36.99644 -34.52873 -34.26385 -30.92713 -30.29067 -28.45433 -28.17032 -27.47634 -27.13439 -26.63229 -23.11149 -22.79170 -22.18189 -20.72717 -19.50268 -19.03462 -18.73006 -18.39671 -17.98830 -17.09629 -16.78217 -16.16972 -15.83558 -15.67270 -15.45349 -15.18753 -15.05073 -15.00709 -14.68300 -14.60237 -14.06447 -13.99153 -13.61629 -13.56660 -13.44050 -13.30958 -13.22293 -13.09006 -13.04711 -12.98762 -12.97017 -12.74428 -12.72998 -12.43831 -12.32869 -12.26224 -12.14668 -12.07889 -11.93833 -11.84027 -11.66174 -11.41082 -10.81463 -10.35415 -9.85432 -9.53805 -9.40737 -8.44273 -6.13752 -0.37935 1.51374 1.52986 1.59647 1.77535 2.10415 2.18092 2.55569 2.61710 3.29202 3.32260 3.44526 3.49468 3.91566 3.97712 4.02854 4.04533 4.15563 4.20664 4.28089 4.52479 4.64435 4.68687 4.72887 4.74114 4.75245 4.76440 4.85649 4.87268 4.92323 4.98709 5.01007 5.03294 5.03753 5.17368 5.19826 5.21819 5.33651 5.43354 5.51737 5.56386 5.78549 5.91387 6.00805 6.19404 6.36132 6.55343 6.78081 7.45957 7.61866 8.91630 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009242 B = 0.007571 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3029.005930 B = 3697.269038 C = 5742.404000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.254 3.746 3 H 0.024 0.976 4 C -0.564 4.564 5 H 0.074 0.926 6 C -0.026 4.026 7 N -0.948 5.948 8 Si 1.092 2.908 9 H -0.252 1.252 10 H -0.283 1.283 11 H -0.299 1.299 12 N -0.982 5.982 13 C 0.121 3.879 14 S 2.793 3.207 15 O -1.001 7.001 16 O -1.018 7.018 17 N -1.098 6.098 18 C 0.113 3.887 19 H 0.117 0.883 20 C -0.122 4.122 21 C 0.097 3.903 22 N -0.611 5.611 23 C 0.173 3.827 24 C -0.154 4.154 25 C -0.146 4.146 26 C -0.143 4.143 27 C 0.484 3.516 28 O -0.512 6.512 29 H 0.037 0.963 30 H 0.031 0.969 31 H 0.057 0.943 32 H 0.254 0.746 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.422 0.578 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.071 0.929 41 H 0.027 0.973 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.055 0.945 45 H 0.061 0.939 46 H 0.048 0.952 47 H 0.079 0.921 48 H 0.076 0.924 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.656 -9.740 -6.598 20.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.150 3.850 3 H 0.042 0.958 4 C -0.604 4.604 5 H 0.093 0.907 6 C -0.224 4.224 7 N -0.588 5.588 8 Si 0.917 3.083 9 H -0.176 1.176 10 H -0.209 1.209 11 H -0.226 1.226 12 N -0.823 5.823 13 C -0.025 4.025 14 S 2.802 3.198 15 O -0.984 6.984 16 O -1.002 7.002 17 N -0.859 5.859 18 C 0.002 3.998 19 H 0.135 0.865 20 C -0.161 4.161 21 C -0.025 4.025 22 N -0.347 5.347 23 C 0.090 3.910 24 C -0.212 4.212 25 C -0.203 4.203 26 C -0.201 4.201 27 C 0.268 3.732 28 O -0.385 6.385 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.257 0.743 37 H 0.139 0.861 38 H 0.134 0.866 39 H 0.129 0.871 40 H 0.089 0.911 41 H 0.046 0.954 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.067 0.933 47 H 0.098 0.902 48 H 0.095 0.905 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.103 -9.513 -5.498 19.494 hybrid contribution -0.738 0.492 -0.795 1.191 sum 15.365 -9.021 -6.293 18.896 Atomic orbital electron populations 1.22004 0.98044 1.00560 0.98801 1.18577 0.91456 0.91704 0.83289 0.95825 1.22441 1.44453 0.99372 0.94139 0.90748 1.26759 0.95359 0.95868 1.04398 1.70911 1.45782 1.09333 1.32784 0.83366 0.78240 0.74142 0.72591 1.17647 1.20898 1.22587 1.57438 1.64913 1.22038 1.37921 1.21157 0.99187 0.80615 1.01523 1.01341 0.73179 0.72035 0.73205 1.93531 1.86333 1.76215 1.42356 1.93543 1.84456 1.34802 1.87421 1.55652 1.31386 1.14483 1.84398 1.21657 0.99414 0.83365 0.95396 0.86549 1.22985 0.89149 1.06947 0.97043 1.22266 0.93471 0.98474 0.88255 1.48496 1.10663 1.59052 1.16537 1.20471 0.95653 0.94058 0.80840 1.22160 1.01011 0.97682 1.00323 1.22199 0.97088 1.01281 0.99768 1.22073 0.97481 0.97334 1.03186 1.21646 0.83179 0.79593 0.88822 1.90797 1.35116 1.44659 1.67896 0.94391 0.95014 0.92427 0.93516 0.93504 0.91807 0.91372 0.74313 0.86089 0.86611 0.87132 0.91089 0.95407 0.90498 0.90218 0.92609 0.92045 0.93323 0.90248 0.90532 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.35 9.25 71.98 0.67 -5.68 16 2 C 0.25 12.85 2.36 44.24 0.10 12.95 16 3 H 0.02 1.36 5.43 -2.39 -0.01 1.35 16 4 C -0.56 -30.12 7.77 25.60 0.20 -29.92 16 5 H 0.07 4.01 4.97 -2.91 -0.01 3.99 16 6 C -0.03 -1.46 5.45 84.66 0.46 -1.00 16 7 N -0.95 -57.82 13.63 21.45 0.29 -57.53 16 8 Si 1.09 50.81 29.39 68.60 2.02 52.82 16 9 H -0.25 -10.59 5.48 99.48 0.55 -10.04 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 12 N -0.98 -42.25 3.12 -520.45 -1.62 -43.87 16 13 C 0.12 4.60 7.74 127.77 0.99 5.59 16 14 S 2.79 111.32 6.08 -56.49 -0.34 110.98 16 15 O -1.00 -40.02 16.59 -128.00 -2.12 -42.14 16 16 O -1.02 -48.02 16.70 -128.00 -2.14 -50.15 16 17 N -1.10 -34.06 5.58 -169.41 -0.94 -35.00 16 18 C 0.11 2.90 3.60 44.99 0.16 3.07 16 19 H 0.12 2.98 7.12 -2.39 -0.02 2.96 16 20 C -0.12 -1.75 6.82 31.65 0.22 -1.54 16 21 C 0.10 1.48 6.60 86.83 0.57 2.05 16 22 N -0.61 -14.92 2.77 -770.57 -2.13 -17.05 16 23 C 0.17 4.18 1.20 3.60 0.00 4.18 16 24 C -0.15 -3.62 8.54 71.98 0.61 -3.01 16 25 C -0.15 -4.61 6.85 71.98 0.49 -4.11 16 26 C -0.14 -2.29 8.49 71.98 0.61 -1.68 16 27 C 0.48 15.05 7.49 87.85 0.66 15.71 16 28 O -0.51 -19.88 10.22 -3.02 -0.03 -19.91 16 29 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 2.51 7.51 -2.39 -0.02 2.49 16 32 H 0.25 15.90 6.65 -92.71 -0.62 15.29 16 33 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.06 2.18 7.19 -2.39 -0.02 2.16 16 35 H 0.07 2.80 6.52 -2.38 -0.02 2.78 16 36 H 0.42 11.76 8.86 -96.75 -0.86 10.90 16 37 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.12 1.28 8.08 -2.39 -0.02 1.26 16 39 H 0.11 0.99 7.12 -2.39 -0.02 0.97 16 40 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.08 1.43 7.90 -2.39 -0.02 1.41 16 44 H 0.05 1.82 7.08 -2.39 -0.02 1.80 16 45 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.05 1.98 4.99 -2.39 -0.01 1.97 16 47 H 0.08 0.91 7.21 -2.39 -0.02 0.89 16 48 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -76.35 383.98 -1.18 -77.53 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.10 Total: 27.72 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 5.75 Total: -3.39 kcal Atomic # 7 Polarization: -149.05 SS G_CDS: -4.41 Total: -153.45 kcal Atomic # 8 Polarization: -107.91 SS G_CDS: -4.29 Total: -112.20 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 2.02 Total: 52.82 kcal Atomic # 16 Polarization: 111.32 SS G_CDS: -0.34 Total: 110.98 kcal Total: -76.35 -1.18 -77.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564913502.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.813 kcal (2) G-P(sol) polarization free energy of solvation -76.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds