Wall clock time and date at job start Wed Apr 1 2020 05:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21281 * 120.00518 * 2 1 4 4 N 1.34779 * 119.99976 * 180.02562 * 2 1 3 5 5 C 1.46496 * 120.00512 * 185.15679 * 4 2 1 6 6 C 1.53002 * 109.47556 * 187.89320 * 5 4 2 7 7 H 1.09001 * 109.58016 * 51.57579 * 6 5 4 8 8 C 1.53191 * 109.58786 * 171.99693 * 6 5 4 9 9 C 1.53039 * 109.31271 * 174.42292 * 8 6 5 10 10 C 1.53042 * 109.53715 * 298.64016 * 9 8 6 11 11 C 1.53191 * 109.31413 * 61.36231 * 10 9 8 12 12 N 1.46918 * 108.77764 * 305.36422 * 11 10 9 13 13 S 1.65596 * 120.63422 * 233.63082 * 12 11 10 14 14 O 1.42102 * 106.40533 * 169.43763 * 13 12 11 15 15 O 1.42098 * 106.40326 * 302.36308 * 13 12 11 16 16 N 1.65602 * 107.21908 * 55.90145 * 13 12 11 17 17 C 1.46501 * 120.00159 * 84.38910 * 16 13 12 18 18 C 1.46499 * 119.99855 * 264.39178 * 16 13 12 19 19 H 1.09002 * 109.47516 * 4.32789 * 18 16 13 20 20 C 1.53001 * 109.46994 * 124.32480 * 18 16 13 21 21 C 1.50697 * 109.47346 * 244.32129 * 18 16 13 22 22 H 1.08006 * 119.99780 * 354.11189 * 21 18 16 23 23 C 1.37879 * 120.00344 * 174.10027 * 21 18 16 24 24 N 1.31513 * 119.99771 * 0.91941 * 23 21 18 25 25 Si 1.86790 * 120.00124 * 180.91576 * 23 21 18 26 26 H 1.48498 * 109.47347 * 60.00345 * 25 23 21 27 27 H 1.48502 * 109.47583 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47493 * 300.00218 * 25 23 21 29 29 H 1.08997 * 109.47403 * 185.00481 * 1 2 3 30 30 H 1.08995 * 109.47355 * 305.01098 * 1 2 3 31 31 H 1.09008 * 109.46889 * 65.00603 * 1 2 3 32 32 H 0.97004 * 119.99626 * 5.14940 * 4 2 1 33 33 H 1.09004 * 109.47393 * 67.89055 * 5 4 2 34 34 H 1.09005 * 109.46614 * 307.89110 * 5 4 2 35 35 H 1.09002 * 109.50074 * 294.37735 * 8 6 5 36 36 H 1.09002 * 109.49545 * 54.47481 * 8 6 5 37 37 H 1.08998 * 109.46349 * 178.61922 * 9 8 6 38 38 H 1.09002 * 109.45063 * 58.65059 * 9 8 6 39 39 H 1.08996 * 109.49584 * 301.41067 * 10 9 8 40 40 H 1.09000 * 109.49567 * 181.31472 * 10 9 8 41 41 H 1.09003 * 109.58684 * 185.57470 * 11 10 9 42 42 H 1.09001 * 109.70291 * 65.22553 * 11 10 9 43 43 H 1.08996 * 109.46988 * 90.00386 * 17 16 13 44 44 H 1.08999 * 109.47203 * 210.00491 * 17 16 13 45 45 H 1.09000 * 109.47251 * 330.00295 * 17 16 13 46 46 H 1.08998 * 109.47262 * 299.99550 * 20 18 16 47 47 H 1.09004 * 109.47558 * 60.00236 * 20 18 16 48 48 H 1.09004 * 109.47135 * 180.02562 * 20 18 16 49 49 H 0.97002 * 120.00118 * 185.00124 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6413 -1.1700 0.1135 6 6 4.1677 -2.5893 -0.1089 7 1 3.7579 -2.9897 -1.0362 8 6 5.6973 -2.5631 -0.1891 9 6 6.2244 -3.9975 -0.2718 10 6 5.8197 -4.7649 0.9890 11 6 4.2915 -4.8160 1.0824 12 7 3.7676 -3.4450 1.0164 13 16 2.7461 -2.8747 2.1883 14 8 2.6289 -1.4751 1.9723 15 8 1.6299 -3.7539 2.2102 16 7 3.5161 -3.0604 3.6426 17 6 4.4594 -2.0405 4.1076 18 6 3.2541 -4.2447 4.4642 19 1 2.5910 -4.9215 3.9253 20 6 4.5736 -4.9574 4.7670 21 6 2.6017 -3.8254 5.7563 22 1 2.4885 -2.7767 5.9887 23 6 2.1492 -4.7804 6.6419 24 7 2.3031 -6.0573 6.3672 25 14 1.3176 -4.2607 8.2317 26 1 0.1069 -3.4599 7.9182 27 1 0.9270 -5.4677 9.0037 28 1 2.2581 -3.4413 9.0375 29 1 -0.3634 -1.0237 0.0896 30 1 -0.3634 0.5896 0.8416 31 1 -0.3633 0.4342 -0.9315 32 1 1.6987 -2.0055 -0.0763 33 1 3.9289 -0.8275 1.1076 34 1 4.0656 -0.5033 -0.6373 35 1 6.0057 -2.0104 -1.0765 36 1 6.0999 -2.0783 0.7003 37 1 7.3112 -3.9809 -0.3536 38 1 5.8018 -4.4896 -1.1477 39 1 6.2212 -4.2593 1.8672 40 1 6.2154 -5.7794 0.9400 41 1 3.9983 -5.2742 2.0270 42 1 3.8920 -5.4002 0.2535 43 1 3.9256 -1.2917 4.6927 44 1 5.2242 -2.5084 4.7273 45 1 4.9302 -1.5624 3.2485 46 1 5.0455 -5.2608 3.8325 47 1 5.2368 -4.2808 5.3061 48 1 4.3786 -5.8389 5.3780 49 1 1.9213 -6.7291 6.9536 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599522301.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:26 Heat of formation + Delta-G solvation = -65.112510 kcal Electronic energy + Delta-G solvation = -32303.202236 eV Core-core repulsion = 28201.142823 eV Total energy + Delta-G solvation = -4102.059414 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.77865 -38.45148 -37.01334 -36.21443 -35.50112 -34.13651 -32.58584 -32.32459 -31.74085 -29.57693 -29.16447 -26.09272 -25.70757 -25.12537 -24.01439 -22.29728 -21.03368 -20.48428 -20.14825 -18.53783 -17.40869 -16.82730 -16.43572 -16.23022 -16.04003 -15.76806 -15.44586 -14.86900 -14.72408 -14.40850 -14.25274 -13.78618 -13.61089 -13.49780 -13.21994 -13.16229 -12.86950 -12.80897 -12.52906 -12.14028 -12.04903 -11.92545 -11.74204 -11.63409 -11.43282 -11.29687 -11.26051 -11.05781 -11.02447 -10.82587 -10.73927 -10.59228 -10.53325 -10.34589 -10.11920 -9.86832 -9.54462 -9.32275 -8.91691 -8.49862 -8.39274 -8.01094 -6.10894 -4.17370 1.10613 3.00660 3.28715 3.32516 3.33130 3.37424 3.49574 3.91298 4.38056 4.41122 4.70598 4.74540 4.95041 4.99381 5.08421 5.15289 5.18889 5.20988 5.28761 5.35700 5.52664 5.54174 5.57046 5.62662 5.67515 5.76892 5.85930 5.93965 5.95636 5.98082 6.05835 6.18906 6.26624 6.34833 6.42954 6.50752 6.62687 6.67497 6.70024 6.78244 6.92900 7.37819 7.55952 7.69437 7.73601 7.95404 8.22055 8.54308 8.85308 9.48873 10.95588 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011889 B = 0.004920 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.609970 B = 5689.924588 C = 7247.278659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.527 3.473 3 O -0.559 6.559 4 N -0.704 5.704 5 C 0.097 3.903 6 C 0.145 3.855 7 H 0.077 0.923 8 C -0.124 4.124 9 C -0.113 4.113 10 C -0.134 4.134 11 C 0.125 3.875 12 N -1.011 6.011 13 S 2.757 3.243 14 O -0.970 6.970 15 O -0.975 6.975 16 N -0.988 5.988 17 C 0.112 3.888 18 C 0.265 3.735 19 H 0.061 0.939 20 C -0.146 4.146 21 C -0.521 4.521 22 H 0.061 0.939 23 C 0.065 3.935 24 N -0.891 5.891 25 Si 0.896 3.104 26 H -0.276 1.276 27 H -0.286 1.286 28 H -0.276 1.276 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.385 0.615 33 H 0.120 0.880 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.049 0.951 44 H 0.070 0.930 45 H 0.046 0.954 46 H 0.014 0.986 47 H 0.036 0.964 48 H 0.084 0.916 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.427 2.819 -14.519 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.314 3.686 3 O -0.438 6.438 4 N -0.355 5.355 5 C -0.027 4.027 6 C 0.037 3.963 7 H 0.095 0.905 8 C -0.163 4.163 9 C -0.151 4.151 10 C -0.173 4.173 11 C 0.000 4.000 12 N -0.851 5.851 13 S 2.769 3.231 14 O -0.953 6.953 15 O -0.958 6.958 16 N -0.830 5.830 17 C -0.035 4.035 18 C 0.163 3.837 19 H 0.079 0.921 20 C -0.205 4.205 21 C -0.561 4.561 22 H 0.079 0.921 23 C -0.137 4.137 24 N -0.529 5.529 25 Si 0.723 3.277 26 H -0.202 1.202 27 H -0.212 1.212 28 H -0.202 1.202 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.218 0.782 33 H 0.137 0.863 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.084 0.916 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.065 0.935 46 H 0.033 0.967 47 H 0.055 0.945 48 H 0.103 0.897 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.988 3.728 -14.507 16.131 hybrid contribution -0.347 -0.568 1.061 1.253 sum 5.640 3.161 -13.446 14.920 Atomic orbital electron populations 1.21854 0.92654 1.04123 1.04702 1.20329 0.90000 0.83253 0.75016 1.90642 1.70794 1.31338 1.50978 1.45985 1.07601 1.08335 1.73620 1.22191 0.80478 0.94689 1.05376 1.21261 0.95783 0.89438 0.89772 0.90534 1.21835 0.93934 0.97705 1.02848 1.21440 1.00412 0.95149 0.98103 1.21894 0.95831 1.00859 0.98674 1.21353 0.93900 0.81787 1.02996 1.58523 1.66874 1.21076 1.38601 1.02986 0.73849 0.74123 0.72183 1.93818 1.85996 1.31305 1.84211 1.93609 1.48252 1.67685 1.86276 1.57677 1.58969 1.31944 1.34408 1.21120 0.92838 0.90556 0.98948 1.18758 0.93584 0.80761 0.90646 0.92116 1.22134 0.97726 1.01972 0.98688 1.21296 1.39221 0.93352 1.02227 0.92094 1.24900 0.95750 0.94869 0.98225 1.69860 1.44368 0.99657 1.39008 0.86596 0.80025 0.77975 0.83077 1.20177 1.21153 1.20173 0.90884 0.88754 0.89298 0.78233 0.86309 0.90995 0.90819 0.90967 0.91753 0.91954 0.91029 0.90943 0.89447 0.91557 0.93244 0.91110 0.93513 0.96687 0.94536 0.89705 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.38 36.00 0.37 -1.74 16 2 C 0.53 8.45 7.22 -10.99 -0.08 8.37 16 3 O -0.56 -10.94 17.04 5.56 0.09 -10.84 16 4 N -0.70 -10.26 3.17 -60.29 -0.19 -10.45 16 5 C 0.10 1.31 4.27 -4.04 -0.02 1.29 16 6 C 0.14 1.62 2.95 -67.60 -0.20 1.42 16 7 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 8 C -0.12 -1.13 5.36 -26.61 -0.14 -1.28 16 9 C -0.11 -0.97 5.88 -26.69 -0.16 -1.13 16 10 C -0.13 -1.38 6.08 -26.61 -0.16 -1.54 16 11 C 0.13 1.60 6.53 -3.72 -0.02 1.58 16 12 N -1.01 -13.90 3.33 -106.48 -0.35 -14.25 16 13 S 2.76 50.35 4.62 -107.50 -0.50 49.86 16 14 O -0.97 -17.84 9.33 -57.17 -0.53 -18.37 16 15 O -0.98 -21.75 16.54 -57.17 -0.95 -22.69 16 16 N -0.99 -19.48 3.12 -115.86 -0.36 -19.84 16 17 C 0.11 1.91 9.68 59.85 0.58 2.49 16 18 C 0.27 6.23 1.87 -69.08 -0.13 6.10 16 19 H 0.06 1.60 6.82 -51.93 -0.35 1.25 16 20 C -0.15 -3.09 8.87 37.16 0.33 -2.76 16 21 C -0.52 -13.84 8.40 -34.44 -0.29 -14.13 16 22 H 0.06 1.63 7.70 -52.48 -0.40 1.22 16 23 C 0.07 1.75 5.33 -17.82 -0.10 1.66 16 24 N -0.89 -24.45 11.72 55.43 0.65 -23.80 16 25 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H 0.07 0.78 7.94 -51.93 -0.41 0.37 16 30 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 32 H 0.38 5.14 7.50 -40.82 -0.31 4.84 16 33 H 0.12 1.87 5.76 -54.28 -0.31 1.55 16 34 H 0.07 0.92 8.02 -51.93 -0.42 0.50 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.09 1.33 6.02 -51.93 -0.31 1.02 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.07 1.16 6.21 -51.93 -0.32 0.84 16 45 H 0.05 0.66 7.93 -51.93 -0.41 0.25 16 46 H 0.01 0.26 6.99 -51.93 -0.36 -0.10 16 47 H 0.04 0.73 6.54 -51.93 -0.34 0.39 16 48 H 0.08 2.02 6.52 -51.93 -0.34 1.68 16 49 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 LS Contribution 384.37 15.07 5.79 5.79 Total: -1.00 -33.23 384.37 -9.46 -42.69 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -8.08 Total: 5.55 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -0.01 Total: 0.34 kcal Atomic # 7 Polarization: -68.09 SS G_CDS: -0.26 Total: -68.35 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -1.38 Total: -51.90 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 50.35 SS G_CDS: -0.50 Total: 49.86 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.23 -9.46 -42.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599522301.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.423 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds