Wall clock time and date at job start Wed Apr 1 2020 04:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47255 * 2 1 4 4 N 1.46502 * 109.47224 * 239.99888 * 2 1 3 5 5 S 1.65597 * 119.99806 * 264.99991 * 4 2 1 6 6 O 1.42100 * 104.28023 * 181.06945 * 5 4 2 7 7 O 1.42100 * 104.27811 * 308.92971 * 5 4 2 8 8 C 1.81404 * 104.44772 * 64.99995 * 5 4 2 9 9 C 1.53008 * 109.47098 * 179.97438 * 8 5 4 10 10 N 1.46496 * 109.47023 * 179.97438 * 9 8 5 11 11 C 1.34781 * 120.00013 * 179.97438 * 10 9 8 12 12 O 1.21592 * 119.99706 * 354.91947 * 11 10 9 13 13 N 1.34770 * 120.00179 * 174.92278 * 11 10 9 14 14 C 1.46926 * 120.62960 * 4.74640 * 13 11 10 15 15 C 1.52765 * 109.00607 * 233.58017 * 14 13 11 16 16 C 1.53037 * 109.38716 * 305.59209 * 15 14 13 17 17 C 1.53043 * 109.54008 * 61.23175 * 16 15 14 18 18 H 1.08996 * 109.49208 * 58.59504 * 17 16 15 19 19 C 1.50703 * 109.49651 * 178.68648 * 17 16 15 20 20 H 1.07998 * 120.00120 * 359.83952 * 19 17 16 21 21 C 1.37876 * 119.99970 * 179.84004 * 19 17 16 22 22 N 1.31519 * 119.99632 * 0.02562 * 21 19 17 23 23 Si 1.86798 * 120.00176 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46944 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.46878 * 120.00127 * 23 21 19 26 26 H 1.48495 * 109.47118 * 240.00257 * 23 21 19 27 27 C 1.46924 * 120.63151 * 185.01886 * 13 11 10 28 28 H 1.08998 * 109.47068 * 300.00730 * 1 2 3 29 29 H 1.09004 * 109.47159 * 59.99679 * 1 2 3 30 30 H 1.08996 * 109.47333 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47230 * 119.99558 * 2 1 3 32 32 H 1.08998 * 109.47221 * 59.99919 * 3 2 1 33 33 H 1.09003 * 109.47221 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46640 * 299.99919 * 3 2 1 35 35 H 0.96992 * 119.99860 * 84.99869 * 4 2 1 36 36 H 1.08997 * 109.47405 * 299.99390 * 8 5 4 37 37 H 1.08999 * 109.47321 * 59.99950 * 8 5 4 38 38 H 1.09006 * 109.46575 * 299.99741 * 9 8 5 39 39 H 1.08999 * 109.47065 * 59.99806 * 9 8 5 40 40 H 0.96995 * 120.00364 * 359.97438 * 10 9 8 41 41 H 1.08998 * 109.58955 * 353.41119 * 14 13 11 42 42 H 1.08994 * 109.59020 * 113.84660 * 14 13 11 43 43 H 1.08995 * 109.56548 * 185.54917 * 15 14 13 44 44 H 1.09009 * 109.38397 * 65.51532 * 15 14 13 45 45 H 1.09008 * 109.45391 * 301.21856 * 16 15 14 46 46 H 1.08998 * 109.45328 * 181.25392 * 16 15 14 47 47 H 0.97001 * 119.99739 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.58886 * 246.15463 * 27 13 11 49 49 H 1.08996 * 109.58601 * 6.58287 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 16 2.4122 -2.2974 -1.1217 6 8 2.8606 -2.6095 -2.4335 7 8 3.2874 -2.3923 -0.0063 8 6 0.8407 -3.1328 -0.7707 9 6 1.0750 -4.6419 -0.6775 10 7 -0.1940 -5.3165 -0.3934 11 6 -0.2308 -6.6579 -0.2679 12 8 0.7691 -7.3161 -0.4813 13 7 -1.3758 -7.2698 0.0940 14 6 -2.6172 -6.5005 0.2543 15 6 -3.1985 -6.7770 1.6397 16 6 -3.3650 -8.2864 1.8288 17 6 -1.9984 -8.9684 1.7314 18 1 -1.3325 -8.5585 2.4908 19 6 -2.1593 -10.4508 1.9498 20 1 -3.1380 -10.8653 2.1417 21 6 -1.0572 -11.2779 1.9046 22 7 0.1347 -10.7731 1.6714 23 14 -1.2565 -13.1153 2.1760 24 1 -2.6880 -13.4275 2.4177 25 1 -0.7871 -13.8472 0.9721 26 1 -0.4528 -13.5319 3.3531 27 6 -1.4049 -8.7177 0.3416 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 2.1110 -0.2068 -2.0317 36 1 0.4386 -2.7682 0.1746 37 1 0.1315 -2.9243 -1.5717 38 1 1.4769 -5.0062 -1.6231 39 1 1.7844 -4.8507 0.1233 40 1 -1.0077 -4.7978 -0.2956 41 1 -2.4032 -5.4364 0.1551 42 1 -3.3357 -6.8034 -0.5073 43 1 -4.1689 -6.2894 1.7324 44 1 -2.5216 -6.3876 2.4003 45 1 -4.0228 -8.6791 1.0533 46 1 -3.8004 -8.4837 2.8084 47 1 0.9102 -11.3549 1.6399 48 1 -2.0226 -9.2051 -0.4128 49 1 -0.3912 -9.1160 0.2999 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595489970.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:59 Heat of formation + Delta-G solvation = -137.295102 kcal Electronic energy + Delta-G solvation = -29341.706260 eV Core-core repulsion = 25236.516775 eV Total energy + Delta-G solvation = -4105.189486 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.33848 -38.62420 -38.37512 -37.67895 -37.10568 -36.52522 -35.28268 -33.55442 -31.98245 -31.44258 -31.22964 -28.02346 -27.06175 -26.26579 -24.37838 -23.41242 -22.36313 -21.84981 -20.72585 -20.28720 -19.15683 -18.88327 -18.21665 -17.57377 -17.39967 -16.98817 -16.75481 -16.54029 -16.04589 -15.58268 -15.36041 -15.22017 -15.19677 -15.12052 -14.49682 -14.34328 -14.31938 -13.97738 -13.76692 -13.55345 -13.38145 -13.29421 -13.21384 -12.97698 -12.91444 -12.88112 -12.65654 -12.50102 -12.32618 -12.27562 -12.20505 -12.03509 -11.80653 -11.78492 -11.62907 -11.26492 -10.95979 -10.83323 -10.52299 -10.48736 -10.29380 -9.29261 -8.10205 -6.27309 -0.88250 1.39609 1.41531 1.53382 1.63989 1.78058 2.19507 2.42066 2.69563 3.04744 3.15953 3.20035 3.28919 3.74127 3.89570 4.04618 4.17556 4.18669 4.21663 4.28432 4.30185 4.44772 4.51890 4.61446 4.64451 4.74247 4.81952 4.86539 4.87962 4.96370 5.04085 5.12349 5.26989 5.27911 5.30043 5.31721 5.39486 5.42319 5.46638 5.57011 5.64253 5.89591 5.97238 6.13824 6.15060 6.36112 6.86483 7.09268 7.42907 7.62326 8.93192 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019398 B = 0.002283 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.120404 B =12260.928851 C =13095.387616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.126 3.874 3 C -0.157 4.157 4 N -1.100 6.100 5 S 2.632 3.368 6 O -0.991 6.991 7 O -0.990 6.990 8 C -0.630 4.630 9 C 0.140 3.860 10 N -0.724 5.724 11 C 0.690 3.310 12 O -0.640 6.640 13 N -0.625 5.625 14 C 0.107 3.893 15 C -0.126 4.126 16 C -0.106 4.106 17 C 0.037 3.963 18 H -0.014 1.014 19 C -0.533 4.533 20 H 0.063 0.937 21 C 0.007 3.993 22 N -0.916 5.916 23 Si 0.958 3.042 24 H -0.259 1.259 25 H -0.284 1.284 26 H -0.283 1.283 27 C 0.141 3.859 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.427 0.573 36 H 0.172 0.828 37 H 0.179 0.821 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.415 0.585 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.107 0.893 44 H 0.051 0.949 45 H 0.057 0.943 46 H 0.051 0.949 47 H 0.259 0.741 48 H 0.035 0.965 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.123 29.059 -4.930 30.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.020 3.980 3 C -0.216 4.216 4 N -0.863 5.863 5 S 2.724 3.276 6 O -0.981 6.981 7 O -0.980 6.980 8 C -0.759 4.759 9 C 0.014 3.986 10 N -0.386 5.386 11 C 0.391 3.609 12 O -0.522 6.522 13 N -0.361 5.361 14 C -0.014 4.014 15 C -0.164 4.164 16 C -0.143 4.143 17 C 0.018 3.982 18 H 0.004 0.996 19 C -0.572 4.572 20 H 0.081 0.919 21 C -0.192 4.192 22 N -0.555 5.555 23 Si 0.783 3.217 24 H -0.183 1.183 25 H -0.210 1.210 26 H -0.209 1.209 27 C 0.018 3.982 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.263 0.737 36 H 0.189 0.811 37 H 0.197 0.803 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.256 0.744 41 H 0.124 0.876 42 H 0.099 0.901 43 H 0.125 0.875 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.053 0.947 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.383 28.102 -5.035 28.884 hybrid contribution -0.320 -1.108 0.025 1.154 sum -4.704 26.994 -5.010 27.855 Atomic orbital electron populations 1.22513 0.93527 1.03699 1.04267 1.21110 0.95294 0.95338 0.86288 1.22057 1.01404 0.94136 1.03958 1.55402 1.84043 1.26877 1.19999 1.04061 0.76456 0.74163 0.72873 1.93577 1.80330 1.84100 1.40071 1.93583 1.62357 1.86177 1.55870 1.30945 1.24990 1.03846 1.16139 1.20741 0.86979 0.89017 1.01898 1.44848 1.11593 1.03984 1.78221 1.16248 0.83561 0.82659 0.78397 1.90903 1.36107 1.65679 1.59484 1.47675 1.08328 1.09647 1.70403 1.21844 0.85233 0.96087 0.98274 1.21843 1.02051 0.96163 0.96328 1.21510 0.96922 0.95111 1.00785 1.18933 0.93078 0.94506 0.91681 0.99595 1.21559 0.93805 0.93172 1.48635 0.91852 1.25924 0.95034 1.03415 0.94836 1.70107 0.99224 1.36489 1.49663 0.85509 0.78633 0.80108 0.77439 1.18254 1.21004 1.20947 1.21613 1.02838 0.76486 0.97276 0.89959 0.90734 0.91256 0.89515 0.89841 0.92890 0.90843 0.73651 0.81067 0.80334 0.91444 0.92066 0.74429 0.87638 0.90124 0.87467 0.93036 0.92409 0.92981 0.93220 0.94706 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.55 9.48 71.98 0.68 0.14 16 2 C 0.13 0.92 3.42 44.99 0.15 1.08 16 3 C -0.16 -0.91 9.44 71.98 0.68 -0.23 16 4 N -1.10 -10.55 5.36 -169.38 -0.91 -11.45 16 5 S 2.63 46.11 5.44 -56.49 -0.31 45.80 16 6 O -0.99 -24.93 18.08 -127.65 -2.31 -27.24 16 7 O -0.99 -25.77 17.39 -127.65 -2.22 -27.99 16 8 C -0.63 -7.59 5.34 71.98 0.38 -7.21 16 9 C 0.14 3.48 5.69 86.38 0.49 3.97 16 10 N -0.72 -19.59 5.47 -478.52 -2.62 -22.21 16 11 C 0.69 28.45 8.30 179.06 1.49 29.93 16 12 O -0.64 -34.26 15.79 -4.01 -0.06 -34.32 16 13 N -0.62 -24.71 2.98 -837.76 -2.49 -27.20 16 14 C 0.11 2.77 6.40 86.22 0.55 3.32 16 15 C -0.13 -3.39 6.06 30.53 0.19 -3.20 16 16 C -0.11 -3.93 5.11 30.62 0.16 -3.78 16 17 C 0.04 1.88 2.25 -11.46 -0.03 1.86 16 18 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 19 C -0.53 -29.44 8.56 25.60 0.22 -29.22 16 20 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 21 C 0.01 0.41 5.30 84.65 0.45 0.86 16 22 N -0.92 -56.80 11.39 21.45 0.24 -56.56 16 23 Si 0.96 44.84 29.54 68.60 2.03 46.86 16 24 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 25 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 26 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 27 C 0.14 7.11 5.39 86.36 0.47 7.57 16 28 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.07 0.13 8.14 -2.38 -0.02 0.11 16 30 H 0.07 0.09 5.78 -2.39 -0.01 0.08 16 31 H 0.09 0.79 7.48 -2.39 -0.02 0.77 16 32 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.05 0.44 8.14 -2.39 -0.02 0.43 16 34 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.43 2.74 8.80 -96.76 -0.85 1.89 16 36 H 0.17 1.03 6.77 -2.39 -0.02 1.01 16 37 H 0.18 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.42 7.19 5.93 -92.71 -0.55 6.64 16 41 H 0.11 1.73 5.57 -2.39 -0.01 1.72 16 42 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.05 1.49 8.14 -2.38 -0.02 1.48 16 45 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 46 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 48 H 0.03 1.74 8.14 -2.39 -0.02 1.72 16 49 H 0.07 4.52 5.15 -2.39 -0.01 4.51 16 Total: -1.00 -91.28 397.15 -3.21 -94.49 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -0.44 Total: 14.71 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 5.88 Total: 5.09 kcal Atomic # 7 Polarization: -111.64 SS G_CDS: -5.78 Total: -117.42 kcal Atomic # 8 Polarization: -84.96 SS G_CDS: -4.59 Total: -89.55 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: 46.11 SS G_CDS: -0.31 Total: 45.80 kcal Total: -91.28 -3.21 -94.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595489970.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.803 kcal (2) G-P(sol) polarization free energy of solvation -91.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds