Wall clock time and date at job start Wed Apr 1 2020 05:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47127 * 2 1 4 4 C 1.53000 * 109.47355 * 240.00001 * 2 1 3 5 5 C 1.52995 * 109.47054 * 174.99802 * 4 2 1 6 6 S 1.81409 * 109.47125 * 180.02562 * 5 4 2 7 7 C 1.81393 * 101.92171 * 179.97438 * 6 5 4 8 8 O 1.42099 * 108.57826 * 294.48790 * 6 5 4 9 9 O 1.42102 * 108.57664 * 65.51157 * 6 5 4 10 10 N 1.46504 * 109.47383 * 119.99719 * 2 1 3 11 11 C 1.34776 * 120.00057 * 275.00462 * 10 2 1 12 12 O 1.21582 * 119.99827 * 4.96546 * 11 10 2 13 13 N 1.34775 * 119.99758 * 184.96949 * 11 10 2 14 14 C 1.47085 * 120.88220 * 354.79912 * 13 11 10 15 15 C 1.53240 * 108.51807 * 231.16207 * 14 13 11 16 16 N 1.46893 * 109.34110 * 306.17179 * 15 14 13 17 17 C 1.46904 * 111.00050 * 187.25679 * 16 15 14 18 18 C 1.50700 * 109.47522 * 170.00099 * 17 16 15 19 19 H 1.07997 * 119.99797 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00016 * 179.97438 * 18 17 16 21 21 N 1.31519 * 120.00009 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00187 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47205 * 90.00057 * 22 20 18 24 24 H 1.48504 * 109.46990 * 209.99806 * 22 20 18 25 25 H 1.48500 * 109.46884 * 329.99981 * 22 20 18 26 26 C 1.46897 * 111.27283 * 63.10860 * 16 15 14 27 27 C 1.47084 * 120.87908 * 174.77500 * 13 11 10 28 28 H 1.08992 * 109.47352 * 60.00485 * 1 2 3 29 29 H 1.09001 * 109.46624 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47147 * 299.99497 * 1 2 3 31 31 H 1.08999 * 109.47403 * 294.99998 * 4 2 1 32 32 H 1.09002 * 109.46990 * 54.99883 * 4 2 1 33 33 H 1.09002 * 109.47302 * 299.99577 * 5 4 2 34 34 H 1.08997 * 109.47579 * 60.00014 * 5 4 2 35 35 H 1.08996 * 109.47281 * 60.00130 * 7 6 5 36 36 H 1.09002 * 109.47075 * 180.02562 * 7 6 5 37 37 H 1.08994 * 109.47660 * 299.99554 * 7 6 5 38 38 H 0.96994 * 119.99690 * 95.00210 * 10 2 1 39 39 H 1.08996 * 109.62434 * 111.45401 * 14 13 11 40 40 H 1.08997 * 109.62703 * 350.86852 * 14 13 11 41 41 H 1.08999 * 109.49450 * 186.20765 * 15 14 13 42 42 H 1.09004 * 109.49371 * 66.13471 * 15 14 13 43 43 H 1.09000 * 109.46811 * 289.99908 * 17 16 15 44 44 H 1.09001 * 109.47246 * 49.99120 * 17 16 15 45 45 H 0.96995 * 120.00570 * 180.02562 * 21 20 18 46 46 H 1.08997 * 109.49471 * 56.85177 * 26 16 15 47 47 H 1.08997 * 109.49632 * 176.93996 * 26 16 15 48 48 H 1.08998 * 109.62553 * 9.13120 * 27 13 11 49 49 H 1.08998 * 109.62754 * 248.54628 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3136 6 16 4.1695 -1.4677 -2.7952 7 6 5.9613 -1.2150 -2.6684 8 8 3.8968 -2.8557 -2.6603 9 8 3.6953 -0.7757 -3.9422 10 7 2.0184 -0.6906 1.1962 11 6 2.1470 -0.0182 2.3572 12 8 1.7735 1.1362 2.4357 13 7 2.6899 -0.6254 3.4310 14 6 3.0439 -2.0525 3.3925 15 6 2.4225 -2.7411 4.6123 16 7 2.8317 -2.0323 5.8321 17 6 2.3997 -2.7591 7.0334 18 6 3.0402 -2.1434 8.2507 19 1 3.7024 -1.2971 8.1426 20 6 2.7809 -2.6606 9.5021 21 7 3.3404 -2.1236 10.5644 22 14 1.6351 -4.1240 9.6890 23 1 2.4204 -5.3815 9.6048 24 1 0.9532 -4.0536 11.0064 25 1 0.6209 -4.1001 8.6046 26 6 2.3269 -0.6528 5.8416 27 6 2.9445 0.1215 4.6722 28 1 -0.3633 0.5137 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7517 -1.7715 -1.2056 32 1 1.6054 -0.2617 -2.1370 33 1 3.8531 0.4371 -1.3574 34 1 3.9995 -1.0726 -0.4259 35 1 6.3258 -1.6569 -1.7411 36 1 6.4559 -1.6890 -3.5162 37 1 6.1788 -0.1470 -2.6721 38 1 2.2491 -1.6316 1.1526 39 1 4.1279 -2.1617 3.4230 40 1 2.6532 -2.5022 2.4797 41 1 2.7649 -3.7749 4.6601 42 1 1.3360 -2.7211 4.5271 43 1 1.3151 -2.6991 7.1240 44 1 2.7003 -3.8038 6.9537 45 1 3.1583 -2.4875 11.4448 46 1 1.2418 -0.6618 5.7392 47 1 2.6002 -0.1719 6.7808 48 1 2.4881 1.1091 4.6053 49 1 4.0190 0.2212 4.8257 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601596993.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:22 Heat of formation + Delta-G solvation = -81.747581 kcal Electronic energy + Delta-G solvation = -29224.634174 eV Core-core repulsion = 25121.853410 eV Total energy + Delta-G solvation = -4102.780764 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.46360 -38.15123 -37.44143 -36.73657 -36.44234 -34.55356 -32.89484 -32.33679 -30.96111 -30.33066 -29.93965 -28.53748 -25.74579 -24.79445 -23.44619 -22.21362 -21.43363 -20.59879 -19.51503 -19.33363 -18.08293 -17.17801 -16.86194 -16.79105 -16.50717 -16.35954 -15.46126 -15.23271 -14.80452 -14.64549 -14.48976 -14.25990 -14.03856 -13.82393 -13.80714 -13.71361 -13.55139 -13.37506 -13.00355 -12.62061 -12.54955 -12.45290 -12.43976 -12.25489 -12.14594 -11.99358 -11.67041 -11.56785 -11.37230 -11.29936 -10.97745 -10.84536 -10.78032 -10.58185 -10.41010 -10.04742 -9.93012 -9.37524 -9.29878 -8.63161 -8.46029 -7.50800 -6.11311 -4.09472 -0.53090 2.22342 2.59562 3.10125 3.19382 3.23554 3.31702 3.32735 3.50140 3.77925 3.99799 4.14223 4.26777 4.34361 4.36174 4.47450 4.55414 4.89162 4.95618 5.03763 5.07570 5.14151 5.17255 5.19084 5.24820 5.29852 5.35256 5.45183 5.53871 5.68728 5.71464 5.84423 5.92273 6.00527 6.03351 6.30427 6.37930 6.45314 6.55551 6.76940 6.89228 6.96049 7.49210 7.75132 7.90822 7.92466 8.56858 8.58246 8.96138 9.49887 11.01536 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018294 B = 0.002142 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.223150 B =13068.404777 C =13606.537669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.170 3.830 3 H 0.092 0.908 4 C -0.120 4.120 5 C -0.611 4.611 6 S 2.420 3.580 7 C -0.657 4.657 8 O -0.939 6.939 9 O -0.940 6.940 10 N -0.748 5.748 11 C 0.708 3.292 12 O -0.593 6.593 13 N -0.626 5.626 14 C 0.118 3.882 15 C 0.037 3.963 16 N -0.526 5.526 17 C 0.163 3.837 18 C -0.512 4.512 19 H 0.082 0.918 20 C 0.069 3.931 21 N -0.898 5.898 22 Si 0.875 3.125 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.269 1.269 26 C 0.050 3.950 27 C 0.133 3.867 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.394 0.606 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.027 0.973 43 H -0.011 1.011 44 H 0.025 0.975 45 H 0.264 0.736 46 H 0.025 0.975 47 H 0.103 0.897 48 H 0.090 0.910 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.525 1.786 -27.619 27.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.063 3.937 3 H 0.110 0.890 4 C -0.158 4.158 5 C -0.740 4.740 6 S 2.602 3.398 7 C -0.806 4.806 8 O -0.936 6.936 9 O -0.938 6.938 10 N -0.406 5.406 11 C 0.409 3.591 12 O -0.471 6.471 13 N -0.363 5.363 14 C -0.006 4.006 15 C -0.092 4.092 16 N -0.250 5.250 17 C 0.037 3.963 18 C -0.550 4.550 19 H 0.100 0.900 20 C -0.133 4.133 21 N -0.537 5.537 22 Si 0.702 3.298 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.194 1.194 26 C -0.079 4.079 27 C 0.010 3.990 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.231 0.769 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.046 0.954 43 H 0.006 0.994 44 H 0.043 0.957 45 H 0.074 0.926 46 H 0.043 0.957 47 H 0.121 0.879 48 H 0.109 0.891 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.333 2.200 -28.015 28.133 hybrid contribution -0.762 -1.053 0.978 1.627 sum 0.571 1.147 -27.037 27.067 Atomic orbital electron populations 1.22232 0.94954 1.02408 1.03035 1.20679 0.94050 0.97023 0.81922 0.88967 1.21686 0.90609 1.03341 1.00210 1.30361 1.06872 1.15392 1.21372 1.07865 0.78439 0.76112 0.77386 1.30269 1.26285 1.12055 1.12030 1.93615 1.83325 1.29963 1.86670 1.93607 1.78637 1.75654 1.45857 1.45421 1.72511 1.13676 1.09041 1.15826 0.78446 0.84589 0.80213 1.90894 1.55876 1.16744 1.83629 1.47441 1.65171 1.10592 1.13094 1.21755 1.00761 0.80317 0.97779 1.22429 0.97304 0.98319 0.91181 1.61902 1.59666 1.01804 1.01655 1.20175 0.93778 0.94104 0.88247 1.20997 1.28389 1.17003 0.88621 0.90030 1.24898 0.95725 0.96812 0.95842 1.69885 1.43877 1.41461 0.98465 0.86866 0.81636 0.83578 0.77675 1.20122 1.21167 1.19362 1.22407 0.96248 0.90379 0.98905 1.21744 1.00859 0.95359 0.80994 0.91528 0.92366 0.91323 0.89493 0.88380 0.84538 0.84798 0.85166 0.85223 0.85273 0.76931 0.90491 0.91141 0.90048 0.95446 0.99375 0.95676 0.92585 0.95669 0.87904 0.89134 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 9.48 37.16 0.35 -1.05 16 2 C 0.17 1.39 2.54 -67.93 -0.17 1.21 16 3 H 0.09 0.86 7.65 -51.93 -0.40 0.46 16 4 C -0.12 -0.67 4.76 -26.73 -0.13 -0.79 16 5 C -0.61 -2.40 5.69 37.15 0.21 -2.19 16 6 S 2.42 12.15 5.36 -107.50 -0.58 11.57 16 7 C -0.66 -1.57 10.62 101.05 1.07 -0.50 16 8 O -0.94 -8.35 18.10 -57.83 -1.05 -9.40 16 9 O -0.94 -8.25 18.10 -57.83 -1.05 -9.29 16 10 N -0.75 -7.16 4.44 -58.68 -0.26 -7.42 16 11 C 0.71 9.75 8.27 -86.92 -0.72 9.03 16 12 O -0.59 -10.26 15.47 5.29 0.08 -10.18 16 13 N -0.63 -8.65 3.01 -178.19 -0.54 -9.19 16 14 C 0.12 1.38 6.54 -3.60 -0.02 1.36 16 15 C 0.04 0.56 5.62 -3.70 -0.02 0.54 16 16 N -0.53 -10.19 4.62 -235.76 -1.09 -11.28 16 17 C 0.16 3.77 3.79 -4.97 -0.02 3.75 16 18 C -0.51 -13.97 8.96 -34.44 -0.31 -14.28 16 19 H 0.08 2.41 7.37 -52.49 -0.39 2.03 16 20 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 21 N -0.90 -26.87 13.96 55.43 0.77 -26.09 16 22 Si 0.88 20.96 27.47 -169.99 -4.67 16.29 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 26 C 0.05 0.91 5.46 -3.70 -0.02 0.89 16 27 C 0.13 2.08 6.61 -3.60 -0.02 2.06 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.14 0.32 8.14 -51.92 -0.42 -0.10 16 34 H 0.13 0.40 7.75 -51.93 -0.40 0.00 16 35 H 0.13 0.15 8.14 -51.93 -0.42 -0.27 16 36 H 0.13 0.28 8.14 -51.92 -0.42 -0.15 16 37 H 0.13 0.11 8.14 -51.93 -0.42 -0.31 16 38 H 0.39 2.94 6.14 -40.82 -0.25 2.69 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.59 5.74 -51.93 -0.30 0.29 16 41 H 0.08 1.14 7.99 -51.93 -0.41 0.72 16 42 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 43 H -0.01 -0.27 7.18 -51.93 -0.37 -0.65 16 44 H 0.03 0.58 7.40 -51.93 -0.38 0.19 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.10 2.10 6.67 -51.93 -0.35 1.76 16 48 H 0.09 1.45 7.04 -51.93 -0.37 1.08 16 49 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 400.13 15.07 6.03 6.03 Total: -1.00 -38.50 400.13 -10.51 -49.02 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -8.28 Total: -1.93 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 0.11 Total: 1.88 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -1.11 Total: -53.98 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -2.01 Total: -28.87 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Atomic # 16 Polarization: 12.15 SS G_CDS: -0.58 Total: 11.57 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -38.50 -10.51 -49.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601596993.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.731 kcal (2) G-P(sol) polarization free energy of solvation -38.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds