Wall clock time and date at job start Wed Apr 1 2020 05:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21281 * 120.00518 * 2 1 4 4 N 1.34779 * 119.99976 * 180.02562 * 2 1 3 5 5 C 1.46496 * 120.00512 * 185.15679 * 4 2 1 6 6 C 1.53002 * 109.47556 * 187.89320 * 5 4 2 7 7 H 1.09001 * 109.58016 * 51.57579 * 6 5 4 8 8 C 1.53191 * 109.58786 * 171.99693 * 6 5 4 9 9 C 1.53039 * 109.31271 * 174.42292 * 8 6 5 10 10 C 1.53042 * 109.53715 * 298.64016 * 9 8 6 11 11 C 1.53191 * 109.31413 * 61.36231 * 10 9 8 12 12 N 1.46918 * 108.77764 * 305.36422 * 11 10 9 13 13 S 1.65596 * 120.63422 * 233.63082 * 12 11 10 14 14 O 1.42102 * 106.40533 * 169.43763 * 13 12 11 15 15 O 1.42098 * 106.40326 * 302.36308 * 13 12 11 16 16 N 1.65602 * 107.21908 * 55.90145 * 13 12 11 17 17 C 1.46501 * 120.00159 * 84.38910 * 16 13 12 18 18 C 1.46499 * 119.99855 * 264.39178 * 16 13 12 19 19 H 1.09002 * 109.47516 * 4.32789 * 18 16 13 20 20 C 1.53001 * 109.46994 * 124.32480 * 18 16 13 21 21 C 1.50697 * 109.47346 * 244.32129 * 18 16 13 22 22 H 1.08006 * 119.99780 * 354.11189 * 21 18 16 23 23 C 1.37879 * 120.00344 * 174.10027 * 21 18 16 24 24 N 1.31513 * 119.99771 * 0.91941 * 23 21 18 25 25 Si 1.86790 * 120.00124 * 180.91576 * 23 21 18 26 26 H 1.48498 * 109.47347 * 60.00345 * 25 23 21 27 27 H 1.48502 * 109.47583 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47493 * 300.00218 * 25 23 21 29 29 H 1.08997 * 109.47403 * 185.00481 * 1 2 3 30 30 H 1.08995 * 109.47355 * 305.01098 * 1 2 3 31 31 H 1.09008 * 109.46889 * 65.00603 * 1 2 3 32 32 H 0.97004 * 119.99626 * 5.14940 * 4 2 1 33 33 H 1.09004 * 109.47393 * 67.89055 * 5 4 2 34 34 H 1.09005 * 109.46614 * 307.89110 * 5 4 2 35 35 H 1.09002 * 109.50074 * 294.37735 * 8 6 5 36 36 H 1.09002 * 109.49545 * 54.47481 * 8 6 5 37 37 H 1.08998 * 109.46349 * 178.61922 * 9 8 6 38 38 H 1.09002 * 109.45063 * 58.65059 * 9 8 6 39 39 H 1.08996 * 109.49584 * 301.41067 * 10 9 8 40 40 H 1.09000 * 109.49567 * 181.31472 * 10 9 8 41 41 H 1.09003 * 109.58684 * 185.57470 * 11 10 9 42 42 H 1.09001 * 109.70291 * 65.22553 * 11 10 9 43 43 H 1.08996 * 109.46988 * 90.00386 * 17 16 13 44 44 H 1.08999 * 109.47203 * 210.00491 * 17 16 13 45 45 H 1.09000 * 109.47251 * 330.00295 * 17 16 13 46 46 H 1.08998 * 109.47262 * 299.99550 * 20 18 16 47 47 H 1.09004 * 109.47558 * 60.00236 * 20 18 16 48 48 H 1.09004 * 109.47135 * 180.02562 * 20 18 16 49 49 H 0.97002 * 120.00118 * 185.00124 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6413 -1.1700 0.1135 6 6 4.1677 -2.5893 -0.1089 7 1 3.7579 -2.9897 -1.0362 8 6 5.6973 -2.5631 -0.1891 9 6 6.2244 -3.9975 -0.2718 10 6 5.8197 -4.7649 0.9890 11 6 4.2915 -4.8160 1.0824 12 7 3.7676 -3.4450 1.0164 13 16 2.7461 -2.8747 2.1883 14 8 2.6289 -1.4751 1.9723 15 8 1.6299 -3.7539 2.2102 16 7 3.5161 -3.0604 3.6426 17 6 4.4594 -2.0405 4.1076 18 6 3.2541 -4.2447 4.4642 19 1 2.5910 -4.9215 3.9253 20 6 4.5736 -4.9574 4.7670 21 6 2.6017 -3.8254 5.7563 22 1 2.4885 -2.7767 5.9887 23 6 2.1492 -4.7804 6.6419 24 7 2.3031 -6.0573 6.3672 25 14 1.3176 -4.2607 8.2317 26 1 0.1069 -3.4599 7.9182 27 1 0.9270 -5.4677 9.0037 28 1 2.2581 -3.4413 9.0375 29 1 -0.3634 -1.0237 0.0896 30 1 -0.3634 0.5896 0.8416 31 1 -0.3633 0.4342 -0.9315 32 1 1.6987 -2.0055 -0.0763 33 1 3.9289 -0.8275 1.1076 34 1 4.0656 -0.5033 -0.6373 35 1 6.0057 -2.0104 -1.0765 36 1 6.0999 -2.0783 0.7003 37 1 7.3112 -3.9809 -0.3536 38 1 5.8018 -4.4896 -1.1477 39 1 6.2212 -4.2593 1.8672 40 1 6.2154 -5.7794 0.9400 41 1 3.9983 -5.2742 2.0270 42 1 3.8920 -5.4002 0.2535 43 1 3.9256 -1.2917 4.6927 44 1 5.2242 -2.5084 4.7273 45 1 4.9302 -1.5624 3.2485 46 1 5.0455 -5.2608 3.8325 47 1 5.2368 -4.2808 5.3061 48 1 4.3786 -5.8389 5.3780 49 1 1.9213 -6.7291 6.9536 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599522301.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:25 Heat of formation + Delta-G solvation = -88.923868 kcal Electronic energy + Delta-G solvation = -32304.234774 eV Core-core repulsion = 28201.142823 eV Total energy + Delta-G solvation = -4103.091951 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.94035 -39.51782 -38.48267 -37.87492 -37.03436 -35.38715 -34.49988 -33.28445 -32.75435 -30.98291 -30.52956 -27.39255 -27.05228 -26.96891 -24.94379 -23.32348 -22.57966 -21.73900 -21.16981 -19.90166 -18.77979 -18.55406 -17.98214 -17.46334 -17.27222 -16.95342 -16.93079 -16.55171 -15.75665 -15.63629 -15.36358 -15.12374 -14.85772 -14.70374 -14.59055 -14.47719 -14.28685 -13.84402 -13.73757 -13.52152 -13.33931 -13.17678 -13.02044 -13.00156 -12.95252 -12.90390 -12.83803 -12.59156 -12.28765 -12.22643 -12.17953 -11.92062 -11.88363 -11.56541 -11.46359 -11.22914 -11.10480 -10.80914 -10.53489 -9.96884 -9.66860 -9.61742 -8.14726 -6.27634 -0.31967 1.40040 1.41358 1.48635 1.77398 1.98705 2.39070 2.41201 2.55785 3.13919 3.37406 3.50113 3.83520 3.94493 4.00893 4.09838 4.19793 4.23324 4.32131 4.38472 4.45539 4.60984 4.62362 4.67002 4.72221 4.74513 4.82618 4.92934 4.96641 4.98775 5.01011 5.03668 5.11043 5.13338 5.23455 5.28591 5.29875 5.35995 5.52291 5.55951 5.57337 5.62285 5.78286 5.87847 6.11965 6.27496 6.51941 6.80126 7.32893 7.41339 8.89942 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011889 B = 0.004920 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.609970 B = 5689.924588 C = 7247.278659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.514 3.486 3 O -0.601 6.601 4 N -0.702 5.702 5 C 0.093 3.907 6 C 0.147 3.853 7 H 0.101 0.899 8 C -0.122 4.122 9 C -0.108 4.108 10 C -0.130 4.130 11 C 0.119 3.881 12 N -1.001 6.001 13 S 2.769 3.231 14 O -0.976 6.976 15 O -1.021 7.021 16 N -0.996 5.996 17 C 0.109 3.891 18 C 0.273 3.727 19 H 0.026 0.974 20 C -0.132 4.132 21 C -0.541 4.541 22 H 0.051 0.949 23 C 0.020 3.980 24 N -0.912 5.912 25 Si 0.948 3.052 26 H -0.280 1.280 27 H -0.279 1.279 28 H -0.267 1.267 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.115 0.885 32 H 0.390 0.610 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.057 0.943 42 H 0.084 0.916 43 H 0.035 0.965 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.044 0.956 47 H 0.044 0.956 48 H 0.056 0.944 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.854 2.865 -16.198 18.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.303 3.697 3 O -0.483 6.483 4 N -0.353 5.353 5 C -0.031 4.031 6 C 0.041 3.959 7 H 0.119 0.881 8 C -0.161 4.161 9 C -0.145 4.145 10 C -0.169 4.169 11 C -0.006 4.006 12 N -0.843 5.843 13 S 2.781 3.219 14 O -0.959 6.959 15 O -1.004 7.004 16 N -0.837 5.837 17 C -0.036 4.036 18 C 0.169 3.831 19 H 0.043 0.957 20 C -0.191 4.191 21 C -0.581 4.581 22 H 0.069 0.931 23 C -0.180 4.180 24 N -0.551 5.551 25 Si 0.774 3.226 26 H -0.206 1.206 27 H -0.204 1.204 28 H -0.192 1.192 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.134 0.866 32 H 0.224 0.776 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.117 0.883 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.076 0.924 42 H 0.103 0.897 43 H 0.054 0.946 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.075 0.925 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.422 3.764 -16.175 18.190 hybrid contribution -0.776 -0.555 1.484 1.764 sum 6.646 3.209 -14.690 16.440 Atomic orbital electron populations 1.21917 0.89985 1.05239 1.06055 1.21025 0.91549 0.82917 0.74194 1.90612 1.71927 1.32687 1.53101 1.46081 1.08298 1.08318 1.72567 1.22226 0.80042 0.96455 1.04418 1.21509 0.97619 0.87540 0.89220 0.88079 1.21881 0.91699 0.98700 1.03838 1.21431 1.01574 0.94151 0.97345 1.21893 0.93435 1.02125 0.99477 1.21523 0.95989 0.80868 1.02227 1.58121 1.66282 1.21902 1.38015 1.02475 0.73566 0.73540 0.72299 1.93849 1.86305 1.31537 1.84166 1.93550 1.51024 1.68900 1.86963 1.57574 1.59662 1.31419 1.35081 1.21246 0.92381 0.89793 1.00223 1.18376 0.93782 0.81579 0.89362 0.95655 1.21907 0.96855 1.00598 0.99740 1.21641 1.39703 0.92939 1.03775 0.93074 1.25591 0.96460 0.95005 1.00936 1.69964 1.44967 1.00277 1.39912 0.85769 0.78993 0.77827 0.80034 1.20615 1.20400 1.19229 0.89590 0.88983 0.86624 0.77607 0.88592 0.89863 0.88336 0.91531 0.89952 0.90615 0.92071 0.89419 0.92414 0.89729 0.94625 0.90452 0.90541 0.93671 0.93740 0.92494 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.02 10.38 71.23 0.74 -3.28 16 2 C 0.51 16.26 7.22 87.65 0.63 16.89 16 3 O -0.60 -23.53 17.04 -3.03 -0.05 -23.59 16 4 N -0.70 -19.83 3.17 -463.06 -1.47 -21.29 16 5 C 0.09 2.37 4.27 86.38 0.37 2.74 16 6 C 0.15 2.91 2.95 44.97 0.13 3.04 16 7 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 8 C -0.12 -1.78 5.36 30.67 0.16 -1.61 16 9 C -0.11 -1.38 5.88 30.62 0.18 -1.20 16 10 C -0.13 -2.31 6.08 30.67 0.19 -2.13 16 11 C 0.12 2.85 6.53 86.36 0.56 3.41 16 12 N -1.00 -26.11 3.33 -490.79 -1.63 -27.74 16 13 S 2.77 101.78 4.62 -56.49 -0.26 101.52 16 14 O -0.98 -35.97 9.33 -128.00 -1.19 -37.16 16 15 O -1.02 -46.90 16.54 -128.00 -2.12 -49.02 16 16 N -1.00 -39.77 3.12 -520.45 -1.62 -41.40 16 17 C 0.11 3.70 9.68 127.77 1.24 4.94 16 18 C 0.27 13.16 1.87 44.24 0.08 13.25 16 19 H 0.03 1.41 6.82 -2.39 -0.02 1.40 16 20 C -0.13 -5.61 8.87 71.98 0.64 -4.97 16 21 C -0.54 -29.45 8.40 25.60 0.21 -29.23 16 22 H 0.05 2.80 7.70 -2.91 -0.02 2.78 16 23 C 0.02 1.11 5.33 84.66 0.45 1.56 16 24 N -0.91 -51.19 11.72 21.45 0.25 -50.94 16 25 Si 0.95 43.59 29.54 68.60 2.03 45.62 16 26 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 27 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 28 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 29 H 0.09 1.75 7.94 -2.39 -0.02 1.73 16 30 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.12 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.39 10.07 7.50 -92.71 -0.70 9.38 16 33 H 0.10 2.94 5.76 -39.64 -0.23 2.72 16 34 H 0.08 1.97 8.02 -2.38 -0.02 1.95 16 35 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 0.82 8.14 -2.39 -0.02 0.81 16 39 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.06 1.75 6.02 -2.39 -0.01 1.74 16 42 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.08 2.49 6.21 -2.39 -0.01 2.47 16 45 H 0.08 2.10 7.93 -2.39 -0.02 2.08 16 46 H 0.04 1.60 6.99 -2.39 -0.02 1.58 16 47 H 0.04 1.78 6.54 -2.39 -0.02 1.76 16 48 H 0.06 2.76 6.52 -2.39 -0.02 2.74 16 49 H 0.27 14.19 8.32 -92.71 -0.77 13.42 16 Total: -1.00 -74.57 384.37 -0.44 -75.01 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.04 Total: 25.60 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 5.59 Total: 3.40 kcal Atomic # 7 Polarization: -136.90 SS G_CDS: -4.47 Total: -141.37 kcal Atomic # 8 Polarization: -106.40 SS G_CDS: -3.36 Total: -109.77 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 101.78 SS G_CDS: -0.26 Total: 101.52 kcal Total: -74.57 -0.44 -75.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599522301.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.917 kcal (2) G-P(sol) polarization free energy of solvation -74.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds