Wall clock time and date at job start Wed Apr 1 2020 04:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46978 * 2 1 4 4 N 1.46494 * 109.47535 * 120.00347 * 2 1 3 5 5 S 1.65594 * 120.00162 * 144.99937 * 4 2 1 6 6 O 1.42106 * 104.27838 * 308.93002 * 5 4 2 7 7 O 1.42104 * 104.27857 * 181.07527 * 5 4 2 8 8 C 1.81399 * 104.44971 * 64.99998 * 5 4 2 9 9 C 1.53002 * 109.47327 * 179.97438 * 8 5 4 10 10 N 1.46493 * 109.47548 * 180.02562 * 9 8 5 11 11 C 1.34771 * 120.00314 * 180.02562 * 10 9 8 12 12 O 1.21584 * 120.00312 * 355.02176 * 11 10 9 13 13 N 1.34777 * 120.00147 * 175.01781 * 11 10 9 14 14 C 1.46928 * 120.62990 * 5.22635 * 13 11 10 15 15 C 1.53199 * 108.77480 * 126.36688 * 14 13 11 16 16 C 1.53038 * 109.30912 * 54.63978 * 15 14 13 17 17 C 1.53041 * 109.53781 * 298.62992 * 16 15 14 18 18 H 1.09005 * 109.50089 * 301.41898 * 17 16 15 19 19 C 1.50704 * 109.50070 * 181.35339 * 17 16 15 20 20 H 1.08002 * 119.99176 * 0.02562 * 19 17 16 21 21 C 1.37876 * 120.00247 * 180.02562 * 19 17 16 22 22 N 1.31507 * 119.99989 * 179.97438 * 21 19 17 23 23 Si 1.86801 * 119.99954 * 359.97438 * 21 19 17 24 24 H 1.48494 * 109.47136 * 89.99937 * 23 21 19 25 25 H 1.48501 * 109.47043 * 210.00290 * 23 21 19 26 26 H 1.48505 * 109.47158 * 330.00049 * 23 21 19 27 27 C 1.46929 * 120.63330 * 184.94581 * 13 11 10 28 28 H 1.09007 * 109.47093 * 299.99343 * 1 2 3 29 29 H 1.08994 * 109.47371 * 59.99746 * 1 2 3 30 30 H 1.09004 * 109.46872 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46621 * 240.00563 * 2 1 3 32 32 H 1.08995 * 109.46791 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47277 * 300.00311 * 3 2 1 34 34 H 1.09007 * 109.46672 * 60.00399 * 3 2 1 35 35 H 0.97004 * 119.99916 * 325.00054 * 4 2 1 36 36 H 1.08999 * 109.46841 * 60.00503 * 8 5 4 37 37 H 1.08991 * 109.47198 * 300.00248 * 8 5 4 38 38 H 1.09009 * 109.46857 * 60.00056 * 9 8 5 39 39 H 1.09000 * 109.47415 * 300.00515 * 9 8 5 40 40 H 0.97007 * 119.99863 * 0.02562 * 10 9 8 41 41 H 1.08999 * 109.59113 * 246.15587 * 14 13 11 42 42 H 1.08998 * 109.58822 * 6.58007 * 14 13 11 43 43 H 1.08998 * 109.49155 * 174.58631 * 15 14 13 44 44 H 1.08997 * 109.49765 * 294.68518 * 15 14 13 45 45 H 1.08999 * 109.46342 * 58.65529 * 16 15 14 46 46 H 1.09003 * 109.45501 * 178.61315 * 16 15 14 47 47 H 0.97001 * 119.99895 * 179.97438 * 22 21 19 48 48 H 1.08997 * 109.58219 * 353.42016 * 27 13 11 49 49 H 1.09000 * 109.58348 * 113.84624 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1960 5 16 3.4020 -1.5975 1.1216 6 8 3.1998 -2.4544 0.0061 7 8 3.5467 -2.1244 2.4334 8 6 4.7134 -0.3944 0.7705 9 6 6.0581 -1.1183 0.6774 10 7 7.1173 -0.1466 0.3945 11 6 8.3941 -0.5592 0.2682 12 8 8.6809 -1.7220 0.4780 13 7 9.3531 0.3171 -0.0908 14 6 9.0446 1.7462 -0.2366 15 6 10.0233 2.5522 0.6234 16 6 11.4577 2.1769 0.2443 17 6 11.6867 0.6887 0.5180 18 1 11.5018 0.4798 1.5718 19 6 13.1092 0.3273 0.1757 20 1 13.7830 1.0835 -0.1992 21 6 13.5503 -0.9685 0.3412 22 7 14.7914 -1.2838 0.0420 23 14 12.3848 -2.2760 0.9903 24 1 11.6838 -2.9233 -0.1475 25 1 13.1567 -3.2979 1.7421 26 1 11.3874 -1.6463 1.8926 27 6 10.7283 -0.1375 -0.3377 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.5313 -0.6167 2.0317 36 1 4.7533 0.3436 1.5717 37 1 4.5037 0.1063 -0.1746 38 1 6.0185 -1.8567 -0.1235 39 1 6.2676 -1.6187 1.6228 40 1 6.8997 0.7938 0.2981 41 1 9.1505 2.0382 -1.2815 42 1 8.0242 1.9356 0.0962 43 1 9.8679 3.6170 0.4502 44 1 9.8540 2.3258 1.6761 45 1 11.6186 2.3805 -0.8143 46 1 12.1562 2.7670 0.8377 47 1 15.1018 -2.1954 0.1587 48 1 10.8182 -1.1907 -0.0715 49 1 10.9742 -0.0024 -1.3910 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595489958.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:57 Heat of formation + Delta-G solvation = -98.946057 kcal Electronic energy + Delta-G solvation = -29473.177436 eV Core-core repulsion = 25369.650890 eV Total energy + Delta-G solvation = -4103.526546 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.13312 -37.75032 -37.37499 -37.22113 -36.34384 -35.43064 -33.49047 -32.06667 -31.16222 -30.99913 -30.25768 -27.82549 -25.25587 -25.12992 -23.33185 -22.08919 -22.07322 -20.39818 -19.94182 -19.10515 -18.27129 -17.92140 -16.92811 -16.76715 -16.64002 -16.11101 -15.81451 -15.34614 -14.90425 -14.82406 -14.51418 -14.07535 -14.03208 -13.89069 -13.85254 -13.39958 -13.17217 -12.93751 -12.83730 -12.72481 -12.56046 -12.49823 -12.42731 -12.22413 -12.13359 -12.02474 -11.97323 -11.55698 -11.44101 -11.31747 -11.05126 -10.65070 -10.41157 -10.15625 -10.10687 -9.86218 -9.68937 -9.25254 -9.15900 -9.09106 -8.57742 -8.02797 -6.08720 -4.10774 -0.24984 2.22415 2.81959 3.34640 3.42298 3.44981 3.51270 3.64556 3.71697 3.94354 4.06612 4.15487 4.30543 4.40700 4.45747 4.53889 4.76358 4.85102 5.01134 5.01275 5.11232 5.22810 5.23555 5.24561 5.28192 5.34453 5.42504 5.48451 5.61000 5.65065 5.72577 5.93268 6.06521 6.13020 6.36132 6.37565 6.43959 6.52465 6.56788 6.69823 6.82951 7.09330 7.24757 7.44748 7.73889 8.16263 8.48752 8.83779 8.93790 9.52883 11.02943 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019536 B = 0.002491 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.929757 B =11238.904041 C =12286.607601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.135 3.865 3 C -0.181 4.181 4 N -1.114 6.114 5 S 2.622 3.378 6 O -0.947 6.947 7 O -0.950 6.950 8 C -0.652 4.652 9 C 0.152 3.848 10 N -0.748 5.748 11 C 0.700 3.300 12 O -0.586 6.586 13 N -0.623 5.623 14 C 0.116 3.884 15 C -0.137 4.137 16 C -0.100 4.100 17 C 0.003 3.997 18 H 0.030 0.970 19 C -0.517 4.517 20 H 0.077 0.923 21 C 0.073 3.927 22 N -0.896 5.896 23 Si 0.881 3.119 24 H -0.273 1.273 25 H -0.296 1.296 26 H -0.262 1.262 27 C 0.118 3.882 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.418 0.582 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.396 0.604 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.059 0.941 47 H 0.265 0.735 48 H 0.081 0.919 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.542 9.817 -0.405 32.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.028 3.972 3 C -0.240 4.240 4 N -0.874 5.874 5 S 2.711 3.289 6 O -0.937 6.937 7 O -0.939 6.939 8 C -0.780 4.780 9 C 0.025 3.975 10 N -0.409 5.409 11 C 0.402 3.598 12 O -0.464 6.464 13 N -0.359 5.359 14 C -0.008 4.008 15 C -0.175 4.175 16 C -0.137 4.137 17 C -0.016 4.016 18 H 0.048 0.952 19 C -0.555 4.555 20 H 0.095 0.905 21 C -0.130 4.130 22 N -0.533 5.533 23 Si 0.710 3.290 24 H -0.199 1.199 25 H -0.224 1.224 26 H -0.186 1.186 27 C -0.003 4.003 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.253 0.747 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.233 0.767 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.098 0.902 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -30.015 7.850 -0.352 31.026 hybrid contribution -0.663 0.575 0.514 1.016 sum -30.677 8.425 0.161 31.814 Atomic orbital electron populations 1.22033 0.93551 1.03052 1.02837 1.20890 0.96384 0.92722 0.87183 1.22495 1.01729 0.96338 1.03395 1.55749 1.42803 1.69711 1.19103 1.04727 0.74692 0.74872 0.74563 1.93633 1.83828 1.61412 1.54779 1.93641 1.85652 1.76272 1.38383 1.31105 1.14887 1.19085 1.12903 1.20662 0.82485 0.91128 1.03202 1.45141 1.05682 1.10547 1.79495 1.15937 0.80338 0.85187 0.78377 1.90932 1.81110 1.17038 1.57322 1.47678 1.10306 1.06502 1.71430 1.21572 0.97727 0.81224 1.00284 1.21995 0.97283 0.98447 0.99773 1.21427 0.93233 0.98201 1.00863 1.19432 0.94978 0.91467 0.95770 0.95183 1.20931 0.93653 0.95989 1.44902 0.90482 1.25050 0.95002 0.98575 0.94385 1.69889 1.15772 1.19696 1.47965 0.86970 0.80074 0.81631 0.80288 1.19948 1.22396 1.18640 1.22457 0.76723 1.00605 1.00521 0.91910 0.91021 0.91607 0.88757 0.92133 0.90871 0.91526 0.74705 0.84020 0.84229 0.90170 0.90074 0.76730 0.91443 0.91854 0.91676 0.92025 0.92469 0.92192 0.92507 0.90151 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.51 9.44 37.16 0.35 -0.16 16 2 C 0.14 0.54 3.42 -67.93 -0.23 0.31 16 3 C -0.18 -0.48 9.48 37.16 0.35 -0.13 16 4 N -1.11 -5.53 5.36 -4.89 -0.03 -5.56 16 5 S 2.62 21.56 5.44 -107.50 -0.58 20.97 16 6 O -0.95 -11.07 17.39 -57.54 -1.00 -12.07 16 7 O -0.95 -11.29 18.08 -57.54 -1.04 -12.33 16 8 C -0.65 -4.16 5.33 37.16 0.20 -3.97 16 9 C 0.15 1.75 5.69 -4.04 -0.02 1.72 16 10 N -0.75 -9.75 5.46 -65.23 -0.36 -10.11 16 11 C 0.70 13.24 8.30 -86.92 -0.72 12.52 16 12 O -0.59 -13.90 15.77 5.29 0.08 -13.82 16 13 N -0.62 -11.47 2.98 -178.76 -0.53 -12.00 16 14 C 0.12 1.52 6.39 -3.71 -0.02 1.50 16 15 C -0.14 -1.91 6.08 -26.61 -0.16 -2.08 16 16 C -0.10 -1.83 5.11 -26.69 -0.14 -1.96 16 17 C 0.00 0.08 1.83 -91.87 -0.17 -0.09 16 18 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 19 C -0.52 -14.34 9.15 -34.44 -0.32 -14.66 16 20 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 21 C 0.07 2.13 5.45 -17.82 -0.10 2.03 16 22 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 23 Si 0.88 23.76 24.32 -169.99 -4.13 19.63 16 24 H -0.27 -7.45 6.92 56.52 0.39 -7.06 16 25 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 26 H -0.26 -7.12 6.53 56.52 0.37 -6.75 16 27 C 0.12 2.66 5.10 -3.93 -0.02 2.64 16 28 H 0.06 0.16 8.14 -51.93 -0.42 -0.27 16 29 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.42 7.48 -51.93 -0.39 0.03 16 32 H 0.06 0.13 5.78 -51.93 -0.30 -0.17 16 33 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 34 H 0.07 0.16 8.14 -51.93 -0.42 -0.27 16 35 H 0.42 1.48 8.80 -34.47 -0.30 1.18 16 36 H 0.14 0.58 8.14 -51.92 -0.42 0.16 16 37 H 0.14 0.54 6.77 -51.93 -0.35 0.19 16 38 H 0.08 0.97 8.14 -51.92 -0.42 0.54 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.40 3.71 5.96 -40.82 -0.24 3.47 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.60 5.65 -51.93 -0.29 0.31 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.27 7.73 8.31 -40.82 -0.34 7.39 16 48 H 0.08 2.07 2.31 -51.93 -0.12 1.95 16 49 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 LS Contribution 390.30 15.07 5.88 5.88 Total: -1.00 -39.98 390.30 -9.82 -49.81 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -7.89 Total: -1.26 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -1.00 Total: -2.31 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: -0.14 Total: -54.50 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: -1.96 Total: -38.22 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -4.13 Total: 19.63 kcal Atomic # 16 Polarization: 21.56 SS G_CDS: -0.58 Total: 20.97 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -39.98 -9.82 -49.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595489958.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.139 kcal (2) G-P(sol) polarization free energy of solvation -39.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds