Wall clock time and date at job start Wed Apr 1 2020 05:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 120.00350 * 2 1 4 4 N 1.34780 * 120.00025 * 180.02562 * 2 1 3 5 5 C 1.46498 * 120.00119 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47115 * 175.34108 * 5 4 2 7 7 H 1.08999 * 109.70199 * 304.36903 * 6 5 4 8 8 C 1.53620 * 109.66426 * 64.96840 * 6 5 4 9 9 C 1.53046 * 109.23999 * 174.55133 * 8 6 5 10 10 C 1.53048 * 109.53579 * 298.50905 * 9 8 6 11 11 C 1.53191 * 109.31216 * 61.36673 * 10 9 8 12 12 N 1.46923 * 109.58523 * 184.01906 * 6 5 4 13 13 S 1.65605 * 120.63303 * 6.62525 * 12 6 5 14 14 O 1.42098 * 106.40324 * 197.23264 * 13 12 6 15 15 O 1.42103 * 106.39930 * 330.15419 * 13 12 6 16 16 N 1.65599 * 107.21817 * 83.69242 * 13 12 6 17 17 C 1.46499 * 119.99994 * 78.52681 * 16 13 12 18 18 C 1.46502 * 120.00262 * 258.53116 * 16 13 12 19 19 H 1.09003 * 109.46720 * 353.95920 * 18 16 13 20 20 C 1.52996 * 109.47192 * 233.96140 * 18 16 13 21 21 C 1.50699 * 109.47370 * 113.96023 * 18 16 13 22 22 H 1.07998 * 119.99983 * 0.02562 * 21 18 16 23 23 C 1.37876 * 120.00020 * 180.02562 * 21 18 16 24 24 N 1.31516 * 120.00241 * 359.97438 * 23 21 18 25 25 Si 1.86804 * 119.99841 * 179.97438 * 23 21 18 26 26 H 1.48500 * 109.47131 * 59.99585 * 25 23 21 27 27 H 1.48505 * 109.46805 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47108 * 299.99315 * 25 23 21 29 29 H 1.09000 * 109.47209 * 270.00113 * 1 2 3 30 30 H 1.09005 * 109.47283 * 29.99787 * 1 2 3 31 31 H 1.08997 * 109.47129 * 149.99798 * 1 2 3 32 32 H 0.96996 * 119.99818 * 359.97438 * 4 2 1 33 33 H 1.08998 * 109.47342 * 55.33769 * 5 4 2 34 34 H 1.09006 * 109.46871 * 295.34120 * 5 4 2 35 35 H 1.08995 * 109.63796 * 54.56164 * 8 6 5 36 36 H 1.09000 * 109.45799 * 294.43038 * 8 6 5 37 37 H 1.08998 * 109.46257 * 178.48814 * 9 8 6 38 38 H 1.09000 * 109.45072 * 58.52033 * 9 8 6 39 39 H 1.09000 * 109.49159 * 301.41533 * 10 9 8 40 40 H 1.08994 * 109.49297 * 181.31765 * 10 9 8 41 41 H 1.08994 * 109.58457 * 185.58071 * 11 10 9 42 42 H 1.08995 * 109.70683 * 65.22183 * 11 10 9 43 43 H 1.09010 * 109.46935 * 94.66041 * 17 16 13 44 44 H 1.09001 * 109.47519 * 214.65663 * 17 16 13 45 45 H 1.08998 * 109.47144 * 334.66150 * 17 16 13 46 46 H 1.09003 * 109.47108 * 299.99542 * 20 18 16 47 47 H 1.09000 * 109.47368 * 59.99441 * 20 18 16 48 48 H 1.09002 * 109.46974 * 179.97438 * 20 18 16 49 49 H 0.96997 * 120.00189 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1558 -2.6050 0.1164 7 1 3.7317 -3.0746 1.0040 8 6 3.7515 -3.3998 -1.1345 9 6 4.3804 -4.7936 -1.0715 10 6 5.9055 -4.6667 -1.0540 11 6 6.3346 -3.8859 0.1922 12 7 5.6218 -2.6013 0.2140 13 16 6.4546 -1.1766 0.3530 14 8 7.8051 -1.4672 0.0203 15 8 5.6822 -0.1930 -0.3216 16 7 6.4473 -0.7589 1.9554 17 6 7.3669 -1.4156 2.8878 18 6 5.5212 0.2673 2.4408 19 1 4.9979 0.7136 1.5951 20 6 6.3046 1.3504 3.1850 21 6 4.5204 -0.3610 3.3760 22 1 4.5695 -1.4188 3.5880 23 6 3.5420 0.4146 3.9609 24 7 3.4824 1.7029 3.7031 25 14 2.3010 -0.3643 5.1197 26 1 3.0135 -0.9725 6.2719 27 1 1.3623 0.6760 5.6117 28 1 1.5409 -1.4155 4.3969 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5138 32 1 1.6959 -2.0072 -0.0005 33 1 4.0089 -0.5834 0.8458 34 1 4.0095 -0.7268 -0.9284 35 1 4.1031 -2.8821 -2.0269 36 1 2.6660 -3.4918 -1.1711 37 1 4.0740 -5.3701 -1.9444 38 1 4.0478 -5.3013 -0.1661 39 1 6.2366 -4.1369 -1.9472 40 1 6.3529 -5.6603 -1.0328 41 1 7.4092 -3.7070 0.1592 42 1 6.0865 -4.4567 1.0870 43 1 8.2672 -0.8107 2.9967 44 1 6.8833 -1.5252 3.8585 45 1 7.6345 -2.3992 2.5020 46 1 6.8278 0.9041 4.0307 47 1 7.0285 1.8049 2.5086 48 1 5.6155 2.1141 3.5457 49 1 2.7944 2.2487 4.1150 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599522300.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:22 Heat of formation + Delta-G solvation = -124.703245 kcal Electronic energy + Delta-G solvation = -32609.354470 eV Core-core repulsion = 28504.711009 eV Total energy + Delta-G solvation = -4104.643462 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.71059 -39.49725 -38.61086 -37.88969 -36.94183 -35.70034 -34.47886 -33.48547 -32.48593 -30.91174 -30.44018 -27.43162 -26.98409 -26.93334 -25.02901 -23.14457 -22.58620 -21.54936 -21.40182 -19.78312 -18.74273 -18.55062 -18.26094 -17.62788 -17.20569 -16.92921 -16.46354 -16.29269 -15.67438 -15.58367 -15.25268 -15.10506 -14.96695 -14.80396 -14.46814 -14.43936 -14.38083 -13.93119 -13.74062 -13.43905 -13.26005 -13.22345 -13.07770 -13.00655 -12.98283 -12.76329 -12.68760 -12.61180 -12.53167 -12.19149 -12.13244 -12.01219 -11.84023 -11.72673 -11.49695 -11.20476 -11.14776 -10.79144 -10.43662 -10.00543 -9.84955 -9.62292 -8.02153 -6.17698 -0.37445 1.42006 1.44826 1.52126 1.83877 1.90957 2.39201 2.47800 2.58067 3.26287 3.34765 3.53005 3.78265 3.98130 4.05592 4.09690 4.16795 4.25049 4.36918 4.44883 4.56382 4.63444 4.68359 4.72177 4.75455 4.77681 4.85280 4.91223 4.95011 5.02590 5.05662 5.06970 5.14484 5.17539 5.24201 5.27587 5.30692 5.34822 5.52378 5.56989 5.61685 5.64255 5.78264 5.92965 6.12784 6.30723 6.74921 6.89005 7.51074 7.52725 9.01579 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009431 B = 0.006614 C = 0.004996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.171157 B = 4232.360421 C = 5602.912008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.489 3.511 3 O -0.594 6.594 4 N -0.709 5.709 5 C 0.079 3.921 6 C 0.154 3.846 7 H 0.093 0.907 8 C -0.125 4.125 9 C -0.110 4.110 10 C -0.130 4.130 11 C 0.108 3.892 12 N -0.995 5.995 13 S 2.777 3.223 14 O -1.010 7.010 15 O -1.005 7.005 16 N -0.999 5.999 17 C 0.102 3.898 18 C 0.272 3.728 19 H 0.027 0.973 20 C -0.138 4.138 21 C -0.523 4.523 22 H 0.068 0.932 23 C 0.019 3.981 24 N -0.910 5.910 25 Si 0.950 3.050 26 H -0.269 1.269 27 H -0.294 1.294 28 H -0.262 1.262 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.120 0.880 32 H 0.413 0.587 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.053 0.947 40 H 0.102 0.898 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.048 0.952 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.046 0.954 47 H 0.013 0.987 48 H 0.066 0.934 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.919 -18.092 -6.661 19.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.277 3.723 3 O -0.473 6.473 4 N -0.365 5.365 5 C -0.047 4.047 6 C 0.048 3.952 7 H 0.111 0.889 8 C -0.164 4.164 9 C -0.148 4.148 10 C -0.169 4.169 11 C -0.016 4.016 12 N -0.837 5.837 13 S 2.789 3.211 14 O -0.994 6.994 15 O -0.988 6.988 16 N -0.840 5.840 17 C -0.044 4.044 18 C 0.168 3.832 19 H 0.045 0.955 20 C -0.198 4.198 21 C -0.562 4.562 22 H 0.086 0.914 23 C -0.181 4.181 24 N -0.549 5.549 25 Si 0.775 3.225 26 H -0.194 1.194 27 H -0.221 1.221 28 H -0.186 1.186 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.138 0.862 32 H 0.251 0.749 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.115 0.885 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.072 0.928 40 H 0.120 0.880 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.067 0.933 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.065 0.935 47 H 0.032 0.968 48 H 0.085 0.915 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.111 -16.701 -7.327 18.359 hybrid contribution -0.681 0.172 1.077 1.285 sum -2.792 -16.529 -6.250 17.890 Atomic orbital electron populations 1.21860 0.87804 1.06478 1.05545 1.21744 0.92470 0.83101 0.75011 1.90795 1.72230 1.33587 1.50723 1.45759 1.06407 1.09028 1.75271 1.22514 0.81375 0.96387 1.04398 1.21273 0.78767 0.94423 1.00738 0.88946 1.22077 1.02113 0.96604 0.95610 1.21481 0.94276 0.95294 1.03712 1.21909 0.97355 1.01025 0.96653 1.21775 0.96334 0.82814 1.00664 1.57962 1.15003 1.22006 1.88714 1.01892 0.72331 0.73274 0.73565 1.93481 1.36248 1.85736 1.83936 1.93661 1.70400 1.60951 1.73797 1.57683 1.48907 1.50981 1.26467 1.21354 0.91903 0.96044 0.95057 1.18445 0.86072 0.84521 0.94144 0.95503 1.21944 0.98521 1.00351 0.98954 1.21409 1.12564 0.95125 1.27139 0.91410 1.25671 0.99328 0.95050 0.98042 1.70048 1.34318 1.06358 1.44154 0.85742 0.79083 0.78120 0.79508 1.19448 1.22063 1.18619 0.88528 0.89099 0.86151 0.74940 0.91049 0.90816 0.92635 0.88465 0.89650 0.90232 0.92781 0.87981 0.89672 0.89178 0.93332 0.90604 0.90504 0.93473 0.96799 0.91481 0.93293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.77 10.30 71.23 0.73 -3.03 16 2 C 0.49 18.55 7.94 87.66 0.70 19.24 16 3 O -0.59 -31.42 17.10 -3.04 -0.05 -31.47 16 4 N -0.71 -22.95 5.37 -463.06 -2.49 -25.44 16 5 C 0.08 3.08 3.40 86.38 0.29 3.37 16 6 C 0.15 4.40 3.05 45.12 0.14 4.54 16 7 H 0.09 2.41 8.14 -2.39 -0.02 2.40 16 8 C -0.12 -2.50 5.20 30.82 0.16 -2.34 16 9 C -0.11 -1.59 5.88 30.63 0.18 -1.41 16 10 C -0.13 -2.19 6.08 30.67 0.19 -2.00 16 11 C 0.11 2.40 6.50 86.36 0.56 2.96 16 12 N -0.99 -30.44 3.34 -490.05 -1.64 -32.07 16 13 S 2.78 113.66 5.54 -56.49 -0.31 113.35 16 14 O -1.01 -42.31 16.00 -128.00 -2.05 -44.36 16 15 O -1.00 -49.43 11.68 -128.00 -1.50 -50.92 16 16 N -1.00 -42.54 3.12 -520.44 -1.62 -44.16 16 17 C 0.10 3.52 9.21 127.77 1.18 4.70 16 18 C 0.27 14.01 1.84 44.24 0.08 14.09 16 19 H 0.03 1.66 5.43 -2.39 -0.01 1.65 16 20 C -0.14 -7.02 8.87 71.98 0.64 -6.38 16 21 C -0.52 -26.94 7.41 25.60 0.19 -26.75 16 22 H 0.07 3.28 7.68 -2.91 -0.02 3.26 16 23 C 0.02 1.04 5.30 84.65 0.45 1.49 16 24 N -0.91 -53.50 11.32 21.45 0.24 -53.26 16 25 Si 0.95 41.60 29.54 68.60 2.03 43.63 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 27 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 28 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 29 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 31 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.41 8.84 7.57 -92.71 -0.70 8.14 16 33 H 0.07 3.51 3.40 -2.39 -0.01 3.50 16 34 H 0.07 3.31 6.19 -2.38 -0.01 3.29 16 35 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.10 1.42 7.25 -2.39 -0.02 1.41 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.08 2.02 6.79 -2.39 -0.02 2.00 16 42 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 44 H 0.08 2.61 7.43 -2.39 -0.02 2.60 16 45 H 0.08 2.14 7.92 -2.39 -0.02 2.12 16 46 H 0.05 2.18 7.54 -2.39 -0.02 2.16 16 47 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.07 3.78 6.07 -2.39 -0.01 3.76 16 49 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -82.27 384.61 -1.65 -83.92 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: 0.25 Total: 32.30 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 5.49 Total: 8.49 kcal Atomic # 7 Polarization: -149.43 SS G_CDS: -5.51 Total: -154.93 kcal Atomic # 8 Polarization: -123.16 SS G_CDS: -3.60 Total: -126.75 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 16 Polarization: 113.66 SS G_CDS: -0.31 Total: 113.35 kcal Total: -82.27 -1.65 -83.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599522300.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.782 kcal (2) G-P(sol) polarization free energy of solvation -82.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds