Wall clock time and date at job start Wed Apr 1 2020 04:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47255 * 2 1 4 4 N 1.46502 * 109.47224 * 239.99888 * 2 1 3 5 5 S 1.65597 * 119.99806 * 264.99991 * 4 2 1 6 6 O 1.42100 * 104.28023 * 181.06945 * 5 4 2 7 7 O 1.42100 * 104.27811 * 308.92971 * 5 4 2 8 8 C 1.81404 * 104.44772 * 64.99995 * 5 4 2 9 9 C 1.53008 * 109.47098 * 179.97438 * 8 5 4 10 10 N 1.46496 * 109.47023 * 179.97438 * 9 8 5 11 11 C 1.34781 * 120.00013 * 179.97438 * 10 9 8 12 12 O 1.21592 * 119.99706 * 354.91947 * 11 10 9 13 13 N 1.34770 * 120.00179 * 174.92278 * 11 10 9 14 14 C 1.46926 * 120.62960 * 4.74640 * 13 11 10 15 15 C 1.52765 * 109.00607 * 233.58017 * 14 13 11 16 16 C 1.53037 * 109.38716 * 305.59209 * 15 14 13 17 17 C 1.53043 * 109.54008 * 61.23175 * 16 15 14 18 18 H 1.08996 * 109.49208 * 58.59504 * 17 16 15 19 19 C 1.50703 * 109.49651 * 178.68648 * 17 16 15 20 20 H 1.07998 * 120.00120 * 359.83952 * 19 17 16 21 21 C 1.37876 * 119.99970 * 179.84004 * 19 17 16 22 22 N 1.31519 * 119.99632 * 0.02562 * 21 19 17 23 23 Si 1.86798 * 120.00176 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46944 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.46878 * 120.00127 * 23 21 19 26 26 H 1.48495 * 109.47118 * 240.00257 * 23 21 19 27 27 C 1.46924 * 120.63151 * 185.01886 * 13 11 10 28 28 H 1.08998 * 109.47068 * 300.00730 * 1 2 3 29 29 H 1.09004 * 109.47159 * 59.99679 * 1 2 3 30 30 H 1.08996 * 109.47333 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47230 * 119.99558 * 2 1 3 32 32 H 1.08998 * 109.47221 * 59.99919 * 3 2 1 33 33 H 1.09003 * 109.47221 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46640 * 299.99919 * 3 2 1 35 35 H 0.96992 * 119.99860 * 84.99869 * 4 2 1 36 36 H 1.08997 * 109.47405 * 299.99390 * 8 5 4 37 37 H 1.08999 * 109.47321 * 59.99950 * 8 5 4 38 38 H 1.09006 * 109.46575 * 299.99741 * 9 8 5 39 39 H 1.08999 * 109.47065 * 59.99806 * 9 8 5 40 40 H 0.96995 * 120.00364 * 359.97438 * 10 9 8 41 41 H 1.08998 * 109.58955 * 353.41119 * 14 13 11 42 42 H 1.08994 * 109.59020 * 113.84660 * 14 13 11 43 43 H 1.08995 * 109.56548 * 185.54917 * 15 14 13 44 44 H 1.09009 * 109.38397 * 65.51532 * 15 14 13 45 45 H 1.09008 * 109.45391 * 301.21856 * 16 15 14 46 46 H 1.08998 * 109.45328 * 181.25392 * 16 15 14 47 47 H 0.97001 * 119.99739 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.58886 * 246.15463 * 27 13 11 49 49 H 1.08996 * 109.58601 * 6.58287 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 16 2.4122 -2.2974 -1.1217 6 8 2.8606 -2.6095 -2.4335 7 8 3.2874 -2.3923 -0.0063 8 6 0.8407 -3.1328 -0.7707 9 6 1.0750 -4.6419 -0.6775 10 7 -0.1940 -5.3165 -0.3934 11 6 -0.2308 -6.6579 -0.2679 12 8 0.7691 -7.3161 -0.4813 13 7 -1.3758 -7.2698 0.0940 14 6 -2.6172 -6.5005 0.2543 15 6 -3.1985 -6.7770 1.6397 16 6 -3.3650 -8.2864 1.8288 17 6 -1.9984 -8.9684 1.7314 18 1 -1.3325 -8.5585 2.4908 19 6 -2.1593 -10.4508 1.9498 20 1 -3.1380 -10.8653 2.1417 21 6 -1.0572 -11.2779 1.9046 22 7 0.1347 -10.7731 1.6714 23 14 -1.2565 -13.1153 2.1760 24 1 -2.6880 -13.4275 2.4177 25 1 -0.7871 -13.8472 0.9721 26 1 -0.4528 -13.5319 3.3531 27 6 -1.4049 -8.7177 0.3416 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 2.1110 -0.2068 -2.0317 36 1 0.4386 -2.7682 0.1746 37 1 0.1315 -2.9243 -1.5717 38 1 1.4769 -5.0062 -1.6231 39 1 1.7844 -4.8507 0.1233 40 1 -1.0077 -4.7978 -0.2956 41 1 -2.4032 -5.4364 0.1551 42 1 -3.3357 -6.8034 -0.5073 43 1 -4.1689 -6.2894 1.7324 44 1 -2.5216 -6.3876 2.4003 45 1 -4.0228 -8.6791 1.0533 46 1 -3.8004 -8.4837 2.8084 47 1 0.9102 -11.3549 1.6399 48 1 -2.0226 -9.2051 -0.4128 49 1 -0.3912 -9.1160 0.2999 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595489970.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:00 Heat of formation + Delta-G solvation = -106.306456 kcal Electronic energy + Delta-G solvation = -29340.362492 eV Core-core repulsion = 25236.516775 eV Total energy + Delta-G solvation = -4103.845717 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.79469 -37.65600 -37.13812 -37.05865 -36.23999 -35.17841 -33.40711 -31.89940 -31.04451 -30.70688 -29.63762 -27.74515 -25.13502 -24.84419 -23.18850 -21.99319 -21.83541 -20.29856 -19.85628 -18.90371 -18.14953 -17.62897 -16.81725 -16.52959 -16.23511 -15.89949 -15.61780 -15.11414 -14.81353 -14.64420 -14.26574 -14.08357 -13.93463 -13.78205 -13.53380 -13.35063 -12.85602 -12.76370 -12.64301 -12.44740 -12.38779 -12.38569 -12.31934 -12.05028 -11.98238 -11.90342 -11.78075 -11.46639 -11.28094 -11.00263 -10.91325 -10.49804 -10.41129 -10.23931 -10.05832 -9.90009 -9.50476 -9.12039 -8.96351 -8.88400 -8.42102 -7.68680 -5.97986 -4.07095 -0.14129 2.32798 3.07660 3.31855 3.39980 3.42648 3.48319 3.77562 3.83086 4.08218 4.23738 4.33279 4.42168 4.45808 4.48881 4.62460 4.87029 4.96546 5.08315 5.20271 5.20970 5.30002 5.32031 5.42590 5.48186 5.50573 5.55936 5.60552 5.69026 5.72674 5.92899 6.11620 6.28385 6.52298 6.54912 6.61886 6.63539 6.77442 6.96622 7.03130 7.31564 7.45082 7.73674 7.91777 8.05940 8.40731 8.51517 8.96636 9.17766 9.58692 11.07249 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019398 B = 0.002283 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.120404 B =12260.928851 C =13095.387616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.135 3.865 3 C -0.156 4.156 4 N -1.115 6.115 5 S 2.621 3.379 6 O -0.951 6.951 7 O -0.947 6.947 8 C -0.651 4.651 9 C 0.153 3.847 10 N -0.752 5.752 11 C 0.700 3.300 12 O -0.579 6.579 13 N -0.621 5.621 14 C 0.115 3.885 15 C -0.134 4.134 16 C -0.110 4.110 17 C 0.039 3.961 18 H 0.028 0.972 19 C -0.521 4.521 20 H 0.059 0.941 21 C 0.062 3.938 22 N -0.879 5.879 23 Si 0.892 3.108 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.128 3.872 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.418 0.582 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.393 0.607 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.050 0.950 46 H 0.051 0.949 47 H 0.263 0.737 48 H 0.040 0.960 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.665 26.430 -4.827 26.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.028 3.972 3 C -0.214 4.214 4 N -0.874 5.874 5 S 2.711 3.289 6 O -0.941 6.941 7 O -0.936 6.936 8 C -0.779 4.779 9 C 0.027 3.973 10 N -0.413 5.413 11 C 0.401 3.599 12 O -0.456 6.456 13 N -0.357 5.357 14 C -0.009 4.009 15 C -0.172 4.172 16 C -0.148 4.148 17 C 0.020 3.980 18 H 0.047 0.953 19 C -0.560 4.560 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.516 5.516 23 Si 0.720 3.280 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 C 0.007 3.993 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.252 0.748 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.230 0.770 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.074 0.926 48 H 0.059 0.941 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.877 25.383 -4.930 25.872 hybrid contribution -1.365 -0.365 -0.029 1.413 sum -2.242 25.018 -4.960 25.603 Atomic orbital electron populations 1.22492 0.95273 1.02863 1.03323 1.20889 0.93869 0.95197 0.87243 1.22031 1.02145 0.94484 1.02782 1.55759 1.84136 1.28477 1.19037 1.04733 0.76145 0.73452 0.74545 1.93632 1.78965 1.83054 1.38450 1.93634 1.60004 1.85248 1.54730 1.31091 1.25495 1.08481 1.12795 1.20622 0.87990 0.85672 1.03058 1.45186 1.10008 1.06205 1.79932 1.15941 0.84328 0.81017 0.78614 1.90944 1.33854 1.63807 1.56994 1.47793 1.06380 1.10873 1.70675 1.21418 0.87340 0.94176 0.97955 1.21881 0.99631 0.99348 0.96379 1.21615 1.00491 0.92209 1.00440 1.19000 0.90745 0.95265 0.93027 0.95344 1.21097 0.93803 0.91465 1.49610 0.92312 1.25069 0.95332 0.98812 0.94889 1.69899 0.98471 1.35135 1.48117 0.86533 0.78083 0.85546 0.77818 1.19829 1.20962 1.21024 1.22231 1.06015 0.73487 0.97534 0.90898 0.91584 0.92072 0.88712 0.91045 0.91620 0.91960 0.74791 0.84288 0.84151 0.90235 0.90260 0.77037 0.92291 0.92056 0.92304 0.92190 0.93161 0.93018 0.92649 0.94142 0.85853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.62 9.48 37.16 0.35 -0.27 16 2 C 0.13 0.65 3.42 -67.93 -0.23 0.42 16 3 C -0.16 -0.61 9.44 37.16 0.35 -0.26 16 4 N -1.11 -6.36 5.36 -4.89 -0.03 -6.39 16 5 S 2.62 23.91 5.44 -107.50 -0.58 23.32 16 6 O -0.95 -11.92 18.08 -57.54 -1.04 -12.96 16 7 O -0.95 -12.09 17.39 -57.54 -1.00 -13.09 16 8 C -0.65 -4.87 5.34 37.16 0.20 -4.67 16 9 C 0.15 1.96 5.69 -4.04 -0.02 1.94 16 10 N -0.75 -10.91 5.47 -65.22 -0.36 -11.26 16 11 C 0.70 14.33 8.30 -86.92 -0.72 13.61 16 12 O -0.58 -14.69 15.79 5.28 0.08 -14.60 16 13 N -0.62 -12.42 2.98 -178.77 -0.53 -12.95 16 14 C 0.12 1.71 6.40 -3.93 -0.03 1.69 16 15 C -0.13 -2.06 6.06 -26.83 -0.16 -2.22 16 16 C -0.11 -2.14 5.11 -26.69 -0.14 -2.28 16 17 C 0.04 0.96 2.25 -91.65 -0.21 0.75 16 18 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 19 C -0.52 -14.09 8.56 -34.44 -0.29 -14.39 16 20 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 21 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 22 N -0.88 -25.87 11.39 55.43 0.63 -25.24 16 23 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 24 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.13 3.12 5.39 -3.71 -0.02 3.10 16 28 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.19 5.78 -51.93 -0.30 -0.11 16 31 H 0.09 0.51 7.48 -51.93 -0.39 0.12 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.42 1.73 8.80 -34.47 -0.30 1.43 16 36 H 0.14 0.73 6.77 -51.93 -0.35 0.38 16 37 H 0.14 0.69 8.14 -51.92 -0.42 0.27 16 38 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.39 4.30 5.93 -40.82 -0.24 4.06 16 41 H 0.06 0.66 5.57 -51.93 -0.29 0.37 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 45 H 0.05 0.96 8.14 -51.92 -0.42 0.53 16 46 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.12 3.55 5.15 -51.93 -0.27 3.28 16 LS Contribution 397.15 15.07 5.98 5.98 Total: -1.00 -38.00 397.15 -10.90 -48.91 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -8.02 Total: 2.90 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -1.01 Total: -0.96 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -0.28 Total: -55.84 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -1.96 Total: -40.65 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 23.91 SS G_CDS: -0.58 Total: 23.32 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -38.00 -10.90 -48.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595489970.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.400 kcal (2) G-P(sol) polarization free energy of solvation -38.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds